PDB Chemical Component N3E

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N3E

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2 C2 1.256 1.217
C2 N3 1.356 1.346
C2 N1 1.347 1.346
N3 C4 1.358 1.349
N3 HN3 1.000 0.970
C4 O4 1.259 1.218
C4 C5 1.398 1.415
C5 C6 1.397 1.351
C5 H5 1.080 1.080
C6 N1 1.355 1.368
C6 H6 1.079 1.080
N1 C1' 1.471 1.465
C1' O4' 1.432 1.444
C1' C2' 1.535 1.549
C1' H1' 1.100 1.090
O4' C4' 1.439 1.437
C4' C5' 1.530 1.530
C4' C3' 1.533 1.541
C4' H4' 1.100 1.090
C5' O5' 1.434 1.429
C5' H5'1 1.100 1.091
C5' H5'2 1.100 1.090
O5' H5' 0.950 0.966
C2' O2' 1.437 1.429
C2' C3' 1.519 1.552
C2' H2' 1.100 1.090
O2' H1 0.950 0.967
C3' N7 1.470 1.469
C3' H3' 1.099 1.089
N7 C13 1.475 1.466
N7 C8 1.475 1.467
C13 C12 1.528 1.530
C13 H131 1.100 1.090
C13 H132 1.100 1.090
C8 C9 1.520 1.531
C8 H81 1.100 1.090
C8 H82 1.100 1.090
C9 C10 1.529 1.532
C9 H91 1.100 1.090
C9 H92 1.100 1.091
C10 C12 1.520 1.533
C10 C11 1.506 1.507
C10 H10 1.100 1.090
C12 H121 1.100 1.090
C12 H122 1.100 1.089
C11 O13 1.265 1.342
C11 O12 1.240 1.208
O13 H13 0.951 0.967

Bond Angles for N3E

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N3 119.4 119.5
O2 C2 N1 119.5 119.5
N3 C2 N1 121.1 121.0
C2 N3 C4 120.8 120.2
C2 N3 HN3 119.6 119.9
C2 N1 C6 120.3 120.6
C2 N1 C1' 118.6 119.7
C4 N3 HN3 119.6 119.9
N3 C4 O4 119.8 120.3
N3 C4 C5 119.1 119.4
O4 C4 C5 121.1 120.3
C4 C5 C6 118.7 119.1
C4 C5 H5 120.7 120.5
C6 C5 H5 120.6 120.4
C5 C6 N1 120.0 119.7
C5 C6 H6 120.0 120.1
N1 C6 H6 120.0 120.2
C6 N1 C1' 121.1 119.7
N1 C1' O4' 112.5 110.6
N1 C1' C2' 112.1 110.7
N1 C1' H1' 104.9 110.6
O4' C1' C2' 107.5 103.5
O4' C1' H1' 109.8 110.6
C1' O4' C4' 111.0 107.0
C2' C1' H1' 110.2 110.6
C1' C2' O2' 111.3 111.0
C1' C2' C3' 106.0 102.1
C1' C2' H2' 110.5 110.9
O4' C4' C5' 110.8 109.9
O4' C4' C3' 108.3 107.4
O4' C4' H4' 109.7 109.9
C5' C4' C3' 110.2 109.8
C5' C4' H4' 107.7 109.9
C4' C5' O5' 109.5 109.5
C4' C5' H5'1 109.5 109.4
C4' C5' H5'2 109.4 109.5
C3' C4' H4' 110.2 109.9
C4' C3' C2' 104.8 104.0
C4' C3' N7 112.6 110.8
C4' C3' H3' 109.3 110.5
O5' C5' H5'1 109.4 109.5
O5' C5' H5'2 109.5 109.5
C5' O5' H5' 109.5 106.8
H5'1 C5' H5'2 109.5 109.5
O2' C2' C3' 109.0 111.0
O2' C2' H2' 107.5 110.8
C2' O2' H1 109.5 106.8
C3' C2' H2' 112.6 110.8
C2' C3' N7 105.2 110.5
C2' C3' H3' 116.2 110.5
N7 C3' H3' 108.8 110.5
C3' N7 C13 114.4 106.6
C3' N7 C8 117.0 106.7
C13 N7 C8 128.4 107.3
N7 C13 C12 110.4 109.8
N7 C13 H131 108.9 109.5
N7 C13 H132 109.2 109.5
N7 C8 C9 113.3 109.8
N7 C8 H81 107.4 109.4
N7 C8 H82 108.2 109.4
C12 C13 H131 109.0 109.4
C12 C13 H132 109.1 109.4
C13 C12 C10 109.6 109.2
C13 C12 H121 109.4 109.5
C13 C12 H122 109.4 109.5
H131 C13 H132 110.2 109.3
C9 C8 H81 107.4 109.4
C9 C8 H82 108.2 109.4
C8 C9 C10 116.4 109.2
C8 C9 H91 105.6 109.5
C8 C9 H92 107.2 109.5
H81 C8 H82 112.5 109.4
C10 C9 H91 105.6 109.5
C10 C9 H92 107.2 109.5
C9 C10 C12 112.8 108.9
C9 C10 C11 108.9 109.6
C9 C10 H10 109.6 109.6
H91 C9 H92 115.1 109.6
C12 C10 C11 114.9 109.5
C12 C10 H10 102.9 109.6
C10 C12 H121 109.4 109.5
C10 C12 H122 109.4 109.5
C11 C10 H10 107.3 109.6
C10 C11 O13 123.4 120.0
C10 C11 O12 112.3 120.0
H121 C12 H122 109.6 109.6
O13 C11 O12 124.3 120.0
C11 O13 H13 109.5 120.0

Torsion Angles for N3E

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C2 O2 N1 179.3 180.5
O2 C2 N3 C4 180.7 180.0
O2 C2 N3 HN3 0.7 359.7
O2 C2 N1 C6 179.7 180.0
O2 C2 N1 C1' 359.8 0.3
O2 C2 N3 N1 180.7 179.5
N3 C2 N1 C6 0.4 359.5
N3 C2 N1 C1' 180.5 179.7
C4 N3 C2 HN3 180.0 180.3
C2 N3 C4 O4 180.2 179.7
C2 N3 C4 C5 359.6 359.8
O2 C2 N1 N3 179.3 180.5
N1 C2 N3 C4 360.0 0.5
N1 C2 N3 HN3 180.0 180.2
C5 C6 N1 C2 359.7 0.2
C2 N1 C6 H6 179.7 180.2
C6 N1 C2 C1' 179.9 179.8
C2 N1 C1' O4' 193.9 202.4
C2 N1 C1' C2' 72.7 88.3
C2 N1 C1' H1' 313.2 325.3
C4 N3 C2 N1 360.0 0.5
C2 N3 C4 HN3 180.0 179.7
O4 C4 N3 C5 180.7 179.9
N3 C4 C5 C6 0.6 360.0
N3 C4 C5 H5 180.5 180.0
HN3 N3 C2 N1 180.0 180.2
C2 N3 HN3 C4 180.0 180.3
HN3 N3 C4 O4 0.2 359.9
HN3 N3 C4 C5 179.5 180.0
O4 C4 N3 HN3 0.2 359.9
N3 C4 O4 C5 179.3 180.1
O4 C4 C5 C6 179.8 180.1
O4 C4 C5 H5 359.8 0.1
C5 C4 N3 HN3 179.5 180.0
N3 C4 C5 O4 180.7 179.9
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 N1 359.8 0.0
C4 C5 C6 H6 179.8 180.1
C2 N1 C6 C5 359.7 0.2
C4 C5 C6 H5 180.0 180.0
N1 C6 C5 H6 180.0 180.0
C5 C6 N1 C1' 179.6 180.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 N1 179.8 180.0
H5 C5 C6 H6 359.8 0.0
C2 N1 C6 C1' 180.1 180.2
N1 C6 C5 H5 179.8 180.0
C5 C6 N1 H6 180.0 180.0
C6 N1 C1' O4' 14.1 22.7
C6 N1 C1' C2' 252.8 268.5
C6 N1 C1' H1' 133.3 145.6
H6 C6 C5 H5 359.8 0.0
C5 C6 H6 N1 180.0 180.0
H6 C6 N1 C1' 359.6 360.0
C2 N1 C1' C6 179.9 179.8
C1' N1 C6 H6 359.6 360.0
O4' C1' N1 C2' 121.2 114.1
O4' C1' N1 H1' 240.7 237.1
N1 C1' O4' C4' 229.8 201.3
C2' C1' N1 H1' 119.5 123.0
N1 C1' C2' O2' 19.8 37.3
N1 C1' C2' C3' 138.1 155.7
N1 C1' C2' H2' 260.4 273.7
N1 C1' O4' C2' 236.2 241.4
N1 C1' O4' H1' 116.4 122.9
C2' C1' O4' H1' 240.2 241.5
O4' C1' C2' O2' 255.7 278.8
O4' C1' C2' C3' 14.1 37.1
O4' C1' C2' H2' 136.4 155.2
C1' O4' C4' C5' 117.1 146.0
C1' O4' C4' C3' 356.1 26.5
C1' O4' C4' H4' 235.8 267.0
N1 C1' C2' O4' 124.1 118.5
N1 C1' C2' H1' 243.6 237.1
O4' C1' C2' H1' 119.6 118.5
C2' C1' O4' C4' 353.6 319.9
C4' C3' C2' C1' 344.2 339.0
O2' C2' C1' C3' 241.6 241.7
O2' C2' C1' H2' 119.3 123.6
C1' C2' O2' H1 334.1 298.6
C3' C2' C1' H2' 237.7 242.0
C1' C2' C3' N7 103.1 97.9
C1' C2' C3' H3' 223.5 220.4
N1 C1' H1' O4' 238.9 237.1
N1 C1' H1' C2' 120.8 123.0
O4' C1' H1' C2' 241.9 245.9
H1' C1' O4' C4' 113.4 78.4
H1' C1' C2' O2' 136.1 160.3
H1' C1' C2' C3' 254.5 278.6
H1' C1' C2' H2' 16.8 36.7
C4' O4' C1' C2' 353.6 319.9
C4' O4' C1' H1' 113.4 78.4
C5' C4' O4' C3' 121.0 119.5
C5' C4' O4' H4' 241.3 239.0
O4' C4' C5' O5' 18.5 66.7
O4' C4' C5' H5'1 258.5 306.7
O4' C4' C5' H5'2 138.5 186.8
C3' C4' O4' H4' 120.3 119.5
O4' C4' C3' C2' 12.5 358.1
O4' C4' C3' N7 258.7 239.4
O4' C4' C3' H3' 137.6 116.6
O4' C4' C5' C3' 240.2 242.0
O4' C4' C5' H4' 119.9 121.0
C3' C4' C5' H4' 239.7 239.0
C5' C4' C3' C2' 251.2 238.6
C5' C4' C3' N7 137.4 119.9
C5' C4' C3' H3' 16.3 357.1
O5' C5' C4' H5'1 120.0 120.0
O5' C5' C4' H5'2 240.0 239.9
C4' C5' O5' H5' 115.3 180.0
H5'1 C5' C4' H5'2 120.0 120.0
C1' C2' C3' C4' 344.2 339.0
O4' C4' C3' C5' 121.3 119.5
O4' C4' C3' H4' 240.0 240.5
C5' C4' C3' H4' 118.7 121.0
C3' C4' C5' O5' 138.3 184.7
C3' C4' C5' H5'1 18.3 64.7
C3' C4' C5' H5'2 258.3 304.8
O2' C2' C3' C4' 104.0 97.3
C4' C3' C2' H2' 223.2 220.9
C2' C3' C4' N7 113.8 118.7
C2' C3' C4' H3' 234.9 241.4
N7 C3' C4' H3' 121.0 122.8
C4' C3' N7 C13 213.0 294.8
C4' C3' N7 C8 37.0 180.4
O4' C4' H4' C5' 239.4 239.0
O4' C4' H4' C3' 119.1 118.0
C5' C4' H4' C3' 239.7 239.0
H4' C4' C5' O5' 258.6 305.7
H4' C4' C5' H5'1 138.6 185.7
H4' C4' C5' H5'2 18.6 65.7
H4' C4' C3' C2' 132.5 117.6
H4' C4' C3' N7 18.6 358.9
H4' C4' C3' H3' 257.6 236.1
O5' C5' C4' C3' 138.3 184.7
O5' C5' C4' H4' 258.6 305.7
C4' C5' O5' H5'1 240.0 240.1
C4' C5' O5' H5'2 120.0 120.0
H5'1 C5' O5' H5'2 240.0 240.0
H5'1 C5' C4' C3' 18.3 64.7
H5'1 C5' C4' H4' 138.6 185.7
C4' C5' H5'1 O5' 120.0 120.0
C4' C5' H5'1 H5'2 240.0 240.0
O5' C5' H5'1 H5'2 120.0 120.1
H5'1 C5' O5' H5' 235.3 299.9
H5'2 C5' C4' C3' 258.3 304.8
H5'2 C5' C4' H4' 18.6 65.7
C4' C5' H5'2 O5' 240.0 240.0
C4' C5' H5'2 H5'1 120.0 120.0
O5' C5' H5'2 H5'1 240.0 240.0
H5'2 C5' O5' H5' 355.3 60.0
H5' O5' C5' H5'1 235.3 299.9
H5' O5' C5' H5'2 355.3 60.0
O2' C2' C1' H1' 136.1 160.3
C1' C2' O2' C3' 116.5 112.8
C1' C2' O2' H2' 238.9 236.3
C4' C3' C2' O2' 104.0 97.3
C3' C2' O2' H2' 122.4 123.5
O2' C2' C3' N7 222.9 216.2
O2' C2' C3' H3' 343.4 338.7
C3' C2' C1' H1' 254.5 278.6
C1' C2' C3' O2' 240.2 241.7
C1' C2' C3' H2' 120.9 118.1
C2' C3' C4' H4' 132.5 117.6
C4' C3' C2' N7 241.1 241.1
C4' C3' C2' H3' 120.6 118.6
O2' C2' C3' H2' 240.8 236.4
C3' C2' O2' H1 217.6 185.8
N7 C3' C2' H3' 239.6 237.5
C2' C3' N7 C13 99.5 180.1
C2' C3' N7 C8 283.5 65.7
H2' C2' C1' H1' 16.8 36.7
C1' C2' H2' O2' 121.6 123.7
C1' C2' H2' C3' 241.7 247.4
O2' C2' H2' C3' 120.1 123.7
H2' C2' O2' H1 95.2 62.2
H2' C2' C3' N7 342.2 339.7
H2' C2' C3' H3' 102.6 102.3
H1 O2' C2' C3' 217.6 185.8
H1 O2' C2' H2' 95.2 62.2
N7 C3' C4' H4' 18.6 358.9
C4' C3' N7 C2' 113.6 114.7
C4' C3' N7 H3' 238.7 237.2
N7 C3' C2' H2' 342.2 339.7
C2' C3' N7 H3' 125.2 122.5
C13 N7 C3' C8 176.0 114.4
C3' N7 C13 C12 193.1 180.3
C3' N7 C13 H131 73.4 300.4
C3' N7 C13 H132 313.0 60.2
C3' N7 C8 C9 190.4 179.7
C3' N7 C8 H81 72.1 299.7
C3' N7 C8 H82 310.4 59.6
H3' C3' C4' H4' 257.6 236.1
C4' C3' H3' C2' 241.8 245.5
C4' C3' H3' N7 123.3 122.9
H3' C3' C2' H2' 102.6 102.3
C2' C3' H3' N7 241.5 237.5
H3' C3' N7 C13 334.3 57.6
H3' C3' N7 C8 158.3 303.1
C13 N7 C3' H3' 334.3 57.6
C3' N7 C13 C8 184.5 246.0
C13 N7 C8 C9 15.1 65.7
C13 N7 C8 H81 256.7 185.7
C13 N7 C8 H82 135.1 305.6
C12 C13 N7 H131 119.6 239.9
C12 C13 N7 H132 240.0 120.1
N7 C13 C12 C10 313.7 61.4
N7 C13 C12 H121 193.8 181.3
N7 C13 C12 H122 73.7 301.5
H131 C13 N7 H132 120.4 240.2
C8 N7 C3' H3' 158.3 303.1
C3' N7 C8 C13 175.4 114.0
C8 N7 C13 C12 8.5 294.3
C8 N7 C13 H131 248.9 54.4
C8 N7 C13 H132 128.5 174.2
C9 C8 N7 H81 118.3 239.9
C9 C8 N7 H82 240.0 120.1
N7 C8 C9 C10 1.0 298.6
N7 C8 C9 H91 244.2 178.7
N7 C8 C9 H92 121.0 58.5
H81 C8 N7 H82 121.7 240.1
C12 C13 N7 C8 8.5 294.3
N7 C13 C12 H131 240.4 120.1
N7 C13 C12 H132 120.0 239.9
H131 C13 C12 H132 239.6 119.7
C9 C10 C12 C13 63.1 304.4
C13 C12 C10 C11 188.8 184.5
C13 C12 C10 H10 305.0 64.3
C10 C12 C13 H121 120.0 240.1
C10 C12 C13 H122 240.0 119.9
H121 C12 C13 H122 120.0 239.8
H131 C13 N7 C8 248.9 54.4
N7 C13 H131 C12 120.5 239.7
N7 C13 H131 H132 240.3 119.9
C12 C13 H131 H132 119.7 240.2
H131 C13 C12 C10 73.3 301.3
H131 C13 C12 H121 313.4 61.2
H131 C13 C12 H122 193.3 181.4
H132 C13 N7 C8 128.5 174.2
N7 C13 H132 C12 239.2 120.3
N7 C13 H132 H131 119.6 240.1
C12 C13 H132 H131 240.4 119.8
H132 C13 C12 C10 193.7 181.5
H132 C13 C12 H121 73.8 301.4
H132 C13 C12 H122 313.7 61.6
N7 C8 C9 H81 241.6 120.1
N7 C8 C9 H82 120.0 239.9
H81 C8 C9 H82 238.4 119.8
C10 C9 C8 H91 116.8 119.9
C10 C9 C8 H92 240.0 240.1
C8 C9 C10 C12 320.9 55.6
C8 C9 C10 C11 192.0 175.5
C8 C9 C10 H10 74.9 295.8
H91 C9 C8 H92 123.2 120.2
N7 C8 H81 C9 122.1 239.7
N7 C8 H81 H82 241.0 119.9
C9 C8 H81 H82 118.9 240.2
H81 C8 C9 C10 119.3 178.5
H81 C8 C9 H91 2.5 58.6
H81 C8 C9 H92 239.3 298.4
N7 C8 H82 C9 236.9 120.3
N7 C8 H82 H81 118.5 240.1
C9 C8 H82 H81 241.6 119.8
H82 C8 C9 C10 241.0 58.7
H82 C8 C9 H91 124.2 298.8
H82 C8 C9 H92 1.0 178.6
C13 C12 C10 C9 63.1 304.4
C10 C9 C8 H81 119.3 178.5
C10 C9 C8 H82 241.0 58.7
C8 C9 C10 H91 243.2 240.1
C8 C9 C10 H92 120.0 119.9
H91 C9 C10 H92 236.8 239.8
C12 C10 C9 C11 128.8 240.2
C12 C10 C9 H10 246.0 119.8
C9 C10 C12 H121 183.1 184.5
C9 C10 C12 H122 303.1 64.3
C11 C10 C9 H10 117.1 239.7
C9 C10 C11 O13 122.6 60.5
C9 C10 C11 O12 300.9 240.5
H91 C9 C8 H81 2.5 58.6
H91 C9 C8 H82 124.2 298.8
C8 C9 H91 C10 123.9 119.7
C8 C9 H91 H92 242.0 239.9
C10 C9 H91 H92 118.1 120.2
H91 C9 C10 C12 77.7 175.5
H91 C9 C10 C11 308.8 295.4
H91 C9 C10 H10 191.7 55.7
H92 C9 C8 H81 239.3 298.4
H92 C9 C8 H82 1.0 178.6
C8 C9 H92 C10 234.3 240.3
C8 C9 H92 H91 117.1 120.1
C10 C9 H92 H91 242.8 239.8
H92 C9 C10 C12 200.9 295.7
H92 C9 C10 C11 72.1 55.6
H92 C9 C10 H10 314.9 175.9
C10 C12 C13 H131 73.3 301.3
C10 C12 C13 H132 193.7 181.5
C13 C12 C10 H121 240.0 119.9
C13 C12 C10 H122 120.0 240.1
C12 C10 C9 H91 77.7 175.5
C12 C10 C9 H92 200.9 295.7
C9 C10 C12 C11 234.3 119.9
C9 C10 C12 H10 118.1 240.1
C11 C10 C12 H10 243.7 120.2
C12 C10 C11 O13 354.9 180.0
C12 C10 C11 O12 173.2 360.0
H121 C12 C10 H122 239.9 120.2
C11 C10 C9 H91 308.8 295.4
C11 C10 C9 H92 72.1 55.6
C9 C10 C11 C12 127.7 240.5
C9 C10 C11 H10 241.4 120.3
C12 C10 C11 H10 113.7 239.8
C11 C10 C12 H121 308.7 64.6
C11 C10 C12 H122 68.8 304.4
O13 C11 C10 O12 181.7 180.0
C10 C11 O13 H13 178.1 180.0
H10 C10 C9 H91 191.7 55.7
H10 C10 C9 H92 314.9 175.9
C9 C10 H10 C12 239.7 119.5
C9 C10 H10 C11 118.1 239.7
C12 C10 H10 C11 238.4 120.2
H10 C10 C12 H121 65.0 304.4
H10 C10 C12 H122 185.0 184.1
H10 C10 C11 O13 241.2 300.2
H10 C10 C11 O12 59.5 120.2
H121 C12 C13 H131 313.4 61.2
H121 C12 C13 H132 73.8 301.4
C13 C12 H121 C10 120.1 240.3
C13 C12 H121 H122 240.1 120.2
H121 C12 C10 C11 308.7 64.6
H121 C12 C10 H10 65.0 304.4
C10 C12 H121 H122 120.0 239.8
H122 C12 C13 H131 193.3 181.4
H122 C12 C13 H132 313.7 61.6
C13 C12 H122 C10 239.9 119.7
C13 C12 H122 H121 119.9 239.9
H122 C12 C10 C11 68.8 304.4
H122 C12 C10 H10 185.0 184.1
C10 C12 H122 H121 240.0 120.2
O13 C11 C10 H10 241.2 300.2
C10 C11 O13 O12 178.1 180.0
O12 C11 C10 H10 59.5 120.2
C10 C11 O12 O13 181.7 180.0
O12 C11 O13 H13 360.0 360.0
H13 O13 C11 O12 360.0 360.0