PDB Chemical Component N1T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N1T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1' C2' 1.439 1.380
C1' C6' 1.456 1.389
C1' H1' 1.103 1.080
C2' CM2 1.465 1.506
C2' N3' 1.334 1.320
CM2 HM21 1.115 1.090
CM2 HM22 1.115 1.090
CM2 HM23 1.115 1.091
N3' C4' 1.361 1.324
C4' N4' 1.287 1.390
C4' C5' 1.432 1.390
N4' HN41 1.019 0.970
N4' HN42 1.020 0.970
C5' C6' 1.353 1.384
C5' C7' 1.523 1.507
C6' H6' 1.103 1.079
C7' N3 1.510 1.465
C7' H7'1 1.114 1.090
C7' H7'2 1.115 1.090
N3 C2 1.332 1.313
N3 C4 1.344 1.316
C2 S1 1.669 1.737
C2 H2 1.103 1.080
S1 C5 1.704 1.787
C5 C4 1.377 1.357
C5 C6 1.508 1.507
C4 CM4 1.506 1.507
CM4 HM41 1.116 1.090
CM4 HM42 1.115 1.090
CM4 HM43 1.116 1.089
C6 C7 1.500 1.530
C6 H61 1.115 1.090
C6 H62 1.115 1.090
C7 O7 1.416 1.428
C7 H71 1.114 1.090
C7 H72 1.115 1.090
O7 PA 1.574 1.610
PA O1A 1.500 1.610
PA O2A 1.500 1.481
PA O3A 1.584 1.609
O2A HOA2 0.951  
O3A PB 1.566 1.610
PB O1B 1.461 1.610
PB O2B 1.494 1.545
PB O3B 1.463 1.545
O3B HOB3 0.950  

Bond Angles for N1T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' C1' C6' 117.6 119.4
C2' C1' H1' 120.6 120.3
C1' C2' CM2 118.8 119.6
C1' C2' N3' 119.3 120.8
C6' C1' H1' 121.8 120.3
C1' C6' C5' 120.9 118.5
C1' C6' H6' 123.2 120.8
CM2 C2' N3' 120.9 119.5
C2' CM2 HM21 118.9 109.5
C2' CM2 HM22 108.9 109.5
C2' CM2 HM23 108.9 109.5
C2' N3' C4' 120.4 121.6
HM21 CM2 HM22 108.8 109.5
HM21 CM2 HM23 108.8 109.5
HM22 CM2 HM23 101.2 109.4
N3' C4' N4' 114.2 119.7
N3' C4' C5' 123.0 120.6
N4' C4' C5' 122.3 119.7
C4' N4' HN41 114.1 120.0
C4' N4' HN42 110.4 120.0
C4' C5' C6' 116.7 119.1
C4' C5' C7' 122.9 120.5
HN41 N4' HN42 110.6 120.0
C6' C5' C7' 118.6 120.4
C5' C6' H6' 115.9 120.8
C5' C7' N3 116.3 109.5
C5' C7' H7'1 109.7 109.5
C5' C7' H7'2 109.7 109.4
N3 C7' H7'1 109.8 109.5
N3 C7' H7'2 109.8 109.5
C7' N3 C2 122.4 119.3
C7' N3 C4 122.4 119.2
H7'1 C7' H7'2 100.5 109.5
C2 N3 C4 114.1 121.5
N3 C2 S1 112.4 102.1
N3 C2 H2 114.3 128.9
N3 C4 C5 111.1 118.4
N3 C4 CM4 119.4 120.8
S1 C2 H2 133.3 128.9
C2 S1 C5 90.5 97.4
S1 C5 C4 110.6 100.6
S1 C5 C6 120.0 129.7
C4 C5 C6 127.4 129.7
C5 C4 CM4 125.1 120.8
C5 C6 C7 116.5 109.4
C5 C6 H61 109.7 109.5
C5 C6 H62 109.7 109.4
C4 CM4 HM41 119.4 109.5
C4 CM4 HM42 108.7 109.4
C4 CM4 HM43 108.7 109.5
HM41 CM4 HM42 108.7 109.4
HM41 CM4 HM43 108.6 109.5
HM42 CM4 HM43 101.4 109.5
C7 C6 H61 109.7 109.5
C7 C6 H62 109.7 109.4
C6 C7 O7 99.6 109.5
C6 C7 H71 116.0 109.5
C6 C7 H72 116.0 109.5
H61 C6 H62 100.4 109.5
O7 C7 H71 116.0 109.5
O7 C7 H72 116.0 109.4
C7 O7 PA 130.5 106.8
H71 C7 H72 94.4 109.5
O7 PA O1A 103.0 109.5
O7 PA O2A 117.1 109.4
O7 PA O3A 108.9 109.5
O1A PA O2A 116.8 109.5
O1A PA O3A 106.8 109.5
O2A PA O3A 103.8 109.5
PA O2A HOA2 117.1  
PA O3A PB 137.5 106.8
O3A PB O1B 95.2 109.5
O3A PB O2B 100.8 109.5
O3A PB O3B 105.8 109.4
O1B PB O2B 125.0 109.5
O1B PB O3B 115.0 109.4
O2B PB O3B 110.4 109.5
PB O3B HOB3 105.8  

Torsion Angles for N1T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6' C1' C2' H1' 180.0 180.0
C2' C1' C6' C5' 359.5 0.0
C2' C1' C6' H6' 179.5 179.9
CM2 C2' C1' N3' 191.2 179.7
C1' C2' CM2 HM21 180.0 90.0
C1' C2' CM2 HM22 305.3 210.0
C1' C2' CM2 HM23 54.7 330.0
C1' C2' N3' C4' 16.6 359.4
C2' C1' C6' H1' 180.0 180.0
C6' C1' C2' CM2 179.0 180.0
C6' C1' C2' N3' 347.7 0.3
C4' C5' C6' C1' 8.2 359.9
C1' C6' C5' C7' 173.4 180.0
C5' C6' C1' H6' 180.0 180.1
C2' C1' H1' C6' 180.0 180.0
H1' C1' C2' CM2 359.0 360.0
H1' C1' C2' N3' 167.7 180.2
H1' C1' C6' C5' 179.5 180.1
H1' C1' C6' H6' 359.5 359.9
CM2 C2' C1' C6' 179.0 180.0
CM2 C2' C1' H1' 359.0 360.0
C1' C2' CM2 N3' 168.6 180.3
CM2 C2' N3' C4' 185.1 179.7
HM21 CM2 C2' HM22 234.8 239.9
HM21 CM2 C2' HM23 125.3 120.0
HM22 CM2 C2' HM23 250.5 240.1
N3' C2' C1' C6' 347.7 0.3
N3' C2' C1' H1' 167.7 180.2
C1' C2' N3' CM2 191.5 179.7
N3' C2' CM2 HM21 11.5 269.7
N3' C2' CM2 HM22 136.7 29.8
N3' C2' CM2 HM23 246.2 149.7
C2' N3' C4' N4' 179.9 180.3
C2' N3' C4' C5' 351.4 0.5
HM21 CM2 C2' N3' 11.5 269.7
C2' CM2 HM21 HM22 125.3 120.0
C2' CM2 HM21 HM23 234.7 240.0
HM22 CM2 HM21 HM23 109.4 120.0
HM22 CM2 C2' N3' 136.7 29.8
C2' CM2 HM22 HM21 229.1 239.9
C2' CM2 HM22 HM23 114.6 120.0
HM21 CM2 HM22 HM23 245.5 240.0
HM23 CM2 C2' N3' 246.2 149.7
C2' CM2 HM23 HM21 131.0 120.0
C2' CM2 HM23 HM22 245.4 240.0
HM21 CM2 HM23 HM22 114.5 120.0
N4' C4' N3' C5' 188.4 179.7
N3' C4' N4' HN41 180.0 180.3
N3' C4' N4' HN42 54.7 0.3
N3' C4' C5' C6' 355.7 359.8
N3' C4' C5' C7' 191.3 179.7
N3' C4' N4' C5' 171.6 180.3
N4' C4' C5' C6' 166.6 180.1
N4' C4' C5' C7' 2.2 0.0
HN41 N4' C4' HN42 125.3 180.0
C1' C6' C5' C4' 8.2 359.9
N3' C4' C5' N4' 189.1 179.7
C5' C4' N4' HN41 8.4 0.0
C5' C4' N4' HN42 243.0 180.0
C6' C5' C4' C7' 164.5 180.0
C4' C5' C6' H6' 188.2 180.1
C4' C5' C7' N3 284.2 85.0
C4' C5' C7' H7'1 49.5 205.0
C4' C5' C7' H7'2 159.0 325.0
HN41 N4' C4' C5' 8.4 0.0
C4' N4' HN41 HN42 234.7 180.0
HN42 N4' C4' C5' 243.0 180.0
C4' N4' HN42 HN41 127.3 180.0
C5' C6' C1' H1' 179.5 180.1
C1' C6' C5' H6' 180.0 179.9
C4' C5' C6' C7' 194.8 180.0
C6' C5' C7' N3 120.1 265.0
C6' C5' C7' H7'1 245.3 25.0
C6' C5' C7' H7'2 354.8 145.0
C4' C5' C7' C6' 164.2 180.0
C7' C5' C6' H6' 353.4 0.1
N3 C7' C5' H7'1 234.7 240.0
N3 C7' C5' H7'2 125.3 120.0
C5' C7' N3 C2 81.0 266.0
C5' C7' N3 C4 273.4 85.7
H7'1 C7' C5' H7'2 250.5 240.0
H6' C6' C1' H1' 359.5 359.9
C1' C6' H6' C5' 180.0 180.1
H6' C6' C5' C7' 353.4 0.1
C5' C7' N3 H7'1 125.3 120.0
C5' C7' N3 H7'2 234.8 240.0
H7'1 C7' N3 H7'2 109.5 120.0
C2 N3 C7' C4 167.6 180.3
C7' N3 C2 S1 195.6 180.0
C7' N3 C2 H2 15.6 359.9
C7' N3 C4 C5 158.2 179.8
C7' N3 C4 CM4 0.4 0.2
C5' C7' H7'1 N3 231.0 239.9
C5' C7' H7'1 H7'2 115.5 119.9
N3 C7' H7'1 H7'2 244.4 240.0
H7'1 C7' N3 C2 315.7 146.0
H7'1 C7' N3 C4 148.2 325.7
C5' C7' H7'2 N3 128.9 120.0
C5' C7' H7'2 H7'1 244.5 240.0
N3 C7' H7'2 H7'1 115.6 120.0
H7'2 C7' N3 C2 206.2 26.0
H7'2 C7' N3 C4 38.6 205.7
C2 N3 C7' H7'1 315.7 146.0
C2 N3 C7' H7'2 206.2 26.0
C7' N3 C2 C4 191.5 179.7
C2 N3 C4 C5 349.7 359.5
C2 N3 C4 CM4 191.9 179.9
S1 C2 N3 H2 180.0 180.1
N3 C2 S1 C5 2.5 0.0
C4 N3 C7' H7'1 148.2 325.7
C4 N3 C7' H7'2 38.6 205.7
C7' N3 C4 C2 168.5 180.3
C4 N3 C2 S1 4.1 0.3
C4 N3 C2 H2 184.1 180.2
S1 C5 C4 N3 11.8 0.4
N3 C4 C5 C6 207.9 180.2
C5 C4 N3 CM4 157.8 179.6
N3 C4 CM4 HM41 180.0 275.1
N3 C4 CM4 HM42 305.3 35.1
N3 C4 CM4 HM43 54.8 155.1
S1 C2 N3 C4 4.1 0.3
N3 C2 S1 H2 180.0 179.9
C2 S1 C5 C4 351.9 359.8
C2 S1 C5 C6 157.2 180.0
H2 C2 N3 C4 184.1 180.2
N3 C2 H2 S1 180.0 180.1
H2 C2 S1 C5 182.5 180.1
N3 C4 C5 S1 11.8 0.4
C5 S1 C2 H2 182.5 180.1
C4 C5 S1 C6 194.7 179.7
S1 C5 C4 CM4 168.1 180.0
S1 C5 C6 C7 52.1 269.9
S1 C5 C6 H61 177.4 29.9
S1 C5 C6 H62 286.8 150.0
N3 C4 C5 CM4 203.8 180.4
S1 C5 C4 C6 163.9 180.3
C4 C5 C6 C7 214.7 90.2
C4 C5 C6 H61 340.0 210.3
C4 C5 C6 H62 89.4 330.3
C5 C4 CM4 HM41 25.5 95.5
C5 C4 CM4 HM42 150.9 215.5
C5 C4 CM4 HM43 260.4 335.5
S1 C5 C6 C4 197.4 179.7
C6 C5 C4 CM4 4.1 359.8
C7 C6 C5 H61 234.7 240.0
C7 C6 C5 H62 125.3 119.9
C5 C6 C7 O7 279.7 180.0
C5 C6 C7 H71 44.9 300.1
C5 C6 C7 H72 154.5 60.1
H61 C6 C5 H62 250.6 239.9
N3 C4 CM4 C5 154.4 179.6
CM4 C4 C5 C6 4.1 359.8
HM41 CM4 C4 HM42 234.7 240.0
HM41 CM4 C4 HM43 125.2 120.0
HM42 CM4 C4 HM43 250.5 240.0
C4 CM4 HM41 HM42 125.3 120.0
C4 CM4 HM41 HM43 234.8 240.0
HM42 CM4 HM41 HM43 109.5 120.0
C4 CM4 HM42 HM41 228.6 240.0
C4 CM4 HM42 HM43 114.3 120.0
HM41 CM4 HM42 HM43 245.7 240.0
C4 CM4 HM43 HM41 131.3 120.0
C4 CM4 HM43 HM42 245.6 240.0
HM41 CM4 HM43 HM42 114.3 120.0
C5 C6 C7 H61 125.3 120.1
C5 C6 C7 H62 234.7 240.1
H61 C6 C7 H62 109.4 120.0
O7 C7 C6 H71 234.7 239.9
O7 C7 C6 H72 125.2 120.0
C6 C7 O7 PA 208.4 180.0
H71 C7 C6 H72 250.5 240.0
C5 C6 H61 C7 230.9 240.0
C5 C6 H61 H62 115.4 120.0
C7 C6 H61 H62 244.6 240.0
H61 C6 C7 O7 154.3 59.9
H61 C6 C7 H71 279.6 180.0
H61 C6 C7 H72 29.1 300.0
C5 C6 H62 C7 129.1 119.9
C5 C6 H62 H61 244.5 239.9
C7 C6 H62 H61 115.4 120.0
H62 C6 C7 O7 45.0 299.9
H62 C6 C7 H71 170.2 60.0
H62 C6 C7 H72 279.7 180.0
O7 C7 C6 H61 154.3 59.9
O7 C7 C6 H62 45.0 299.9
C6 C7 O7 H71 125.3 120.0
C6 C7 O7 H72 234.8 240.0
H71 C7 O7 H72 109.5 120.0
C7 O7 PA O1A 152.9 295.1
C7 O7 PA O2A 23.2 55.0
C7 O7 PA O3A 266.0 175.0
H71 C7 C6 H61 279.6 180.0
H71 C7 C6 H62 170.2 60.0
C6 C7 H71 O7 243.6 240.0
C6 C7 H71 H72 121.8 120.0
O7 C7 H71 H72 238.2 240.0
H71 C7 O7 PA 83.2 60.0
H72 C7 C6 H61 29.1 300.0
H72 C7 C6 H62 279.7 180.0
C6 C7 H72 O7 116.3 120.0
C6 C7 H72 H71 238.1 240.0
O7 C7 H72 H71 121.8 120.0
H72 C7 O7 PA 333.7 300.0
PA O7 C7 H71 83.2 60.0
PA O7 C7 H72 333.7 300.0
O1A PA O7 O2A 129.7 240.0
O1A PA O7 O3A 246.9 120.1
O2A PA O7 O3A 117.2 240.0
O7 PA O2A HOA2 180.0  
O7 PA O3A PB 111.4 200.0
O7 PA O1A O2A 230.2 119.9
O7 PA O1A O3A 114.6 240.0
O2A PA O1A O3A 244.5 120.0
O1A PA O2A HOA2 57.1  
O1A PA O3A PB 222.0 80.0
O7 PA O2A O1A 122.8 240.0
O7 PA O2A O3A 240.0 120.0
O1A PA O2A O3A 117.2 239.9
O2A PA O3A PB 346.0 319.9
O7 PA O3A O1A 249.4 120.0
O7 PA O3A O2A 125.4 240.1
O1A PA O3A O2A 236.0 120.0
O3A PA O2A HOA2 299.9  
PA O3A PB O1B 180.7 165.0
PA O3A PB O2B 53.5 285.1
PA O3A PB O3B 298.5 45.0
HOA2 O2A PA O3A 299.9  
O1B PB O3A O2B 127.2 239.9
O1B PB O3A O3B 242.2 120.0
O2B PB O3A O3B 115.0 240.0
O3A PB O3B HOB3 180.0  
O3A PB O1B O2B 253.0 120.1
O3A PB O1B O3B 110.1 240.0
O2B PB O1B O3B 217.2 120.0
O1B PB O3B HOB3 283.6  
O3A PB O2B O1B 104.2 239.9
O3A PB O2B O3B 248.5 120.0
O1B PB O2B O3B 144.3 240.0
O2B PB O3B HOB3 71.7  
O3A PB O3B O1B 256.4 120.0
O3A PB O3B O2B 108.2 240.0
O1B PB O3B O2B 211.8 120.0