PDB Chemical Component N41

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N41

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N1 1.372 1.326
C2 N3 1.367 1.323
C2 N2 1.371 1.387
C10 C11 1.524 1.530
C10 O6 1.437 1.429
C10 H101 1.100 1.090
C10 H102 1.100 1.089
C11 C12 1.542 1.530
C11 C16 1.546 1.529
C11 H11 1.100 1.090
C12 C13 1.546 1.530
C12 H121 1.100 1.090
C12 H122 1.100 1.089
C13 C14 1.539 1.529
C13 H131 1.100 1.090
C13 H132 1.100 1.089
C14 C15 1.540 1.530
C14 H141 1.100 1.090
C14 H142 1.100 1.090
C15 C16 1.521 1.529
C15 H151 1.101 1.088
C15 H152 1.100 1.089
C16 H161 1.100 1.091
C16 H162 1.100 1.090
C19 C20 1.384 1.398
C19 C18 1.402 1.376
C19 H19 1.062 1.080
C20 C21 1.402 1.397
C20 C23 1.520 1.475
C21 C22 1.399 1.377
C21 H21 1.062 1.080
C22 C17 1.394 1.391
C22 H22 1.062 1.079
N25 C23 1.348 1.348
N25 H251 0.995 0.970
N25 H252 0.994 0.969
N1 C6 1.358 1.326
C6 O6 1.377 1.355
C6 C5 1.475 1.403
C5 N7 1.366 1.356
C5 C4 1.438 1.406
N7 C8 1.398 1.300
N9 C4 1.385 1.373
N9 C8 1.392 1.364
N9 H9 0.995 0.970
C4 N3 1.344 1.328
N2 C17 1.364 1.391
N2 H2 0.995 0.971
C17 C18 1.403 1.393
C18 H18 1.061 1.080
C23 O24 1.229 1.215
C8 H8 1.061 1.079

Bond Angles for N41

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C2 N3 121.4 122.3
N1 C2 N2 120.3 118.8
C2 N1 C6 122.5 121.1
N3 C2 N2 118.3 118.9
C2 N3 C4 120.2 120.6
C2 N2 C17 123.3 120.0
C2 N2 H2 118.3 120.0
C11 C10 O6 111.3 109.4
C11 C10 H101 109.0 109.4
C11 C10 H102 108.4 109.5
C10 C11 C12 109.9 109.5
C10 C11 C16 109.7 109.5
C10 C11 H11 111.0 109.5
O6 C10 H101 109.0 109.5
O6 C10 H102 108.4 109.5
C10 O6 C6 116.7 106.8
H101 C10 H102 110.7 109.5
C12 C11 C16 114.8 109.4
C12 C11 H11 105.6 109.4
C11 C12 C13 115.0 109.5
C11 C12 H121 108.1 109.4
C11 C12 H122 106.2 109.5
C16 C11 H11 105.7 109.4
C11 C16 C15 109.2 109.6
C11 C16 H161 109.5 109.5
C11 C16 H162 109.6 109.5
C13 C12 H121 108.1 109.5
C13 C12 H122 106.2 109.5
C12 C13 C14 113.3 109.5
C12 C13 H131 108.5 109.5
C12 C13 H132 107.2 109.5
H121 C12 H122 113.4 109.4
C14 C13 H131 108.5 109.4
C14 C13 H132 107.2 109.5
C13 C14 C15 112.0 109.5
C13 C14 H141 108.8 109.4
C13 C14 H142 108.0 109.4
H131 C13 H132 112.1 109.5
C15 C14 H141 108.8 109.4
C15 C14 H142 108.0 109.5
C14 C15 C16 109.3 109.4
C14 C15 H151 109.5 109.4
C14 C15 H152 109.5 109.4
H141 C14 H142 111.2 109.5
C16 C15 H151 109.5 109.5
C16 C15 H152 109.6 109.5
C15 C16 H161 109.5 109.5
C15 C16 H162 109.6 109.4
H151 C15 H152 109.4 109.6
H161 C16 H162 109.3 109.4
C20 C19 C18 120.2 120.0
C20 C19 H19 119.9 120.0
C19 C20 C21 118.2 119.8
C19 C20 C23 121.4 120.1
C18 C19 H19 119.9 120.0
C19 C18 C17 121.5 120.0
C19 C18 H18 119.2 120.0
C21 C20 C23 120.4 120.1
C20 C21 C22 122.2 120.0
C20 C21 H21 118.9 120.0
C20 C23 N25 119.8 120.0
C20 C23 O24 118.7 120.0
C22 C21 H21 118.9 120.0
C21 C22 C17 119.4 120.1
C21 C22 H22 120.3 119.9
C17 C22 H22 120.3 120.0
C22 C17 N2 121.5 120.0
C22 C17 C18 118.6 120.1
C23 N25 H251 120.0 120.0
C23 N25 H252 120.0 120.0
N25 C23 O24 121.5 120.0
H251 N25 H252 120.0 120.1
N1 C6 O6 121.0 120.7
N1 C6 C5 117.4 118.7
O6 C6 C5 121.5 120.6
C6 C5 N7 135.2 134.7
C6 C5 C4 117.2 118.2
N7 C5 C4 107.6 107.1
C5 N7 C8 104.3 109.6
C5 C4 N9 111.5 106.0
C5 C4 N3 121.3 119.1
N7 C8 N9 115.4 109.9
N7 C8 H8 122.3 125.1
C4 N9 C8 101.2 107.5
C4 N9 H9 129.4 126.3
N9 C4 N3 127.2 134.9
C8 N9 H9 129.4 126.3
N9 C8 H8 122.3 125.0
C17 N2 H2 118.3 120.0
N2 C17 C18 120.0 119.9
C17 C18 H18 119.3 119.9

Torsion Angles for N41

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C2 N1 N2 180.9 179.7
N1 C2 N3 C4 0.3 0.3
N1 C2 N2 C17 346.1 354.2
N1 C2 N2 H2 166.1 174.1
C2 N1 C6 O6 178.9 180.3
C2 N1 C6 C5 359.5 0.4
N1 C2 N3 N2 179.1 180.3
N3 C2 N1 C6 0.5 359.5
N3 C2 N2 C17 165.2 174.4
N3 C2 N2 H2 345.2 354.4
C5 C4 N3 C2 359.0 0.0
N9 C4 N3 C2 180.2 180.0
N1 C2 N2 N3 180.9 179.7
N2 C2 N1 C6 179.6 179.8
N2 C2 N3 C4 181.2 180.0
C22 C17 N2 C2 335.4 145.7
C17 N2 C2 H2 180.0 180.1
C2 N2 C17 C18 156.2 325.6
O6 C10 C11 H101 239.7 119.9
O6 C10 C11 H102 119.1 240.0
C11 C10 O6 C6 157.7 180.1
H101 C10 C11 H102 239.4 120.1
C12 C11 C10 C16 232.9 240.0
C12 C11 C10 H11 116.4 120.0
C10 C11 C12 C13 164.9 180.0
C10 C11 C12 H121 285.7 300.0
C10 C11 C12 H122 47.7 59.9
C16 C11 C10 H11 243.5 240.0
C10 C11 C16 C15 183.2 180.0
C10 C11 C16 H161 303.1 300.1
C10 C11 C16 H162 63.1 60.0
C11 C10 O6 H101 120.3 240.1
C11 C10 O6 H102 240.9 120.0
O6 C10 C11 C12 157.4 180.0
O6 C10 C11 C16 284.5 300.0
O6 C10 C11 H11 41.0 60.0
H101 C10 O6 H102 120.6 239.9
N1 C6 O6 C10 20.3 0.2
C10 O6 C6 C5 199.6 180.0
C11 C10 H101 O6 238.3 119.9
C11 C10 H101 H102 119.1 240.0
H101 C10 C11 C12 277.6 60.1
H101 C10 C11 C16 44.7 180.0
H101 C10 C11 H11 161.2 300.1
O6 C10 H101 H102 240.8 120.0
H101 C10 O6 C6 37.4 300.0
C11 C10 H102 O6 120.9 240.0
C11 C10 H102 H101 240.5 120.0
H102 C10 C11 C12 38.2 300.0
H102 C10 C11 C16 165.3 60.0
H102 C10 C11 H11 281.8 180.0
O6 C10 H102 H101 119.5 240.0
H102 C10 O6 C6 276.8 60.0
C12 C11 C10 O6 157.4 180.0
C12 C11 C10 H101 277.6 60.1
C12 C11 C10 H102 38.2 300.0
C10 C11 C12 C16 124.2 120.0
C10 C11 C12 H11 240.2 239.9
C16 C11 C12 H11 116.0 119.9
C12 C11 C16 C15 307.4 300.0
C12 C11 C16 H161 67.4 60.1
C12 C11 C16 H162 187.3 180.0
C13 C12 C11 H121 239.2 240.0
C13 C12 C11 H122 117.2 120.0
C11 C12 C13 C14 321.7 300.0
C11 C12 C13 H131 82.3 60.0
C11 C12 C13 H132 203.7 180.0
H121 C12 C11 H122 238.0 240.1
C16 C11 C10 O6 284.5 300.0
C16 C11 C10 H101 44.7 180.0
C16 C11 C10 H102 165.3 60.0
C10 C11 C16 C12 235.7 240.0
C10 C11 C16 H11 119.8 120.1
C12 C11 C16 H11 244.1 240.1
C16 C11 C12 C13 40.7 60.0
C16 C11 C12 H121 161.5 180.0
C16 C11 C12 H122 283.5 299.9
C14 C15 C16 C11 62.3 60.0
C11 C16 C15 H151 182.3 300.1
C11 C16 C15 H152 302.3 179.9
C15 C16 C11 H161 240.0 239.9
C15 C16 C11 H162 120.1 120.0
H161 C16 C11 H162 240.1 240.1
H11 C11 C10 O6 41.0 60.0
H11 C11 C10 H101 161.2 300.1
H11 C11 C10 H102 281.8 180.0
C10 C11 H11 C12 119.0 120.0
C10 C11 H11 C16 241.1 239.9
C12 C11 H11 C16 122.0 119.9
H11 C11 C12 C13 284.7 300.0
H11 C11 C12 H121 45.5 60.1
H11 C11 C12 H122 167.5 180.0
H11 C11 C16 C15 63.4 59.9
H11 C11 C16 H161 183.3 180.0
H11 C11 C16 H162 303.3 299.9
C13 C12 C11 C16 40.7 60.0
C13 C12 C11 H11 284.7 300.0
C11 C12 C13 H121 120.8 120.0
C11 C12 C13 H122 242.8 240.0
H121 C12 C13 H122 122.0 120.0
C14 C13 C12 H131 239.4 240.1
C14 C13 C12 H132 118.1 120.0
C12 C13 C14 C15 49.0 60.0
C12 C13 C14 H141 169.4 180.0
C12 C13 C14 H142 290.2 299.9
H131 C13 C12 H132 238.7 240.0
H121 C12 C11 C16 161.5 180.0
H121 C12 C11 H11 45.5 60.1
C11 C12 H121 C13 235.0 240.0
C11 C12 H121 H122 117.5 119.9
C13 C12 H121 H122 242.5 240.0
H121 C12 C13 C14 200.9 180.0
H121 C12 C13 H131 321.5 300.0
H121 C12 C13 H132 82.9 60.0
H122 C12 C11 C16 283.5 299.9
H122 C12 C11 H11 167.5 180.0
C11 C12 H122 C13 122.9 120.0
C11 C12 H122 H121 241.4 240.1
C13 C12 H122 H121 118.5 120.0
H122 C12 C13 C14 78.9 60.1
H122 C12 C13 H131 199.5 180.0
H122 C12 C13 H132 320.9 300.0
C14 C13 C12 H121 200.9 180.0
C14 C13 C12 H122 78.9 60.1
C12 C13 C14 H131 120.6 120.0
C12 C13 C14 H132 241.9 239.9
H131 C13 C14 H132 121.3 120.0
C15 C14 C13 H141 239.6 240.0
C15 C14 C13 H142 118.8 120.1
C13 C14 C15 C16 298.0 300.0
C13 C14 C15 H151 178.0 60.0
C13 C14 C15 H152 58.0 180.1
H141 C14 C13 H142 239.2 240.1
H131 C13 C12 H121 321.5 300.0
H131 C13 C12 H122 199.5 180.0
C12 C13 H131 C14 236.5 240.0
C12 C13 H131 H132 118.3 120.1
C14 C13 H131 H132 241.8 240.0
H131 C13 C14 C15 288.4 300.0
H131 C13 C14 H141 48.8 60.0
H131 C13 C14 H142 169.6 180.0
H132 C13 C12 H121 82.9 60.0
H132 C13 C12 H122 320.9 300.0
C12 C13 H132 C14 122.0 120.0
C12 C13 H132 H131 241.0 240.0
C14 C13 H132 H131 119.0 119.9
H132 C13 C14 C15 167.1 180.1
H132 C13 C14 H141 287.5 300.0
H132 C13 C14 H142 48.3 60.0
C11 C16 C15 C14 62.3 60.0
C15 C14 C13 H131 288.4 300.0
C15 C14 C13 H132 167.1 180.1
C13 C14 C15 H141 120.4 120.0
C13 C14 C15 H142 241.2 240.0
H141 C14 C15 H142 120.8 120.0
C16 C15 C14 H151 120.0 240.0
C16 C15 C14 H152 239.9 120.0
C14 C15 C16 H161 302.4 299.9
C14 C15 C16 H162 182.4 180.0
H151 C15 C14 H152 120.0 239.9
H141 C14 C13 H131 48.8 60.0
H141 C14 C13 H132 287.5 300.0
C13 C14 H141 C15 237.7 240.0
C13 C14 H141 H142 118.8 119.9
C15 C14 H141 H142 241.2 240.0
H141 C14 C15 C16 177.6 180.0
H141 C14 C15 H151 57.6 300.0
H141 C14 C15 H152 297.7 60.1
H142 C14 C13 H131 169.6 180.0
H142 C14 C13 H132 48.3 60.0
C13 C14 H142 C15 121.3 120.1
C13 C14 H142 H141 240.6 240.1
C15 C14 H142 H141 119.3 120.0
H142 C14 C15 C16 56.8 60.0
H142 C14 C15 H151 296.8 180.0
H142 C14 C15 H152 176.8 300.1
C15 C16 C11 H11 63.4 59.9
C11 C16 C15 H161 119.9 120.1
C11 C16 C15 H162 239.9 240.0
C16 C15 C14 H141 177.6 180.0
C16 C15 C14 H142 56.8 60.0
C14 C15 C16 H151 240.0 119.9
C14 C15 C16 H152 120.0 240.1
H151 C15 C16 H152 240.0 120.2
H161 C16 C15 H162 120.0 119.9
H151 C15 C14 H141 57.6 300.0
H151 C15 C14 H142 296.8 180.0
C14 C15 H151 C16 119.9 240.1
C14 C15 H151 H152 239.9 120.0
C16 C15 H151 H152 120.1 239.9
H151 C15 C16 H161 62.4 180.0
H151 C15 C16 H162 302.4 60.1
H152 C15 C14 H141 297.7 60.1
H152 C15 C14 H142 176.8 300.1
C14 C15 H152 C16 240.1 119.9
C14 C15 H152 H151 120.0 240.0
C16 C15 H152 H151 239.9 120.1
H152 C15 C16 H161 182.4 59.8
H152 C15 C16 H162 62.4 299.9
H161 C16 C11 H11 183.3 180.0
C11 C16 H161 C15 240.2 239.9
C11 C16 H161 H162 120.1 119.9
H161 C16 C15 H151 62.4 180.0
H161 C16 C15 H152 182.4 59.8
C15 C16 H161 H162 239.9 240.1
H162 C16 C11 H11 303.3 299.9
C11 C16 H162 C15 119.9 120.1
C11 C16 H162 H161 240.0 240.1
H162 C16 C15 H151 302.4 60.1
H162 C16 C15 H152 62.4 299.9
C15 C16 H162 H161 120.1 120.0
C18 C19 C20 H19 180.0 179.3
C20 C19 C18 C17 359.7 0.7
C20 C19 C18 H18 179.7 180.3
C21 C20 C19 C23 181.6 179.7
C19 C20 C21 C22 359.5 0.4
C19 C20 C21 H21 179.5 180.3
C19 C20 C23 N25 145.8 359.7
C19 C20 C23 O24 323.4 179.7
C20 C19 C18 H19 180.0 180.7
C18 C19 C20 C21 0.1 359.3
C18 C19 C20 C23 178.5 179.7
C22 C17 C18 C19 0.8 359.6
N2 C17 C18 C19 180.1 179.7
C17 C18 C19 H18 180.0 180.3
C20 C19 H19 C18 180.0 179.3
H19 C19 C20 C21 180.1 180.0
H19 C19 C20 C23 358.5 0.4
H19 C19 C18 C17 179.7 180.0
H19 C19 C18 H18 359.7 359.6
C21 C20 C19 C18 0.1 359.3
C21 C20 C19 H19 180.1 180.0
C19 C20 C21 C23 178.4 180.3
C21 C20 C23 N25 324.1 180.0
C21 C20 C23 O24 141.7 0.1
C22 C21 C20 H21 180.0 180.1
C20 C21 C22 C17 1.0 359.9
C20 C21 C22 H22 181.0 180.0
C23 C20 C19 C18 178.5 179.7
C23 C20 C19 H19 358.5 0.4
C19 C20 C23 C21 181.7 179.7
C23 C20 C21 C22 181.2 180.0
C23 C20 C21 H21 1.1 359.9
C20 C23 N25 H251 360.0 180.1
C20 C23 N25 H252 180.0 359.7
N25 C23 C20 O24 182.4 179.9
C22 C21 C20 C23 181.2 180.0
C20 C21 C22 H21 180.0 179.9
C17 C22 C21 H22 180.0 179.9
C21 C22 C17 N2 179.6 180.0
C21 C22 C17 C18 358.9 0.1
H21 C21 C20 C23 1.1 359.9
C20 C21 H21 C22 180.0 180.1
H21 C21 C22 C17 181.0 180.0
H21 C21 C22 H22 1.0 0.1
C2 N2 C17 C22 335.4 145.7
C19 C18 C17 C22 0.8 359.6
C17 C22 C21 H21 181.0 180.0
C21 C22 C17 H22 180.0 180.1
C22 C17 N2 H2 155.4 325.7
N2 C17 C22 C18 180.8 180.0
C22 C17 C18 H18 180.8 180.0
H22 C22 C21 H21 1.0 0.1
C21 C22 H22 C17 180.0 179.9
H22 C22 C17 N2 359.7 360.0
H22 C22 C17 C18 178.9 180.0
C20 C23 N25 O24 177.5 180.1
H251 N25 C23 H252 180.0 180.4
C23 N25 H251 H252 180.0 179.6
H251 N25 C23 O24 182.5 0.0
C23 N25 H252 H251 180.0 180.4
H252 N25 C23 O24 2.5 179.6
C6 N1 C2 N3 0.5 359.5
C6 N1 C2 N2 179.6 179.8
C10 O6 C6 N1 20.3 0.2
O6 C6 N1 C5 179.4 179.8
N1 C6 C5 N7 179.6 179.8
N1 C6 C5 C4 359.8 359.8
C6 O6 C10 H101 37.4 300.0
C6 O6 C10 H102 276.8 60.0
N1 C6 O6 C5 180.6 180.2
O6 C6 C5 N7 0.3 360.0
O6 C6 C5 C4 180.4 180.0
N1 C6 C5 O6 179.4 179.8
N7 C5 C6 C4 179.9 179.9
C6 C5 N7 C8 180.3 180.1
C6 C5 C4 N9 179.9 180.0
C6 C5 C4 N3 1.0 359.9
C6 C5 N7 C4 180.1 180.0
N7 C5 C4 N9 0.0 0.0
N7 C5 C4 N3 181.1 180.0
C5 N7 C8 N9 359.6 360.0
C5 N7 C8 H8 179.6 180.0
C2 N3 C4 C5 359.0 0.0
C6 C5 C4 N7 179.9 180.0
C4 C5 N7 C8 0.2 0.0
C5 C4 N9 C8 359.8 360.0
C5 C4 N9 H9 179.8 180.0
N9 C4 C5 N3 178.9 180.1
C8 N7 C5 C4 0.2 0.0
C4 N9 C8 N7 0.4 0.0
N7 C8 N9 H9 180.4 180.0
N9 C8 N7 H8 180.0 180.0
C2 N3 C4 N9 180.2 180.0
C5 C4 N9 N3 181.2 179.9
N7 C8 N9 C4 0.4 0.0
C8 N9 C4 H9 180.0 179.9
C4 N9 C8 H8 180.4 180.0
N7 C8 N9 H8 180.0 180.0
C4 N9 C8 H9 180.0 180.1
C8 N9 C4 N3 178.6 180.0
C4 N9 H9 C8 180.0 179.9
H9 N9 C4 N3 358.6 0.1
H9 N9 C8 H8 0.4 360.0
C4 N3 C2 N2 181.2 180.0
C5 C4 N3 N9 178.7 180.1
N3 C4 N9 C8 178.6 180.0
N3 C4 N9 H9 358.6 0.1
C2 N2 C17 H2 180.0 179.9
C19 C18 C17 N2 180.1 179.7
N2 C17 C22 H22 359.7 360.0
C22 C17 N2 C18 179.2 180.0
N2 C17 C18 H18 0.1 0.0
C2 N2 H2 C17 180.0 180.1
H2 N2 C17 C18 336.2 145.7
C17 C18 C19 H19 179.7 180.0
C19 C18 C17 H18 180.0 179.7
C18 C17 C22 H22 178.9 180.0
C22 C17 C18 N2 180.8 180.0
C18 C17 N2 H2 336.2 145.7
H18 C18 C19 H19 359.7 359.6
C19 C18 H18 C17 180.0 180.3
C20 C23 O24 N25 182.5 179.9
O24 C23 N25 H251 182.5 0.0
O24 C23 N25 H252 2.5 179.6
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 H9 0.4 360.0