PDB Chemical Component N3E

Ideal Model

Chemical Description

Name 1-[3-(4-CARBOXYPIPERIDIN-1-YL)-3-DEOXY-BETA-D-ARABINOFURANOSYL]PYRIMIDINE-2,4(1H,3H)-DIONE
Synonyms 3-N-PIPERIDINE-4-CARBOXYL-3-DEOXY-ARA-URIDINE
Formula C15 H21 N3 O7
Formal charge 0
Molecular weight 355.343 g/mol
Component type NON-POLYMER

Chemical features

Atom count 46
Chiral atom count 4
Chiral atoms C1' C4' C2' C3'
Bond count 48
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 1-[3-(4-carboxypiperidin-1-yl)-3-deoxy-beta-D-arabinofuranosyl]pyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) 1-[(2S,3S,4S,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]piperidine-4-carboxylic acid

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H]([C@@H](O)[C@@H]1N2CC[C@H](CC2)C(O)=O)N3C=CC(=O)NC3=O
SMILES (CACTVS) OC[CH]1O[CH]([CH](O)[CH]1N2CC[CH](CC2)C(O)=O)N3C=CC(=O)NC3=O
Stereo SMILES (OpenEye) C1CN(CCC1C(=O)O)[C@@H]2[C@H](O[C@H]([C@H]2O)N3C=CC(=O)NC3=O)CO
InChI descriptor InChI=1S/C15H21N3O7/c19-7-9-11(17-4-1-8(2-5-17)14(22)23)12(21)13(25-9)18-6-3-10(20)16-15(18)24/h3,6,8-9,11-13,19,21H,1-2,4-5,7H2,(H,22,23)(H,16,20,24)/t9-,11-,12+,13-/m1/s1
InChIKey descriptor IBEGWFLXVPJKRI-FOUMNBMASA-N

Status Information

Last modified 2021-03-01
Created 2006-03-17
Release status REL
Model PDB code 2G8R
Processing site RCSB