Atom Nomenclature for N1J

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for N1J

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
C11 C4
C7 C5
C9 C6
C10 C7
C12 C8
C13 C9
N3 N1
C1 C10
C15 C11
C17 C12
C19 C13
C2 C14
C20 C15
C21 C16
C23 C17
C24 C18
C27 C19
C28 C20
C29 C21
C30 C22
C31 C23
C32 C24
C33 C25
F34 F1
N14 N2
N16 N3
N18 N4
N22 N5
N25 N6
N26 N7
N8 N8
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32