PDB Chemical Component N3T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N3T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1' C2' 1.363 1.320
N1' C6' 1.376 1.321
C2' CM2 1.467 1.507
C2' C3' 1.394 1.379
CM2 HM21 1.115 1.090
CM2 HM22 1.116 1.090
CM2 HM23 1.115 1.089
C3' C4' 1.406 1.395
C3' H3' 1.103 1.080
C4' N4' 1.291 1.392
C4' C5' 1.420 1.395
N4' HN41 1.020 0.969
N4' HN42 1.020 0.970
C5' C6' 1.343 1.378
C5' C7' 1.513 1.507
C6' H6' 1.103 1.079
C7' N3 1.545 1.465
C7' H7'1 1.115 1.090
C7' H7'2 1.115 1.089
N3 C2 1.353 1.313
N3 C4 1.326 1.317
C2 S1 1.679 1.737
C2 H2 1.103 1.080
S1 C5 1.733 1.787
C5 C4 1.350 1.357
C5 C6 1.500 1.508
C4 CM4 1.512 1.508
CM4 HM41 1.116 1.090
CM4 HM42 1.114 1.090
CM4 HM43 1.116 1.090
C6 C7 1.478 1.530
C6 H61 1.115 1.090
C6 H62 1.116 1.090
C7 O7 1.416 1.428
C7 H71 1.114 1.090
C7 H72 1.115 1.090
O7 PA 1.533 1.610
PA O1A 1.490 1.610
PA O2A 1.511 1.480
PA O3A 1.605 1.610
O2A HOA2 0.950  
O3A PB 1.597 1.610
PB O1B 1.464 1.609
PB O2B 1.494 1.544
PB O3B 1.458 1.546
O3B HOB3 0.949  

Bond Angles for N3T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' N1' C6' 120.7 121.9
N1' C2' CM2 118.2 119.6
N1' C2' C3' 119.5 120.9
N1' C6' C5' 120.3 120.8
N1' C6' H6' 121.0 119.6
CM2 C2' C3' 119.5 119.6
C2' CM2 HM21 118.2 109.5
C2' CM2 HM22 109.1 109.4
C2' CM2 HM23 109.1 109.5
C2' C3' C4' 115.6 119.1
C2' C3' H3' 121.8 120.5
HM21 CM2 HM22 109.0 109.5
HM21 CM2 HM23 109.1 109.5
HM22 CM2 HM23 101.0 109.5
C4' C3' H3' 122.6 120.4
C3' C4' N4' 116.2 120.9
C3' C4' C5' 121.1 118.2
N4' C4' C5' 122.2 120.9
C4' N4' HN41 116.2 120.0
C4' N4' HN42 109.7 120.0
C4' C5' C6' 115.2 119.1
C4' C5' C7' 121.2 120.4
HN41 N4' HN42 109.8 120.0
C6' C5' C7' 120.5 120.5
C5' C6' H6' 118.7 119.6
C5' C7' N3 114.8 109.5
C5' C7' H7'1 110.2 109.5
C5' C7' H7'2 110.2 109.5
N3 C7' H7'1 110.3 109.4
N3 C7' H7'2 110.3 109.5
C7' N3 C2 125.4 119.3
C7' N3 C4 120.4 119.3
H7'1 C7' H7'2 100.0 109.5
C2 N3 C4 114.1 121.4
N3 C2 S1 112.0 102.2
N3 C2 H2 114.9 128.9
N3 C4 C5 112.4 118.4
N3 C4 CM4 120.6 120.8
S1 C2 H2 133.1 128.9
C2 S1 C5 89.5 97.4
S1 C5 C4 111.0 100.6
S1 C5 C6 123.5 129.7
C4 C5 C6 125.4 129.7
C5 C4 CM4 126.5 120.8
C5 C6 C7 117.5 109.5
C5 C6 H61 109.3 109.4
C5 C6 H62 109.3 109.5
C4 CM4 HM41 120.6 109.4
C4 CM4 HM42 108.2 109.4
C4 CM4 HM43 108.2 109.5
HM41 CM4 HM42 108.2 109.5
HM41 CM4 HM43 108.1 109.6
HM42 CM4 HM43 101.7 109.5
C7 C6 H61 109.3 109.5
C7 C6 H62 109.3 109.5
C6 C7 O7 96.6 109.4
C6 C7 H71 117.2 109.5
C6 C7 H72 117.2 109.5
H61 C6 H62 100.8 109.5
O7 C7 H71 117.2 109.5
O7 C7 H72 117.2 109.5
C7 O7 PA 122.9 106.8
H71 C7 H72 93.2 109.5
O7 PA O1A 105.4 109.5
O7 PA O2A 110.8 109.5
O7 PA O3A 108.8 109.5
O1A PA O2A 116.0 109.5
O1A PA O3A 110.7 109.5
O2A PA O3A 105.1 109.4
PA O2A HOA2 110.8  
PA O3A PB 137.2 106.8
O3A PB O1B 105.9 109.5
O3A PB O2B 99.5 109.5
O3A PB O3B 100.3 109.4
O1B PB O2B 118.3 109.5
O1B PB O3B 116.0 109.5
O2B PB O3B 113.2 109.5
PB O3B HOB3 100.3  

Torsion Angles for N3T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2' N1' C6' C5' 0.8 0.5
C2' N1' C6' H6' 180.8 180.2
CM2 C2' N1' C3' 199.0 180.2
N1' C2' CM2 HM21 180.0 269.8
N1' C2' CM2 HM22 305.3 29.8
N1' C2' CM2 HM23 54.7 149.8
N1' C2' C3' C4' 13.3 0.2
N1' C2' C3' H3' 193.3 180.2
C6' N1' C2' CM2 179.2 179.8
C6' N1' C2' C3' 340.2 359.6
C4' C5' C6' N1' 22.4 359.7
N1' C6' C5' C7' 182.8 179.8
C5' C6' N1' H6' 179.9 180.3
CM2 C2' N1' C6' 179.2 179.8
N1' C2' CM2 C3' 161.0 179.8
CM2 C2' C3' C4' 174.1 180.0
CM2 C2' C3' H3' 354.1 0.0
HM21 CM2 C2' HM22 234.8 240.0
HM21 CM2 C2' HM23 125.3 120.0
HM22 CM2 C2' HM23 250.6 240.0
C3' C2' N1' C6' 340.2 359.6
N1' C2' C3' CM2 199.2 180.2
C3' C2' CM2 HM21 19.0 90.0
C3' C2' CM2 HM22 144.2 210.0
C3' C2' CM2 HM23 253.7 330.0
C4' C3' C2' H3' 180.0 179.9
C2' C3' C4' N4' 182.3 180.0
C2' C3' C4' C5' 10.7 0.0
HM21 CM2 C2' C3' 19.0 90.0
C2' CM2 HM21 HM22 125.3 119.9
C2' CM2 HM21 HM23 234.7 240.0
HM22 CM2 HM21 HM23 109.4 120.0
HM22 CM2 C2' C3' 144.2 210.0
C2' CM2 HM22 HM21 229.6 240.0
C2' CM2 HM22 HM23 114.8 120.0
HM21 CM2 HM22 HM23 245.2 239.9
HM23 CM2 C2' C3' 253.7 330.0
C2' CM2 HM23 HM21 130.5 120.0
C2' CM2 HM23 HM22 245.2 240.0
HM21 CM2 HM23 HM22 114.7 120.0
C2' C3' C4' H3' 180.0 180.1
N4' C4' C3' C5' 171.6 180.0
C3' C4' N4' HN41 180.0 0.0
C3' C4' N4' HN42 54.7 180.0
C3' C4' C5' C6' 331.4 0.0
C3' C4' C5' C7' 171.2 180.0
C2' C3' H3' C4' 180.0 179.9
H3' C3' C4' N4' 2.3 360.0
H3' C3' C4' C5' 190.7 180.0
N4' C4' C3' H3' 2.3 360.0
C3' C4' N4' C5' 188.5 180.0
N4' C4' C5' C6' 160.4 180.0
N4' C4' C5' C7' 0.1 360.0
HN41 N4' C4' HN42 125.3 180.0
N1' C6' C5' C4' 22.4 359.7
C5' C4' C3' H3' 190.7 180.0
C3' C4' C5' N4' 171.1 180.0
C5' C4' N4' HN41 351.5 180.0
C5' C4' N4' HN42 226.2 0.0
C6' C5' C4' C7' 160.2 180.0
C4' C5' C6' H6' 202.4 180.0
C4' C5' C7' N3 288.3 85.0
C4' C5' C7' H7'1 53.6 205.0
C4' C5' C7' H7'2 163.1 325.0
HN41 N4' C4' C5' 351.5 180.0
C4' N4' HN41 HN42 234.8 180.0
HN42 N4' C4' C5' 226.2 0.0
C4' N4' HN42 HN41 128.9 180.0
N1' C6' C5' H6' 180.1 179.7
C4' C5' C6' C7' 199.6 180.0
C6' C5' C7' N3 129.1 265.0
C6' C5' C7' H7'1 254.4 25.0
C6' C5' C7' H7'2 3.9 145.0
C4' C5' C7' C6' 159.2 180.0
C7' C5' C6' H6' 2.7 0.0
N3 C7' C5' H7'1 234.7 240.0
N3 C7' C5' H7'2 125.2 120.0
C5' C7' N3 C2 87.0 266.0
C5' C7' N3 C4 265.9 85.7
H7'1 C7' C5' H7'2 250.5 240.0
N1' C6' H6' C5' 179.9 180.3
H6' C6' C5' C7' 2.7 0.0
C5' C7' N3 H7'1 125.2 120.0
C5' C7' N3 H7'2 234.8 239.9
H7'1 C7' N3 H7'2 109.6 120.0
C2 N3 C7' C4 181.1 180.3
C7' N3 C2 S1 182.8 180.0
C7' N3 C2 H2 2.8 360.0
C7' N3 C4 C5 172.0 179.7
C7' N3 C4 CM4 359.1 0.2
C5' C7' H7'1 N3 232.2 240.0
C5' C7' H7'1 H7'2 116.1 120.0
N3 C7' H7'1 H7'2 243.9 240.0
H7'1 C7' N3 C2 321.8 146.1
H7'1 C7' N3 C4 140.7 325.7
C5' C7' H7'2 N3 127.8 120.0
C5' C7' H7'2 H7'1 243.9 240.0
N3 C7' H7'2 H7'1 116.2 120.0
H7'2 C7' N3 C2 212.3 26.1
H7'2 C7' N3 C4 31.1 205.8
C2 N3 C7' H7'1 321.8 146.1
C2 N3 C7' H7'2 212.3 26.1
C7' N3 C2 C4 178.9 179.7
C2 N3 C4 C5 351.0 359.4
C2 N3 C4 CM4 178.1 179.9
S1 C2 N3 H2 180.1 180.0
N3 C2 S1 C5 1.6 360.0
C4 N3 C7' H7'1 140.7 325.7
C4 N3 C7' H7'2 31.1 205.8
C7' N3 C4 C2 181.0 180.3
C4 N3 C2 S1 3.9 0.3
C4 N3 C2 H2 183.8 180.3
S1 C5 C4 N3 10.0 0.5
N3 C4 C5 C6 188.0 180.2
C5 C4 N3 CM4 172.8 179.5
N3 C4 CM4 HM41 179.9 275.1
N3 C4 CM4 HM42 305.3 35.0
N3 C4 CM4 HM43 54.8 155.0
S1 C2 N3 C4 3.9 0.3
N3 C2 S1 H2 179.9 180.0
C2 S1 C5 C4 353.5 359.7
C2 S1 C5 C6 175.4 180.0
H2 C2 N3 C4 183.8 180.3
N3 C2 H2 S1 180.1 180.0
H2 C2 S1 C5 181.6 180.0
N3 C4 C5 S1 10.0 0.5
C5 S1 C2 H2 181.6 180.0
C4 C5 S1 C6 178.1 179.7
S1 C5 C4 CM4 182.3 180.0
S1 C5 C6 C7 21.8 270.0
S1 C5 C6 H61 147.1 30.0
S1 C5 C6 H62 256.5 150.0
N3 C4 C5 CM4 187.7 180.5
S1 C5 C4 C6 182.0 180.3
C4 C5 C6 C7 204.0 90.3
C4 C5 C6 H61 329.3 210.3
C4 C5 C6 H62 78.7 330.3
C5 C4 CM4 HM41 8.2 95.6
C5 C4 CM4 HM42 133.5 215.5
C5 C4 CM4 HM43 243.0 335.5
S1 C5 C6 C4 177.8 179.7
C6 C5 C4 CM4 0.3 359.7
C7 C6 C5 H61 234.7 240.0
C7 C6 C5 H62 125.3 120.0
C5 C6 C7 O7 285.9 180.0
C5 C6 C7 H71 51.1 300.0
C5 C6 C7 H72 160.6 60.0
H61 C6 C5 H62 250.6 240.0
N3 C4 CM4 C5 171.8 179.5
CM4 C4 C5 C6 0.3 359.7
HM41 CM4 C4 HM42 234.7 240.1
HM41 CM4 C4 HM43 125.2 120.1
HM42 CM4 C4 HM43 250.5 240.0
C4 CM4 HM41 HM42 125.3 119.9
C4 CM4 HM41 HM43 234.8 240.0
HM42 CM4 HM41 HM43 109.5 120.1
C4 CM4 HM42 HM41 227.7 240.1
C4 CM4 HM42 HM43 113.9 120.0
HM41 CM4 HM42 HM43 246.2 239.9
C4 CM4 HM43 HM41 132.3 120.0
C4 CM4 HM43 HM42 246.1 240.1
HM41 CM4 HM43 HM42 113.8 120.0
C5 C6 C7 H61 125.3 120.0
C5 C6 C7 H62 234.7 240.0
H61 C6 C7 H62 109.4 120.0
O7 C7 C6 H71 234.7 240.0
O7 C7 C6 H72 125.2 120.0
C6 C7 O7 PA 197.9 180.0
H71 C7 C6 H72 250.5 240.0
C5 C6 H61 C7 230.1 240.0
C5 C6 H61 H62 115.1 120.0
C7 C6 H61 H62 245.0 239.9
H61 C6 C7 O7 160.6 60.0
H61 C6 C7 H71 285.8 180.0
H61 C6 C7 H72 35.3 300.0
C5 C6 H62 C7 129.9 120.0
C5 C6 H62 H61 244.9 240.0
C7 C6 H62 H61 115.0 120.1
H62 C6 C7 O7 51.2 300.0
H62 C6 C7 H71 176.4 60.0
H62 C6 C7 H72 285.9 180.0
O7 C7 C6 H61 160.6 60.0
O7 C7 C6 H62 51.2 300.0
C6 C7 O7 H71 125.2 120.0
C6 C7 O7 H72 234.8 240.0
H71 C7 O7 H72 109.5 120.0
C7 O7 PA O1A 171.7 295.0
C7 O7 PA O2A 45.5 55.0
C7 O7 PA O3A 290.5 175.0
H71 C7 C6 H61 285.8 180.0
H71 C7 C6 H62 176.4 60.0
C6 C7 H71 O7 245.8 240.0
C6 C7 H71 H72 122.9 120.0
O7 C7 H71 H72 237.1 239.9
H71 C7 O7 PA 72.6 60.0
H72 C7 C6 H61 35.3 300.0
H72 C7 C6 H62 285.9 180.0
C6 C7 H72 O7 114.2 120.0
C6 C7 H72 H71 237.1 240.0
O7 C7 H72 H71 122.9 120.1
H72 C7 O7 PA 323.1 300.0
PA O7 C7 H71 72.6 60.0
PA O7 C7 H72 323.1 300.0
O1A PA O7 O2A 126.2 240.0
O1A PA O7 O3A 241.2 120.0
O2A PA O7 O3A 115.1 240.0
O7 PA O2A HOA2 180.0  
O7 PA O3A PB 113.0 200.0
O7 PA O1A O2A 237.1 120.0
O7 PA O1A O3A 117.5 240.0
O2A PA O1A O3A 240.4 119.9
O1A PA O2A HOA2 59.9  
O1A PA O3A PB 228.4 79.9
O7 PA O2A O1A 120.0 240.0
O7 PA O2A O3A 242.6 120.0
O1A PA O2A O3A 122.6 240.0
O2A PA O3A PB 354.3 320.0
O7 PA O3A O1A 244.6 120.1
O7 PA O3A O2A 118.7 240.0
O1A PA O3A O2A 234.1 120.0
O3A PA O2A HOA2 297.3  
PA O3A PB O1B 164.8 165.0
PA O3A PB O2B 41.6 285.0
PA O3A PB O3B 285.7 45.0
HOA2 O2A PA O3A 297.3  
O1B PB O3A O2B 123.1 240.0
O1B PB O3A O3B 239.1 120.0
O2B PB O3A O3B 115.9 240.0
O3A PB O3B HOB3 180.0  
O3A PB O1B O2B 249.6 120.0
O3A PB O1B O3B 110.2 240.0
O2B PB O1B O3B 220.5 120.0
O1B PB O3B HOB3 293.4  
O3A PB O2B O1B 113.9 240.0
O3A PB O2B O3B 254.4 120.0
O1B PB O2B O3B 140.5 240.0
O2B PB O3B HOB3 74.9  
O3A PB O3B O1B 246.6 120.0
O3A PB O3B O2B 105.1 240.0
O1B PB O3B O2B 218.5 120.0