PDB Chemical Component N3B

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N3B

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.391	1.387
C1	C6	1.395	1.379
C1	HA1	1.080	1.080
C2	C3	1.391	1.386
C2	F7	1.330	1.350
C3	C4	1.391	1.379
C3	HA2	1.081	1.079
C4	C5	1.388	1.395
C4	HB1	1.079	1.080
C5	C6	1.389	1.394
C5	C8	1.448	1.482
C6	HB2	1.080	1.080
C8	C9	1.386	1.395
C8	C13	1.389	1.395
C9	C10	1.394	1.377
C9	HC1	1.080	1.080
C10	C11	1.391	1.397
C10	HD1	1.082	1.080
C11	C12	1.388	1.397
C11	C14	1.448	1.478
C12	C13	1.404	1.376
C12	HD2	1.079	1.080
C13	HC2	1.081	1.080
C14	O15	1.226	1.216
C14	N16	1.345	1.348
N16	S17	1.775	1.656
N16	H47	1.008	0.970
S17	C18	1.732	1.763
S17	O24	1.433	1.421
S17	O25	1.435	1.421
C18	C19	1.394	1.382
C18	C23	1.387	1.383
C19	C20	1.392	1.382
C19	HG	1.081	1.080
C20	C21	1.393	1.389
C20	N26	1.368	1.479
C21	C22	1.392	1.389
C21	N29	1.399	1.398
C22	C23	1.401	1.382
C22	HF	1.078	1.080
C23	HE	1.081	1.080
N26	O27	1.229	1.218
N26	O28	1.211	1.218
N29	C30	1.454	1.465
N29	H51	1.027	0.969
C30	C31	1.541	1.530
C30	HH1	1.099	1.090
C30	HH2	1.104	1.091
C31	S32	1.817	1.814
C31	HI1	1.100	1.090
C31	HI2	1.092	1.090
S32	C33	1.728	1.762
C33	C34	1.391	1.389
C33	C38	1.390	1.390
C34	C35	1.389	1.381
C34	HJ1	1.079	1.080
C35	C36	1.390	1.383
C35	HK1	1.079	1.080
C36	C37	1.390	1.382
C36	HL	1.080	1.080
C37	C38	1.389	1.380
C37	HK2	1.080	1.080
C38	HJ2	1.081	1.080

Bond Angles for N3B

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	120.0	120.1
C2	C1	HA1	119.5	119.9
C1	C2	C3	119.7	120.2
C1	C2	F7	120.1	119.9
C6	C1	HA1	120.5	120.0
C1	C6	C5	120.4	119.9
C1	C6	HB2	117.9	120.0
C3	C2	F7	120.2	119.9
C2	C3	C4	119.9	120.1
C2	C3	HA2	119.8	119.9
C4	C3	HA2	120.2	119.9
C3	C4	C5	120.7	119.9
C3	C4	HB1	117.8	120.1
C5	C4	HB1	121.4	120.0
C4	C5	C6	119.2	119.8
C4	C5	C8	120.2	120.1
C6	C5	C8	120.6	120.1
C5	C6	HB2	121.6	120.1
C5	C8	C9	119.8	120.0
C5	C8	C13	121.0	120.0
C9	C8	C13	119.2	120.1
C8	C9	C10	120.6	120.0
C8	C9	HC1	121.2	120.0
C8	C13	C12	120.4	120.0
C8	C13	HC2	121.2	120.0
C10	C9	HC1	118.2	119.9
C9	C10	C11	120.3	119.9
C9	C10	HD1	119.0	120.0
C11	C10	HD1	120.7	120.0
C10	C11	C12	119.3	120.0
C10	C11	C14	118.8	120.0
C12	C11	C14	121.9	120.0
C11	C12	C13	120.1	120.0
C11	C12	HD2	121.3	120.0
C11	C14	O15	119.1	120.0
C11	C14	N16	122.7	120.0
C13	C12	HD2	118.5	120.0
C12	C13	HC2	118.4	120.0
O15	C14	N16	118.2	120.0
C14	N16	S17	119.6	120.0
C14	N16	H47	121.3	120.0
S17	N16	H47	119.1	120.0
N16	S17	C18	111.3	107.4
N16	S17	O24	109.9	105.7
N16	S17	O25	109.4	105.8
C18	S17	O24	107.6	105.8
C18	S17	O25	109.4	105.8
S17	C18	C19	120.1	119.9
S17	C18	C23	120.5	119.9
O24	S17	O25	109.3	125.4
C19	C18	C23	119.5	120.2
C18	C19	C20	120.4	120.1
C18	C19	HG	117.6	120.0
C18	C23	C22	120.1	120.0
C18	C23	HE	119.3	120.0
C20	C19	HG	122.0	119.9
C19	C20	C21	120.3	119.8
C19	C20	N26	118.0	120.1
C21	C20	N26	121.7	120.1
C20	C21	C22	119.3	119.9
C20	C21	N29	123.1	120.0
C20	N26	O27	120.3	120.0
C20	N26	O28	123.9	120.0
C22	C21	N29	117.7	120.1
C21	C22	C23	120.4	119.9
C21	C22	HF	123.5	120.1
C21	N29	C30	126.6	120.0
C21	N29	H51	115.6	120.0
C23	C22	HF	116.1	120.0
C22	C23	HE	120.6	119.9
O27	N26	O28	115.8	120.0
C30	N29	H51	117.8	120.0
N29	C30	C31	110.8	109.4
N29	C30	HH1	109.7	109.5
N29	C30	HH2	111.4	109.4
C31	C30	HH1	106.7	109.5
C31	C30	HH2	108.8	109.5
C30	C31	S32	111.3	109.4
C30	C31	HI1	107.4	109.5
C30	C31	HI2	110.3	109.4
HH1	C30	HH2	109.4	109.5
S32	C31	HI1	107.3	109.5
S32	C31	HI2	110.0	109.5
C31	S32	C33	120.3	100.0
HI1	C31	HI2	110.4	109.5
S32	C33	C34	119.7	120.1
S32	C33	C38	120.3	120.1
C34	C33	C38	120.1	119.8
C33	C34	C35	120.0	119.9
C33	C34	HJ1	120.0	120.0
C33	C38	C37	119.9	119.9
C33	C38	HJ2	120.5	120.0
C35	C34	HJ1	120.0	120.0
C34	C35	C36	120.0	120.1
C34	C35	HK1	120.1	119.9
C36	C35	HK1	120.0	120.0
C35	C36	C37	120.0	120.2
C35	C36	HL	120.0	119.9
C37	C36	HL	120.0	120.0
C36	C37	C38	120.0	120.1
C36	C37	HK2	119.9	120.0
C38	C37	HK2	120.1	119.9
C37	C38	HJ2	119.6	120.1

Torsion Angles for N3B

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	HA1	180.0	179.7
C2	C1	C6	C5	0.0	0.5
C2	C1	C6	HB2	180.0	180.0
C3	C2	C1	F7	180.0	180.0
C1	C2	C3	C4	359.9	360.0
C1	C2	C3	HA2	180.0	180.0
C2	C1	C6	HA1	180.0	180.3
C6	C1	C2	C3	0.0	359.7
C6	C1	C2	F7	180.1	179.7
C4	C5	C6	C1	359.9	359.5
C1	C6	C5	C8	180.3	179.7
C5	C6	C1	HB2	180.0	180.5
C2	C1	HA1	C6	180.0	179.7
HA1	C1	C2	C3	180.0	180.0
HA1	C1	C2	F7	0.1	360.0
HA1	C1	C6	C5	180.0	180.3
HA1	C1	C6	HB2	0.0	359.8
C3	C2	C1	C6	0.0	359.7
C3	C2	C1	HA1	180.0	180.0
C1	C2	C3	F7	180.0	180.0
C4	C3	C2	HA2	179.9	180.0
C2	C3	C4	C5	0.1	0.1
C2	C3	C4	HB1	180.1	180.0
F7	C2	C1	C6	180.1	179.7
F7	C2	C1	HA1	0.1	360.0
C1	C2	F7	C3	180.0	180.0
F7	C2	C3	C4	179.9	180.0
F7	C2	C3	HA2	359.9	0.0
C4	C3	C2	F7	179.9	180.0
C2	C3	C4	HA2	180.1	180.0
C5	C4	C3	HB1	180.0	180.1
C3	C4	C5	C6	0.0	0.2
C3	C4	C5	C8	179.6	180.0
HA2	C3	C2	F7	359.9	0.0
C2	C3	HA2	C4	179.9	180.0
HA2	C3	C4	C5	180.0	180.0
HA2	C3	C4	HB1	0.0	360.0
C1	C6	C5	C4	359.9	359.5
C5	C4	C3	HA2	180.0	180.0
C3	C4	C5	HB1	180.0	179.9
C6	C5	C4	C8	180.4	180.2
C4	C5	C6	HB2	180.0	180.0
C4	C5	C8	C9	300.5	140.2
C4	C5	C8	C13	120.5	320.3
HB1	C4	C3	HA2	0.0	360.0
C3	C4	HB1	C5	180.0	180.1
HB1	C4	C5	C6	180.0	180.3
HB1	C4	C5	C8	359.6	0.1
C5	C6	C1	HA1	180.0	180.3
C1	C6	C5	HB2	180.0	179.5
C6	C5	C4	HB1	180.0	180.3
C4	C5	C6	C8	179.6	179.8
C6	C5	C8	C9	120.1	320.0
C6	C5	C8	C13	300.1	140.0
C8	C5	C4	HB1	359.6	0.1
C4	C5	C8	C6	180.4	180.2
C8	C5	C6	HB2	0.4	0.2
C9	C8	C5	C13	180.0	180.0
C5	C8	C9	C10	180.0	180.0
C5	C8	C9	HC1	360.0	360.0
C5	C8	C13	C12	180.1	179.7
C5	C8	C13	HC2	0.0	360.0
HB2	C6	C1	HA1	0.0	359.8
C1	C6	HB2	C5	180.0	180.5
HB2	C6	C5	C8	0.4	0.2
C5	C8	C9	C13	180.0	180.0
C9	C8	C13	C12	0.1	359.8
C9	C8	C13	HC2	180.0	180.0
C10	C9	C8	HC1	180.0	180.0
C8	C9	C10	C11	360.0	0.0
C8	C9	C10	HD1	180.1	180.1
C5	C8	C13	C9	180.0	180.0
C13	C8	C9	C10	360.0	359.9
C13	C8	C9	HC1	180.0	180.0
C11	C12	C13	C8	359.9	0.6
C8	C13	C12	HD2	180.0	180.0
C12	C13	C8	HC2	180.0	179.8
C10	C9	C8	C13	360.0	359.9
C8	C9	C10	HC1	180.0	180.0
C11	C10	C9	HD1	179.9	179.9
C9	C10	C11	C12	0.0	0.3
C9	C10	C11	C14	180.1	180.0
HC1	C9	C8	C13	180.0	180.0
C8	C9	HC1	C10	180.0	180.0
HC1	C9	C10	C11	180.0	180.0
HC1	C9	C10	HD1	0.1	0.1
C11	C10	C9	HC1	180.0	180.0
C9	C10	C11	HD1	180.1	180.1
C12	C11	C10	C14	179.9	180.3
C10	C11	C12	C13	0.1	359.4
C10	C11	C12	HD2	179.9	180.0
C10	C11	C14	O15	10.1	0.1
C10	C11	C14	N16	190.1	180.0
HD1	C10	C9	HC1	0.1	0.1
C9	C10	HD1	C11	179.9	179.9
HD1	C10	C11	C12	179.9	180.2
HD1	C10	C11	C14	360.0	359.9
C8	C13	C12	C11	359.9	0.6
C12	C11	C10	HD1	179.9	180.2
C10	C11	C12	C14	180.1	179.7
C12	C11	C14	O15	190.2	179.8
C12	C11	C14	N16	10.2	359.7
C13	C12	C11	HD2	180.1	179.4
C11	C12	C13	HC2	179.9	180.3
C14	C11	C10	HD1	360.0	359.9
C10	C11	C14	C12	179.9	180.3
C14	C11	C12	C13	179.9	179.7
C14	C11	C12	HD2	359.8	0.3
O15	C14	C11	N16	180.0	180.1
C11	C14	N16	S17	180.0	180.0
C11	C14	N16	H47	360.0	0.0
C8	C13	C12	HC2	180.0	180.2
C13	C12	C11	C14	179.9	179.7
C11	C12	C13	HD2	179.9	180.6
HD2	C12	C11	C14	359.8	0.3
C11	C12	HD2	C13	180.1	179.4
HD2	C12	C13	HC2	0.0	359.8
C8	C13	HC2	C12	180.0	179.8
HC2	C13	C12	HD2	0.0	359.8
C11	C14	O15	N16	180.0	179.9
O15	C14	N16	S17	0.0	360.0
O15	C14	N16	H47	180.0	179.9
C11	C14	N16	O15	180.0	180.1
S17	N16	C14	H47	180.1	180.0
C14	N16	S17	C18	69.5	65.0
C14	N16	S17	O24	310.5	312.4
C14	N16	S17	O25	190.5	177.6
C14	N16	S17	H47	179.9	180.0
C18	S17	N16	O24	119.1	112.6
C18	S17	N16	O25	239.0	247.4
N16	S17	C18	C19	67.1	90.0
N16	S17	C18	C23	247.0	270.0
O24	S17	N16	O25	120.0	134.8
C14	N16	H47	S17	180.1	180.0
H47	N16	S17	C18	249.6	245.0
H47	N16	S17	O24	130.5	132.4
H47	N16	S17	O25	10.5	357.6
C18	S17	N16	H47	249.6	245.0
N16	S17	C18	O24	239.6	247.4
N16	S17	C18	O25	121.0	112.6
O24	S17	C18	O25	241.4	225.2
C19	C18	S17	C23	180.1	180.1
S17	C18	C19	C20	180.0	179.9
S17	C18	C19	HG	359.9	0.0
S17	C18	C23	C22	180.0	180.1
S17	C18	C23	HE	0.1	0.1
O24	S17	N16	H47	130.5	132.4
N16	S17	O24	C18	121.3	113.7
N16	S17	O24	O25	240.0	236.9
C18	S17	O24	O25	118.7	123.2
O24	S17	C18	C19	187.6	202.6
O24	S17	C18	C23	7.5	22.5
O25	S17	N16	H47	10.5	357.6
N16	S17	O25	C18	237.9	246.3
N16	S17	O25	O24	120.3	123.1
C18	S17	O25	O24	242.4	236.8
O25	S17	C18	C19	306.2	337.4
O25	S17	C18	C23	126.1	157.4
C19	C18	S17	O24	187.6	202.6
C19	C18	S17	O25	306.2	337.4
S17	C18	C19	C23	179.9	179.9
C19	C18	C23	C22	359.9	360.0
C19	C18	C23	HE	180.0	180.0
C20	C19	C18	HG	180.0	179.9
C18	C19	C20	C21	360.0	0.3
C18	C19	C20	N26	179.9	179.9
C23	C18	S17	O24	7.5	22.5
C23	C18	S17	O25	126.1	157.4
S17	C18	C23	C19	180.1	180.1
C23	C18	C19	C20	0.1	360.0
C23	C18	C19	HG	180.0	180.1
C21	C22	C23	C18	0.0	359.7
C18	C23	C22	HF	180.0	180.0
C22	C23	C18	HE	179.9	180.0
C20	C19	C18	C23	0.1	360.0
C18	C19	C20	HG	180.0	180.1
C21	C20	C19	N26	180.0	180.3
C19	C20	C21	C22	360.0	359.5
C19	C20	C21	N29	179.9	180.0
C19	C20	N26	O27	360.0	322.3
C19	C20	N26	O28	180.0	142.5
HG	C19	C18	C23	180.0	180.1
C18	C19	HG	C20	180.0	179.9
HG	C19	C20	C21	180.0	180.2
HG	C19	C20	N26	360.0	359.9
C21	C20	C19	HG	180.0	180.2
C19	C20	C21	N26	180.0	179.7
C21	C20	N26	O27	179.9	142.0
C21	C20	N26	O28	0.0	322.2
C22	C21	C20	N29	180.0	179.5
C20	C21	C22	C23	0.0	0.5
C20	C21	C22	HF	180.0	180.3
C20	C21	N29	C30	179.8	173.6
C20	C21	N29	H51	0.0	353.6
N26	C20	C19	HG	360.0	359.9
C19	C20	N26	C21	180.0	180.3
N26	C20	C21	C22	180.0	179.8
N26	C20	C21	N29	360.0	0.3
O27	N26	C20	O28	179.9	179.8
C18	C23	C22	C21	0.0	359.7
C22	C21	C20	N26	180.0	179.8
C20	C21	C22	N29	180.0	180.5
C22	C21	N29	C30	359.8	354.1
C22	C21	N29	H51	180.0	174.1
C23	C22	C21	HF	180.0	180.2
C21	C22	C23	HE	180.0	179.8
N29	C21	C20	N26	360.0	0.3
C20	C21	N29	C22	180.0	179.5
N29	C21	C22	C23	180.1	180.0
N29	C21	C22	HF	0.1	359.8
C30	N29	C21	H51	179.8	180.0
C21	N29	C30	C31	77.9	180.0
C21	N29	C30	HH1	320.3	300.0
C21	N29	C30	HH2	199.1	60.0
C18	C23	C22	HE	180.1	180.0
C23	C22	C21	N29	180.1	180.0
C21	C22	C23	HF	180.0	179.8
HF	C22	C21	N29	0.1	359.8
C21	C22	HF	C23	180.0	180.2
HF	C22	C23	HE	360.0	360.0
C18	C23	HE	C22	179.9	180.0
HE	C23	C22	HF	360.0	360.0
C20	N26	O27	O28	180.1	180.2
C20	N26	O28	O27	179.9	179.8
C21	N29	C30	H51	180.2	180.0
C31	C30	N29	HH1	117.5	240.0
C31	C30	N29	HH2	238.7	120.0
N29	C30	C31	S32	42.7	180.0
N29	C30	C31	HI1	285.5	300.0
N29	C30	C31	HI2	165.1	60.0
HH1	C30	N29	HH2	121.2	240.0
C21	N29	H51	C30	179.8	180.0
H51	N29	C30	C31	257.7	360.0
H51	N29	C30	HH1	140.1	120.0
H51	N29	C30	HH2	18.9	240.0
C31	C30	N29	H51	257.7	360.0
N29	C30	C31	HH1	240.7	120.0
N29	C30	C31	HH2	122.7	240.1
HH1	C30	C31	HH2	242.1	120.0
S32	C31	C30	HI1	117.2	240.0
S32	C31	C30	HI2	237.6	120.0
C30	C31	S32	C33	280.2	180.0
HI1	C31	C30	HI2	120.4	240.0
HH1	C30	N29	H51	140.1	120.0
N29	C30	HH1	C31	120.0	240.0
N29	C30	HH1	HH2	237.6	120.0
C31	C30	HH1	HH2	117.6	240.0
HH1	C30	C31	S32	162.0	60.0
HH1	C30	C31	HI1	44.8	180.0
HH1	C30	C31	HI2	284.4	300.0
HH2	C30	N29	H51	18.9	240.0
N29	C30	HH2	C31	237.6	119.9
N29	C30	HH2	HH1	121.4	240.0
C31	C30	HH2	HH1	243.8	120.0
HH2	C30	C31	S32	279.9	299.9
HH2	C30	C31	HI1	162.7	60.0
HH2	C30	C31	HI2	42.4	180.0
S32	C31	C30	HH1	162.0	60.0
S32	C31	C30	HH2	279.9	299.9
C30	C31	S32	HI1	242.8	120.0
C30	C31	S32	HI2	122.6	240.1
HI1	C31	S32	HI2	239.8	120.1
C31	S32	C33	C34	106.0	180.0
C31	S32	C33	C38	286.2	359.7
HI1	C31	C30	HH1	44.8	180.0
HI1	C31	C30	HH2	162.7	60.0
C30	C31	HI1	S32	119.8	240.0
C30	C31	HI1	HI2	239.7	120.0
S32	C31	HI1	HI2	119.9	239.9
HI1	C31	S32	C33	37.5	60.0
HI2	C31	C30	HH1	284.4	300.0
HI2	C31	C30	HH2	42.4	180.0
C30	C31	HI2	S32	236.8	119.9
C30	C31	HI2	HI1	118.5	240.0
S32	C31	HI2	HI1	241.7	120.1
HI2	C31	S32	C33	157.7	300.0
C33	S32	C31	HI1	37.5	60.0
C33	S32	C31	HI2	157.7	300.0
C34	C33	S32	C38	179.9	180.3
S32	C33	C34	C35	180.2	180.0
S32	C33	C34	HJ1	0.1	360.0
S32	C33	C38	C37	179.8	179.7
S32	C33	C38	HJ2	359.8	0.3
S32	C33	C34	C38	180.1	179.7
C34	C33	C38	C37	359.9	359.4
C34	C33	C38	HJ2	179.9	180.0
C35	C34	C33	HJ1	180.1	180.0
C33	C34	C35	C36	359.9	359.9
C33	C34	C35	HK1	180.0	180.0
S32	C33	C38	C34	179.9	180.3
C38	C33	C34	C35	0.1	0.3
C38	C33	C34	HJ1	180.0	180.3
C36	C37	C38	C33	0.1	0.6
C33	C38	C37	HK2	180.0	180.3
C37	C38	C33	HJ2	180.0	179.4
C35	C34	C33	C38	0.1	0.3
C33	C34	C35	HJ1	179.9	180.0
C36	C35	C34	HK1	179.9	179.9
C34	C35	C36	C37	0.1	0.1
C34	C35	C36	HL	180.1	180.0
HJ1	C34	C33	C38	180.0	180.3
C33	C34	HJ1	C35	180.1	180.0
HJ1	C34	C35	C36	180.0	180.0
HJ1	C34	C35	HK1	0.1	0.1
C36	C35	C34	HJ1	180.0	180.0
C34	C35	C36	HK1	180.1	180.1
C37	C36	C35	HL	180.0	180.1
C35	C36	C37	C38	359.9	359.6
C35	C36	C37	HK2	180.0	180.0
HK1	C35	C34	HJ1	0.1	0.1
C34	C35	HK1	C36	179.9	179.9
HK1	C35	C36	C37	180.0	180.0
HK1	C35	C36	HL	0.0	359.9
C33	C38	C37	C36	0.1	0.6
C37	C36	C35	HK1	180.0	180.0
C35	C36	C37	HL	180.0	179.9
C38	C37	C36	HK2	179.9	179.7
C36	C37	C38	HJ2	180.1	180.1
HL	C36	C35	HK1	0.0	359.9
C35	C36	HL	C37	180.0	180.1
HL	C36	C37	C38	179.9	179.7
HL	C36	C37	HK2	360.0	0.1
C33	C38	C37	HJ2	180.0	180.6
C38	C37	C36	HL	179.9	179.7
C36	C37	C38	HK2	180.1	180.3
HK2	C37	C36	HL	360.0	0.1
C36	C37	HK2	C38	179.9	179.7
HK2	C37	C38	HJ2	360.0	359.7
C33	C38	HJ2	C37	180.0	179.4
HJ2	C38	C37	HK2	360.0	359.7