PDB Chemical Component N1H

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N1H

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.405 1.395
C1 N6 1.340 1.320
C1 N7 1.312 1.391
C2 C3 1.388 1.382
C2 H2 1.080 1.080
C3 C4 1.357 1.392
C3 H3 1.080 1.080
C4 C5 1.324 1.407
C4 N3 1.328 1.380
C5 N6 1.324 1.334
C5 CN4 1.336 1.417
N7 HN71 1.000 0.970
N7 HN72 1.000 0.970
N3 C8 1.334 1.375
N3 HN3 0.999 0.970
CN4 C8 1.400 1.357
CN4 HN4 1.080 1.081
C8 C1' 1.405 1.478
C1' C2' 1.396 1.396
C1' C6' 1.398 1.398
C2' C3' 1.390 1.380
C2' H2' 1.080 1.080
C3' CV' 1.532 1.507
C3' C4' 1.381 1.381
CV' CW' 1.528 1.507
CV' H311 1.100 1.090
CV' H312 1.100 1.090
CW' OX' 1.221 1.343
CW' OY' 1.222 1.209
OX' H33' 0.950 0.967
C4' C5' 1.398 1.393
C4' H4' 1.080 1.080
C5' C6' 1.407 1.397
C5' C1B 1.397 1.483
C6' O6' 1.372 1.357
O6' H6' 0.950 0.967
C1B C2B 1.395 1.393
C1B C6B 1.430 1.394
C2B C3B 1.386 1.380
C2B H2B 1.080 1.080
C3B C4B 1.392 1.383
C3B H3B 1.080 1.080
C4B C5B 1.381 1.383
C4B H4B 1.080 1.080
C5B N5B 1.326 1.481
C5B C6B 1.403 1.381
N5B O51 1.465 1.217
N5B O52 1.532 1.218
C6B H6B 1.080 1.080

Bond Angles for N1H

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 N6 116.4 121.1
C2 C1 N7 121.0 119.4
C1 C2 C3 121.8 119.6
C1 C2 H2 119.1 120.2
N6 C1 N7 122.6 119.4
C1 N6 C5 123.6 121.4
C1 N7 HN71 109.5 120.0
C1 N7 HN72 109.5 120.0
C3 C2 H2 119.1 120.2
C2 C3 C4 114.8 118.4
C2 C3 H3 122.6 120.7
C4 C3 H3 122.6 120.8
C3 C4 C5 124.9 119.2
C3 C4 N3 130.0 133.3
C5 C4 N3 105.1 107.5
C4 C5 N6 118.5 120.3
C4 C5 CN4 111.7 106.7
C4 N3 C8 112.5 108.7
C4 N3 HN3 123.7 125.7
N6 C5 CN4 129.8 133.1
C5 CN4 C8 106.0 107.9
C5 CN4 HN4 127.0 126.1
HN71 N7 HN72 109.5 120.0
C8 N3 HN3 123.8 125.6
N3 C8 CN4 104.7 109.2
N3 C8 C1' 120.3 125.4
C8 CN4 HN4 127.0 126.0
CN4 C8 C1' 135.0 125.4
C8 C1' C2' 120.6 120.1
C8 C1' C6' 122.8 120.1
C2' C1' C6' 116.6 119.8
C1' C2' C3' 122.2 120.2
C1' C2' H2' 118.9 119.9
C1' C6' C5' 123.2 119.6
C1' C6' O6' 116.6 120.2
C3' C2' H2' 118.9 119.9
C2' C3' CV' 120.1 119.8
C2' C3' C4' 119.4 120.4
CV' C3' C4' 120.5 119.8
C3' CV' CW' 109.4 109.5
C3' CV' H311 109.5 109.4
C3' CV' H312 109.5 109.5
C3' C4' C5' 121.5 120.3
C3' C4' H4' 119.3 119.9
CW' CV' H311 109.5 109.5
CW' CV' H312 109.5 109.5
CV' CW' OX' 116.0 120.0
CV' CW' OY' 115.9 120.0
H311 CV' H312 109.4 109.5
OX' CW' OY' 128.1 120.0
CW' OX' H33' 109.5 120.0
C5' C4' H4' 119.2 119.9
C4' C5' C6' 117.1 119.8
C4' C5' C1B 119.6 120.1
C6' C5' C1B 123.3 120.1
C5' C6' O6' 120.2 120.2
C5' C1B C2B 120.5 120.1
C5' C1B C6B 122.0 120.1
C6' O6' H6' 109.5 106.8
C2B C1B C6B 117.5 119.8
C1B C2B C3B 120.5 119.9
C1B C2B H2B 119.8 120.1
C1B C6B C5B 122.1 119.8
C1B C6B H6B 118.9 120.1
C3B C2B H2B 119.7 120.0
C2B C3B C4B 120.7 120.1
C2B C3B H3B 119.6 119.9
C4B C3B H3B 119.6 119.9
C3B C4B C5B 121.4 120.2
C3B C4B H4B 119.3 119.9
C5B C4B H4B 119.3 119.9
C4B C5B N5B 119.8 119.9
C4B C5B C6B 117.7 120.2
N5B C5B C6B 122.5 119.9
C5B N5B O51 121.8 120.0
C5B N5B O52 122.6 120.0
C5B C6B H6B 119.0 120.1
O51 N5B O52 115.6 120.0

Torsion Angles for N1H

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N6 C1 C2 N7 179.4 180.3
C2 C1 N6 C5 359.9 359.5
C2 C1 N7 HN71 8.9 0.0
C2 C1 N7 HN72 248.9 179.8
C3 C2 C1 H2 180.0 180.1
C1 C2 C3 C4 0.2 360.0
C1 C2 C3 H3 180.2 180.0
C2 C1 N6 N7 180.6 179.7
N6 C1 C2 C3 0.0 0.3
N6 C1 C2 H2 180.0 180.2
N6 C1 N7 HN71 189.5 179.7
N6 C1 N7 HN72 69.5 359.5
C4 C5 N6 C1 360.0 0.5
C1 N6 C5 CN4 180.3 180.3
C2 C1 N7 N6 179.4 180.3
N7 C1 C2 C3 180.6 180.0
N7 C1 C2 H2 0.6 359.9
N7 C1 N6 C5 179.3 179.8
HN71 N7 C1 HN72 120.0 180.2
C3 C2 C1 N6 0.0 0.3
C3 C2 C1 N7 180.6 180.0
C1 C2 C3 H2 180.0 179.9
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 359.7 360.0
C2 C3 C4 N3 179.4 180.0
H2 C2 C1 N6 180.0 180.2
H2 C2 C1 N7 0.6 359.9
C1 C2 H2 C3 180.0 180.1
H2 C2 C3 C4 180.1 180.1
H2 C2 C3 H3 0.2 0.1
C4 C3 C2 H2 180.1 180.1
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 N3 180.3 180.0
C3 C4 C5 N6 0.2 359.8
C3 C4 C5 CN4 180.0 179.9
C3 C4 N3 C8 180.2 180.0
C3 C4 N3 HN3 0.2 0.0
H3 C3 C2 H2 0.2 0.1
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 179.7 180.0
H3 C3 C4 N3 359.4 360.0
C1 N6 C5 C4 360.0 0.5
C5 C4 C3 H3 179.7 180.0
C3 C4 C5 N3 179.8 180.0
C5 C4 N3 C8 359.9 0.1
C5 C4 N3 HN3 179.9 180.0
N6 C5 C4 CN4 180.2 179.9
C4 C5 CN4 C8 359.7 0.1
C4 C5 CN4 HN4 179.7 180.1
N3 C4 C3 H3 359.4 360.0
C3 C4 N3 C5 180.3 180.0
N3 C4 C5 N6 180.5 179.8
N3 C4 C5 CN4 0.2 359.9
C8 N3 C4 HN3 180.0 180.0
C4 N3 C8 CN4 360.0 360.0
C4 N3 C8 C1' 178.9 179.9
C5 N6 C1 N7 179.3 179.8
N6 C5 C4 N3 180.5 179.8
C4 C5 N6 CN4 179.7 180.2
N6 C5 CN4 C8 179.5 180.2
N6 C5 CN4 HN4 359.5 0.2
CN4 C5 C4 N3 0.2 359.9
C4 C5 CN4 N6 180.3 179.8
N3 C8 CN4 C5 0.2 360.0
C8 CN4 C5 HN4 180.0 180.0
C5 CN4 C8 C1' 181.5 180.0
C1 N7 HN71 HN72 240.0 179.8
C1 N7 HN72 HN71 120.0 180.2
C4 N3 C8 HN3 180.0 180.0
C5 CN4 C8 N3 0.2 360.0
N3 C8 CN4 HN4 180.2 180.0
CN4 C8 N3 C1' 181.1 180.1
N3 C8 C1' C2' 184.4 320.0
N3 C8 C1' C6' 5.0 139.7
C4 N3 HN3 C8 180.0 180.0
HN3 N3 C8 CN4 180.0 180.0
HN3 N3 C8 C1' 358.9 360.0
C5 CN4 C8 HN4 180.0 180.0
CN4 C8 N3 HN3 180.0 180.0
N3 C8 CN4 C1' 178.7 179.9
CN4 C8 C1' C2' 2.9 140.0
CN4 C8 C1' C6' 183.6 319.6
C5 CN4 HN4 C8 180.0 180.0
HN4 CN4 C8 C1' 1.5 0.0
C1' C8 N3 HN3 358.9 360.0
N3 C8 C1' CN4 181.5 180.1
C1' C8 CN4 HN4 1.5 0.0
C2' C1' C8 C6' 179.4 180.3
C8 C1' C2' C3' 180.7 180.0
C8 C1' C2' H2' 0.7 359.9
C8 C1' C6' C5' 178.9 179.8
C8 C1' C6' O6' 357.4 0.3
C8 C1' C2' C6' 180.6 179.7
C2' C1' C6' C5' 359.5 359.5
C2' C1' C6' O6' 178.0 180.0
C3' C2' C1' H2' 180.0 180.0
C1' C2' C3' CV' 180.3 180.0
C1' C2' C3' C4' 0.2 359.9
C8 C1' C6' C2' 179.4 180.3
C6' C1' C2' C3' 0.1 0.3
C6' C1' C2' H2' 180.1 180.2
C4' C5' C6' C1' 0.6 0.5
C1' C6' C5' C1B 181.3 180.3
C5' C6' C1' O6' 181.5 179.5
C1' C6' O6' H6' 55.2 269.5
C3' C2' C1' C6' 0.1 0.3
C1' C2' C3' H2' 180.0 180.0
CV' C3' C2' C4' 180.2 180.0
C2' C3' CV' CW' 288.7 90.0
C2' C3' CV' H311 168.7 210.0
C2' C3' CV' H312 48.7 330.0
C2' C3' C4' C5' 359.9 0.1
C2' C3' C4' H4' 179.9 180.0
H2' C2' C1' C6' 180.1 180.2
C1' C2' H2' C3' 180.0 180.0
H2' C2' C3' CV' 0.3 0.0
H2' C2' C3' C4' 180.2 180.0
CV' C3' C2' H2' 0.3 0.0
C2' C3' CV' C4' 179.8 180.0
CV' C3' C4' C5' 179.7 180.0
CV' C3' C4' H4' 359.8 359.9
CW' CV' C3' H311 120.0 240.1
CW' CV' C3' H312 240.0 120.0
C3' CV' CW' OX' 80.0 180.0
C3' CV' CW' OY' 260.3 0.0
H311 CV' C3' H312 119.9 240.0
C4' C3' C2' H2' 180.2 180.0
C2' C3' C4' CV' 180.2 180.0
C4' C3' CV' CW' 108.9 270.1
C4' C3' CV' H311 348.9 30.0
C4' C3' CV' H312 228.9 150.0
C5' C4' C3' H4' 180.0 180.1
C3' C4' C5' C6' 359.7 359.7
C3' C4' C5' C1B 179.1 179.9
CW' CV' C3' C4' 108.9 270.1
C3' CV' CW' H311 239.9 119.9
C3' CV' CW' H312 120.0 240.0
H311 CV' CW' H312 240.1 120.0
OX' CW' CV' OY' 179.8 179.9
CV' CW' OX' H33' 180.3 180.0
H311 CV' C3' C4' 348.9 30.0
C3' CV' H311 CW' 120.0 240.0
C3' CV' H311 H312 240.0 120.0
CW' CV' H311 H312 120.0 240.0
H311 CV' CW' OX' 200.1 60.0
H311 CV' CW' OY' 20.3 240.1
H312 CV' C3' C4' 228.9 150.0
C3' CV' H312 CW' 240.1 120.0
C3' CV' H312 H311 120.1 240.0
CW' CV' H312 H311 240.0 120.0
H312 CV' CW' OX' 320.0 300.0
H312 CV' CW' OY' 140.3 120.0
OX' CW' CV' H311 200.1 60.0
OX' CW' CV' H312 320.0 300.0
CV' CW' OX' OY' 180.3 180.1
OY' CW' CV' H311 20.3 240.1
OY' CW' CV' H312 140.3 120.0
CV' CW' OY' OX' 179.7 179.9
OY' CW' OX' H33' 0.0 359.9
H33' OX' CW' OY' 0.0 359.9
C1' C6' C5' C4' 0.6 0.5
C3' C4' C5' H4' 180.0 179.9
C6' C5' C4' C1B 180.7 179.8
C4' C5' C6' O6' 182.1 180.0
C4' C5' C1B C2B 140.1 130.0
C4' C5' C1B C6B 320.9 309.8
C3' C4' H4' C5' 180.0 180.1
H4' C4' C5' C6' 179.7 179.8
H4' C4' C5' C1B 359.1 0.0
C1' C6' C5' O6' 178.4 180.5
C6' C5' C4' H4' 179.7 179.8
C4' C5' C6' C1B 179.3 180.2
C6' C5' C1B C2B 319.3 310.2
C6' C5' C1B C6B 140.2 130.0
C5' C6' O6' H6' 233.7 90.0
C1B C5' C4' H4' 359.1 0.0
C4' C5' C1B C6' 180.7 179.8
C1B C5' C6' O6' 2.8 359.8
C2B C1B C5' C6B 179.2 180.2
C5' C1B C2B C3B 181.1 180.0
C5' C1B C2B H2B 1.1 0.0
C5' C1B C6B C5B 179.0 179.7
C5' C1B C6B H6B 358.9 0.2
C1' C6' O6' C5' 181.5 179.5
O6' C6' C5' C1B 2.8 359.8
C5' C1B C2B C6B 180.8 179.8
C2B C1B C6B C5B 359.8 359.5
C2B C1B C6B H6B 179.8 180.0
C3B C2B C1B H2B 180.0 180.0
C1B C2B C3B C4B 359.9 0.0
C1B C2B C3B H3B 179.9 180.0
C5' C1B C6B C2B 179.2 180.2
C6B C1B C2B C3B 0.3 0.2
C6B C1B C2B H2B 180.3 180.2
C4B C5B C6B C1B 359.9 0.5
N5B C5B C6B C1B 178.8 180.2
C5B C6B C1B H6B 180.0 179.5
C3B C2B C1B C6B 0.3 0.2
C1B C2B C3B H2B 180.0 180.0
C4B C3B C2B H3B 180.0 180.0
C2B C3B C4B C5B 359.7 0.0
C2B C3B C4B H4B 179.7 180.0
H2B C2B C1B C6B 180.3 180.2
C1B C2B H2B C3B 180.0 180.0
H2B C2B C3B C4B 179.9 180.0
H2B C2B C3B H3B 359.9 0.0
C4B C3B C2B H2B 179.9 180.0
C2B C3B C4B H3B 180.0 180.0
C5B C4B C3B H4B 180.0 180.1
C3B C4B C5B N5B 181.4 180.0
C3B C4B C5B C6B 0.3 359.7
H3B C3B C2B H2B 359.9 0.0
C2B C3B H3B C4B 180.0 180.0
H3B C3B C4B C5B 179.7 180.0
H3B C3B C4B H4B 359.7 359.9
C1B C6B C5B C4B 359.9 0.5
C5B C4B C3B H3B 179.7 180.0
C3B C4B C5B H4B 180.0 179.9
N5B C5B C4B C6B 181.1 180.3
C4B C5B N5B O51 157.0 359.9
C4B C5B N5B O52 337.4 180.0
C4B C5B C6B H6B 179.9 180.0
H4B C4B C3B H3B 359.7 359.9
C3B C4B H4B C5B 180.0 180.1
H4B C4B C5B N5B 1.4 0.1
H4B C4B C5B C6B 180.4 179.8
C1B C6B C5B N5B 178.8 180.2
N5B C5B C4B H4B 1.4 0.1
C4B C5B N5B C6B 178.9 179.7
N5B C5B C6B H6B 358.8 359.7
O51 N5B C5B O52 179.5 180.0
C1B C6B C5B H6B 180.0 180.5
C6B C5B C4B H4B 180.4 179.8
C4B C5B C6B N5B 181.1 180.3
C6B C5B N5B O51 338.1 180.2
C6B C5B N5B O52 158.5 0.3
O51 N5B C5B C6B 338.1 180.2
C5B N5B O51 O52 180.4 180.0
O52 N5B C5B C6B 158.5 0.3
C5B N5B O52 O51 179.6 180.0
C1B C6B H6B C5B 180.0 179.5