PDB Chemical Component N4B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for N4B
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.412 |
1.382 |
C1 |
C6 |
1.364 |
1.382 |
C1 |
C1' |
1.504 |
1.506 |
C2 |
C3 |
1.373 |
1.382 |
C2 |
H2 |
1.102 |
1.080 |
C3 |
C4 |
1.387 |
1.382 |
C3 |
H3 |
1.103 |
1.081 |
C4 |
C5 |
1.365 |
1.382 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
C6 |
1.380 |
1.382 |
C5 |
H5 |
1.104 |
1.080 |
C6 |
H6 |
1.103 |
1.080 |
C1' |
C2' |
1.526 |
1.529 |
C1' |
H1'1 |
1.114 |
1.090 |
C1' |
H1'2 |
1.116 |
1.090 |
C2' |
C3' |
1.519 |
1.530 |
C2' |
H2'1 |
1.115 |
1.089 |
C2' |
H2'2 |
1.114 |
1.090 |
C3' |
C4' |
1.500 |
1.529 |
C3' |
H3'1 |
1.116 |
1.089 |
C3' |
H3'2 |
1.115 |
1.091 |
C4' |
H4'1 |
1.115 |
1.091 |
C4' |
H4'2 |
1.114 |
1.090 |
C4' |
H4'3 |
1.115 |
1.089 |
Bond Angles for N4B
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
119.4 |
120.0 |
C2 |
C1 |
C1' |
121.8 |
120.0 |
C1 |
C2 |
C3 |
120.0 |
120.0 |
C1 |
C2 |
H2 |
121.4 |
120.0 |
C6 |
C1 |
C1' |
118.7 |
120.0 |
C1 |
C6 |
C5 |
120.1 |
120.0 |
C1 |
C6 |
H6 |
119.4 |
120.0 |
C1 |
C1' |
C2' |
109.2 |
109.5 |
C1 |
C1' |
H1'1 |
112.3 |
109.5 |
C1 |
C1' |
H1'2 |
112.3 |
109.5 |
C3 |
C2 |
H2 |
118.6 |
120.0 |
C2 |
C3 |
C4 |
119.6 |
120.0 |
C2 |
C3 |
H3 |
119.7 |
120.0 |
C4 |
C3 |
H3 |
120.6 |
119.9 |
C3 |
C4 |
C5 |
120.0 |
120.0 |
C3 |
C4 |
H4 |
120.8 |
120.0 |
C5 |
C4 |
H4 |
119.2 |
120.0 |
C4 |
C5 |
C6 |
120.9 |
120.0 |
C4 |
C5 |
H5 |
119.0 |
120.0 |
C6 |
C5 |
H5 |
120.1 |
120.0 |
C5 |
C6 |
H6 |
120.5 |
120.0 |
C2' |
C1' |
H1'1 |
112.4 |
109.5 |
C2' |
C1' |
H1'2 |
112.3 |
109.4 |
C1' |
C2' |
C3' |
112.0 |
109.5 |
C1' |
C2' |
H2'1 |
111.3 |
109.5 |
C1' |
C2' |
H2'2 |
111.3 |
109.5 |
H1'1 |
C1' |
H1'2 |
98.1 |
109.4 |
C3' |
C2' |
H2'1 |
111.3 |
109.5 |
C3' |
C2' |
H2'2 |
111.3 |
109.4 |
C2' |
C3' |
C4' |
112.8 |
109.6 |
C2' |
C3' |
H3'1 |
111.1 |
109.6 |
C2' |
C3' |
H3'2 |
111.1 |
109.4 |
H2'1 |
C2' |
H2'2 |
99.1 |
109.5 |
C4' |
C3' |
H3'1 |
111.0 |
109.5 |
C4' |
C3' |
H3'2 |
111.0 |
109.4 |
C3' |
C4' |
H4'1 |
112.7 |
109.5 |
C3' |
C4' |
H4'2 |
111.0 |
109.4 |
C3' |
C4' |
H4'3 |
111.0 |
109.5 |
H3'1 |
C3' |
H3'2 |
99.3 |
109.4 |
H4'1 |
C4' |
H4'2 |
111.1 |
109.4 |
H4'1 |
C4' |
H4'3 |
110.9 |
109.5 |
H4'2 |
C4' |
H4'3 |
99.3 |
109.5 |
Torsion Angles for N4B
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C1' |
183.4 |
180.2 |
C2 |
C1 |
C6 |
C5 |
0.7 |
359.6 |
C2 |
C1 |
C6 |
H6 |
180.7 |
180.0 |
C2 |
C1 |
C1' |
C2' |
285.3 |
90.0 |
C2 |
C1 |
C1' |
H1'1 |
50.7 |
330.0 |
C2 |
C1 |
C1' |
H1'2 |
160.1 |
210.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
C1 |
C2 |
C3 |
C4 |
359.1 |
0.0 |
C1 |
C2 |
C3 |
H3 |
179.1 |
180.0 |
C2 |
C1 |
C6 |
C1' |
176.7 |
179.8 |
C6 |
C1 |
C2 |
C3 |
359.5 |
0.2 |
C6 |
C1 |
C2 |
H2 |
179.5 |
180.3 |
C6 |
C1 |
C1' |
C2' |
102.0 |
269.8 |
C6 |
C1 |
C1' |
H1'1 |
227.3 |
149.8 |
C6 |
C1 |
C1' |
H1'2 |
336.7 |
29.7 |
C4 |
C5 |
C6 |
C1 |
0.5 |
0.4 |
C1 |
C6 |
C5 |
H5 |
180.5 |
180.3 |
C5 |
C6 |
C1 |
H6 |
180.0 |
179.6 |
C2 |
C1 |
C1' |
C6 |
183.4 |
180.2 |
C1' |
C1 |
C2 |
C3 |
176.1 |
180.0 |
C1' |
C1 |
C2 |
H2 |
356.1 |
0.1 |
C1' |
C1 |
C6 |
C5 |
184.0 |
179.9 |
C1' |
C1 |
C6 |
H6 |
4.0 |
0.2 |
C2' |
C1' |
C1 |
H1'1 |
234.7 |
120.0 |
C2' |
C1' |
C1 |
H1'2 |
125.2 |
240.0 |
C1 |
C1' |
C2' |
C3' |
284.4 |
180.0 |
C1 |
C1' |
C2' |
H2'1 |
49.6 |
60.0 |
C1 |
C1' |
C2' |
H2'2 |
159.1 |
300.0 |
H1'1 |
C1' |
C1 |
H1'2 |
250.6 |
120.0 |
C3 |
C2 |
C1 |
C6 |
359.5 |
0.2 |
C3 |
C2 |
C1 |
C1' |
176.1 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
2.1 |
360.0 |
C2 |
C3 |
C4 |
H4 |
182.1 |
179.9 |
H2 |
C2 |
C1 |
C6 |
179.5 |
180.3 |
H2 |
C2 |
C1 |
C1' |
356.1 |
0.1 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.9 |
H2 |
C2 |
C3 |
C4 |
179.1 |
179.9 |
H2 |
C2 |
C3 |
H3 |
359.1 |
359.9 |
C4 |
C3 |
C2 |
H2 |
179.1 |
179.9 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
C3 |
C4 |
C5 |
C6 |
358.1 |
359.8 |
C3 |
C4 |
C5 |
H5 |
178.1 |
179.9 |
H3 |
C3 |
C2 |
H2 |
359.1 |
359.9 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
C5 |
182.1 |
180.0 |
H3 |
C3 |
C4 |
H4 |
2.1 |
359.9 |
C1 |
C6 |
C5 |
C4 |
0.5 |
0.4 |
C5 |
C4 |
C3 |
H3 |
182.1 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
H6 |
180.5 |
180.0 |
H4 |
C4 |
C3 |
H3 |
2.1 |
359.9 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.1 |
H4 |
C4 |
C5 |
C6 |
178.0 |
179.9 |
H4 |
C4 |
C5 |
H5 |
358.1 |
0.0 |
C5 |
C6 |
C1 |
C1' |
184.0 |
179.9 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.4 |
C6 |
C5 |
C4 |
H4 |
178.0 |
179.9 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
H5 |
C5 |
C4 |
H4 |
358.1 |
0.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
H5 |
C5 |
C6 |
H6 |
0.5 |
359.9 |
H6 |
C6 |
C1 |
C1' |
4.0 |
0.2 |
C1 |
C6 |
H6 |
C5 |
180.0 |
179.6 |
H6 |
C6 |
C5 |
H5 |
0.5 |
359.9 |
C1 |
C1' |
C2' |
H1'1 |
125.3 |
239.9 |
C1 |
C1' |
C2' |
H1'2 |
234.8 |
120.0 |
H1'1 |
C1' |
C2' |
H1'2 |
109.5 |
240.1 |
C3' |
C2' |
C1' |
H2'1 |
234.8 |
120.1 |
C3' |
C2' |
C1' |
H2'2 |
125.3 |
240.1 |
C1' |
C2' |
C3' |
C4' |
295.1 |
180.0 |
C1' |
C2' |
C3' |
H3'1 |
60.3 |
59.9 |
C1' |
C2' |
C3' |
H3'2 |
169.8 |
299.9 |
H2'1 |
C2' |
C1' |
H2'2 |
250.5 |
120.0 |
C1 |
C1' |
H1'1 |
C2' |
236.4 |
120.0 |
C1 |
C1' |
H1'1 |
H1'2 |
118.2 |
239.9 |
C2' |
C1' |
H1'1 |
H1'2 |
241.8 |
119.9 |
H1'1 |
C1' |
C2' |
C3' |
159.1 |
300.1 |
H1'1 |
C1' |
C2' |
H2'1 |
284.3 |
180.0 |
H1'1 |
C1' |
C2' |
H2'2 |
33.8 |
60.0 |
C1 |
C1' |
H1'2 |
C2' |
123.5 |
240.0 |
C1 |
C1' |
H1'2 |
H1'1 |
241.8 |
120.1 |
C2' |
C1' |
H1'2 |
H1'1 |
118.3 |
240.1 |
H1'2 |
C1' |
C2' |
C3' |
49.6 |
60.0 |
H1'2 |
C1' |
C2' |
H2'1 |
174.8 |
300.0 |
H1'2 |
C1' |
C2' |
H2'2 |
284.3 |
180.0 |
C3' |
C2' |
C1' |
H1'1 |
159.1 |
300.1 |
C3' |
C2' |
C1' |
H1'2 |
49.6 |
60.0 |
C1' |
C2' |
C3' |
H2'1 |
125.2 |
239.9 |
C1' |
C2' |
C3' |
H2'2 |
234.7 |
120.0 |
H2'1 |
C2' |
C3' |
H2'2 |
109.5 |
240.1 |
C4' |
C3' |
C2' |
H3'1 |
234.7 |
120.2 |
C4' |
C3' |
C2' |
H3'2 |
125.3 |
240.1 |
C2' |
C3' |
C4' |
H4'1 |
179.9 |
179.9 |
C2' |
C3' |
C4' |
H4'2 |
305.3 |
299.9 |
C2' |
C3' |
C4' |
H4'3 |
54.8 |
59.9 |
H3'1 |
C3' |
C2' |
H3'2 |
250.6 |
119.9 |
H2'1 |
C2' |
C1' |
H1'1 |
284.3 |
180.0 |
H2'1 |
C2' |
C1' |
H1'2 |
174.8 |
300.0 |
C1' |
C2' |
H2'1 |
C3' |
234.4 |
120.1 |
C1' |
C2' |
H2'1 |
H2'2 |
117.2 |
240.0 |
C3' |
C2' |
H2'1 |
H2'2 |
242.8 |
119.9 |
H2'1 |
C2' |
C3' |
C4' |
169.8 |
300.1 |
H2'1 |
C2' |
C3' |
H3'1 |
295.1 |
179.9 |
H2'1 |
C2' |
C3' |
H3'2 |
44.5 |
60.0 |
H2'2 |
C2' |
C1' |
H1'1 |
33.8 |
60.0 |
H2'2 |
C2' |
C1' |
H1'2 |
284.3 |
180.0 |
C1' |
C2' |
H2'2 |
C3' |
125.6 |
240.0 |
C1' |
C2' |
H2'2 |
H2'1 |
242.8 |
120.0 |
C3' |
C2' |
H2'2 |
H2'1 |
117.2 |
240.0 |
H2'2 |
C2' |
C3' |
C4' |
60.3 |
60.1 |
H2'2 |
C2' |
C3' |
H3'1 |
185.6 |
299.9 |
H2'2 |
C2' |
C3' |
H3'2 |
295.0 |
180.0 |
C4' |
C3' |
C2' |
H2'1 |
169.8 |
300.1 |
C4' |
C3' |
C2' |
H2'2 |
60.3 |
60.1 |
C2' |
C3' |
C4' |
H3'1 |
125.3 |
239.8 |
C2' |
C3' |
C4' |
H3'2 |
234.7 |
119.9 |
H3'1 |
C3' |
C4' |
H3'2 |
109.4 |
240.1 |
H4'1 |
C4' |
C3' |
H4'2 |
234.7 |
240.0 |
H4'1 |
C4' |
C3' |
H4'3 |
125.2 |
120.1 |
H4'2 |
C4' |
C3' |
H4'3 |
250.5 |
240.0 |
H3'1 |
C3' |
C2' |
H2'1 |
295.1 |
179.9 |
H3'1 |
C3' |
C2' |
H2'2 |
185.6 |
299.9 |
C2' |
C3' |
H3'1 |
C4' |
233.7 |
120.2 |
C2' |
C3' |
H3'1 |
H3'2 |
116.9 |
240.0 |
C4' |
C3' |
H3'1 |
H3'2 |
243.2 |
119.9 |
H3'1 |
C3' |
C4' |
H4'1 |
54.6 |
300.1 |
H3'1 |
C3' |
C4' |
H4'2 |
180.0 |
60.1 |
H3'1 |
C3' |
C4' |
H4'3 |
289.5 |
180.1 |
H3'2 |
C3' |
C2' |
H2'1 |
44.5 |
60.0 |
H3'2 |
C3' |
C2' |
H2'2 |
295.0 |
180.0 |
C2' |
C3' |
H3'2 |
C4' |
126.3 |
240.0 |
C2' |
C3' |
H3'2 |
H3'1 |
243.1 |
120.0 |
C4' |
C3' |
H3'2 |
H3'1 |
116.8 |
240.0 |
H3'2 |
C3' |
C4' |
H4'1 |
305.3 |
60.0 |
H3'2 |
C3' |
C4' |
H4'2 |
70.6 |
180.0 |
H3'2 |
C3' |
C4' |
H4'3 |
180.1 |
299.9 |
H4'1 |
C4' |
C3' |
H3'1 |
54.6 |
300.1 |
H4'1 |
C4' |
C3' |
H3'2 |
305.3 |
60.0 |
C3' |
C4' |
H4'1 |
H4'2 |
125.3 |
119.9 |
C3' |
C4' |
H4'1 |
H4'3 |
234.8 |
239.9 |
H4'2 |
C4' |
H4'1 |
H4'3 |
109.5 |
119.9 |
H4'2 |
C4' |
C3' |
H3'1 |
180.0 |
60.1 |
H4'2 |
C4' |
C3' |
H3'2 |
70.6 |
180.0 |
C3' |
C4' |
H4'2 |
H4'1 |
233.7 |
240.0 |
C3' |
C4' |
H4'2 |
H4'3 |
116.9 |
120.0 |
H4'1 |
C4' |
H4'2 |
H4'3 |
243.2 |
240.1 |
H4'3 |
C4' |
C3' |
H3'1 |
289.5 |
180.1 |
H4'3 |
C4' |
C3' |
H3'2 |
180.1 |
299.9 |
C3' |
C4' |
H4'3 |
H4'1 |
126.2 |
120.1 |
C3' |
C4' |
H4'3 |
H4'2 |
243.1 |
240.1 |
H4'1 |
C4' |
H4'3 |
H4'2 |
116.9 |
119.9 |