PDB Chemical Component N1D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N1D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C01	O05	1.430	1.428
O05	C06	1.368	1.359
C06	C07	1.383	1.386
C06	C14	1.409	1.393
C07	C09	1.380	1.380
C09	C11	1.394	1.393
C11	C12	1.388	1.394
C11	C20	1.486	1.484
C12	C14	1.380	1.383
C14	O15	1.365	1.360
O15	C16	1.424	1.429
C20	C21	1.353	1.358
C20	C35	1.442	1.467
C21	N23	1.349	1.360
N23	C24	1.463	1.465
N23	C28	1.395	1.342
C28	O29	1.249	1.219
C28	C30	1.471	1.475
C30	C31	1.435	1.396
C30	C35	1.407	1.398
C31	C33	1.373	1.342
C33	S34	1.729	1.756
C33	C36	1.506	1.466
S34	C35	1.736	1.757
C36	O37	1.223	1.216
C36	N38	1.354	1.348
N38	C39	1.468	1.471
N38	C49	1.457	1.469
C39	C42	1.513	1.534
C42	N45	1.483	1.469
N45	C46	1.475	1.470
N45	S52	1.631	1.656
C46	C49	1.514	1.529
S52	C53	1.752	1.813
S52	O57	1.427	1.421
S52	O58	1.426	1.421
C01	H011	1.100	1.090
C01	H012	1.100	1.090
C01	H013	1.100	1.090
C07	H07	1.080	1.080
C09	H09	1.080	1.081
C12	H12	1.081	1.081
C16	H161	1.100	1.090
C16	H162	1.100	1.090
C16	H163	1.100	1.090
C21	H21	1.080	1.080
C24	H241	1.100	1.090
C24	H242	1.100	1.089
C24	H243	1.100	1.090
C31	H31	1.080	1.080
C39	H391	1.100	1.091
C39	H392	1.100	1.089
C49	H491	1.100	1.091
C49	H492	1.100	1.090
C42	H421	1.100	1.090
C42	H422	1.099	1.090
C46	H461	1.101	1.089
C46	H462	1.100	1.091
C53	H531	1.100	1.090
C53	H532	1.100	1.090
C53	H533	1.099	1.091

Bond Angles for N1D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C01	O05	C06	117.6	117.1
O05	C01	H011	109.5	109.5
O05	C01	H012	109.5	109.4
O05	C01	H013	109.4	109.4
O05	C06	C07	124.3	120.0
O05	C06	C14	116.0	120.0
C07	C06	C14	119.7	120.1
C06	C07	C09	119.6	120.1
C06	C07	H07	120.2	119.9
C06	C14	C12	120.1	120.0
C06	C14	O15	116.3	120.0
C07	C09	C11	121.1	120.1
C09	C07	H07	120.2	120.0
C07	C09	H09	119.4	120.0
C09	C11	C12	119.3	119.9
C09	C11	C20	120.0	120.1
C11	C09	H09	119.4	120.0
C12	C11	C20	120.7	120.0
C11	C12	C14	120.1	119.9
C11	C12	H12	120.0	120.1
C11	C20	C21	119.3	120.2
C11	C20	C35	123.7	120.1
C12	C14	O15	123.6	120.0
C14	C12	H12	120.0	120.1
C14	O15	C16	116.8	117.0
O15	C16	H161	109.5	109.5
O15	C16	H162	109.5	109.5
O15	C16	H163	109.5	109.4
C21	C20	C35	117.0	119.7
C20	C21	N23	123.5	121.5
C20	C21	H21	118.2	119.2
C20	C35	C30	122.0	118.8
C20	C35	S34	126.7	131.5
C21	N23	C24	120.0	118.9
C21	N23	C28	122.7	122.3
N23	C21	H21	118.2	119.3
C24	N23	C28	117.4	118.9
N23	C24	H241	109.5	109.4
N23	C24	H242	109.4	109.4
N23	C24	H243	109.5	109.4
N23	C28	O29	119.6	119.9
N23	C28	C30	117.3	120.2
O29	C28	C30	123.1	119.9
C28	C30	C31	131.3	129.8
C28	C30	C35	117.4	117.5
C31	C30	C35	111.3	112.7
C30	C31	C33	113.7	115.6
C30	C31	H31	123.2	122.2
C30	C35	S34	111.3	109.7
C31	C33	S34	111.5	110.5
C31	C33	C36	141.0	124.8
C33	C31	H31	123.2	122.2
S34	C33	C36	107.5	124.8
C33	S34	C35	92.2	91.5
C33	C36	O37	117.9	120.0
C33	C36	N38	120.9	120.0
O37	C36	N38	121.2	120.0
C36	N38	C39	118.0	120.5
C36	N38	C49	132.9	120.6
C39	N38	C49	109.0	118.8
N38	C39	C42	110.4	108.6
N38	C39	H391	109.2	109.6
N38	C39	H392	109.2	109.6
N38	C49	C46	109.8	108.9
N38	C49	H491	109.4	109.6
N38	C49	H492	109.4	109.6
C39	C42	N45	109.6	108.7
C42	C39	H391	109.2	109.6
C42	C39	H392	109.2	109.7
C39	C42	H421	109.4	109.6
C39	C42	H422	109.4	109.6
C42	N45	C46	112.6	118.8
C42	N45	S52	115.6	120.6
N45	C42	H421	109.5	109.7
N45	C42	H422	109.4	109.7
C46	N45	S52	114.6	120.5
N45	C46	C49	110.1	108.7
N45	C46	H461	109.3	109.6
N45	C46	H462	109.3	109.6
N45	S52	C53	107.6	104.5
N45	S52	O57	106.9	104.3
N45	S52	O58	107.0	104.2
C46	C49	H491	109.4	109.5
C46	C49	H492	109.4	109.5
C49	C46	H461	109.3	109.7
C49	C46	H462	109.3	109.5
C53	S52	O57	108.4	110.6
C53	S52	O58	108.3	110.5
S52	C53	H531	109.5	109.5
S52	C53	H532	109.5	109.5
S52	C53	H533	109.5	109.5
O57	S52	O58	118.3	121.0
H011	C01	H012	109.5	109.5
H011	C01	H013	109.5	109.5
H012	C01	H013	109.4	109.5
H161	C16	H162	109.4	109.5
H161	C16	H163	109.5	109.5
H162	C16	H163	109.5	109.5
H241	C24	H242	109.5	109.5
H241	C24	H243	109.5	109.5
H242	C24	H243	109.5	109.5
H391	C39	H392	109.5	109.8
H491	C49	H492	109.5	109.7
H421	C42	H422	109.5	109.7
H461	C46	H462	109.5	109.8
H531	C53	H532	109.5	109.5
H531	C53	H533	109.5	109.4
H532	C53	H533	109.5	109.5

Torsion Angles for N1D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C01	O05	C06	C07	358.1	0.0
C01	O05	C06	C14	176.9	179.8
H011	C01	O05	H012	240.0	240.0
H011	C01	O05	H013	120.0	120.0
H012	C01	O05	H013	240.1	240.1
C06	O05	C01	H011	180.0	180.0
C06	O05	C01	H012	300.0	300.0
C06	O05	C01	H013	60.0	60.0
C07	C06	O05	C14	181.2	180.3
O05	C06	C07	C09	179.5	180.0
O05	C06	C07	H07	359.5	359.9
O05	C06	C14	C12	178.8	179.8
O05	C06	C14	O15	0.8	0.0
O05	C06	C07	C14	178.8	179.7
C07	C06	C14	C12	357.7	359.5
C07	C06	C14	O15	179.7	179.7
C06	C07	C09	C11	359.9	359.9
C09	C07	C06	H07	180.0	180.1
C06	C07	C09	H09	179.9	179.9
O05	C06	C14	C07	181.1	180.3
C14	C06	C07	C09	0.7	0.3
C14	C06	C07	H07	180.7	180.2
C11	C12	C14	C06	3.3	0.4
C12	C14	C06	O15	178.1	179.8
C06	C14	C12	H12	183.3	180.3
C06	C14	O15	C16	158.0	180.1
C09	C07	C06	C14	0.7	0.3
C06	C07	C09	H07	180.0	179.9
C07	C09	C11	C12	1.1	0.0
C07	C09	C11	C20	179.7	180.0
C11	C09	C07	H09	180.0	180.0
C11	C09	C07	H07	179.9	180.1
C07	C09	C11	H09	180.0	180.0
C12	C11	C09	C20	181.4	180.0
C09	C11	C12	C14	357.3	359.8
C09	C11	C12	H12	177.3	180.0
C09	C11	C20	C21	326.9	115.0
C09	C11	C20	C35	144.4	294.8
C06	C14	C12	C11	3.3	0.4
C09	C11	C12	C20	178.6	180.0
C12	C11	C09	H09	181.1	180.0
C12	C11	C20	C21	145.5	295.0
C12	C11	C20	C35	323.0	114.8
C11	C12	C14	O15	181.2	180.2
C14	C12	C11	H12	180.0	179.9
C09	C11	C20	C12	181.5	180.0
C20	C11	C09	H09	359.7	360.0
C20	C11	C12	C14	178.7	179.8
C20	C11	C12	H12	358.8	360.0
C21	C20	C11	C35	182.5	180.2
C11	C20	C21	N23	178.8	180.1
C11	C20	C21	H21	358.8	0.0
C11	C20	C35	C30	182.0	179.8
C11	C20	C35	S34	2.2	0.4
C06	C14	C12	O15	182.1	180.2
C14	C12	C11	C20	178.7	179.8
C11	C12	C14	H12	180.0	180.1
C12	C14	O15	C16	340.0	0.3
C06	C14	O15	C12	178.0	179.8
O15	C14	C12	H12	1.2	0.1
C14	O15	C16	H161	180.0	60.0
C14	O15	C16	H162	300.0	180.0
C14	O15	C16	H163	60.0	300.0
H161	C16	O15	H162	240.0	240.0
H161	C16	O15	H163	120.0	120.0
H162	C16	O15	H163	240.0	240.1
C11	C20	C21	C35	177.7	179.8
C21	C20	C35	C30	359.5	359.6
C21	C20	C35	S34	179.8	180.2
C20	C21	N23	C24	179.3	180.0
C20	C21	N23	C28	359.9	359.9
N23	C21	C20	H21	180.0	180.0
C11	C20	C35	C21	182.4	180.2
C35	C20	C21	N23	1.1	0.3
C35	C20	C21	H21	181.1	180.2
C28	C30	C35	C20	358.8	0.4
C31	C30	C35	C20	180.6	180.2
C30	C35	C20	S34	179.8	179.4
C33	S34	C35	C20	180.0	179.7
N23	C21	C20	C35	1.1	0.3
C20	C21	N23	H21	180.0	180.0
C24	N23	C21	C28	179.4	180.0
C21	N23	C24	H241	180.0	90.0
C21	N23	C24	H242	300.0	210.0
C21	N23	C24	H243	60.0	330.0
C21	N23	C28	O29	182.0	180.1
C21	N23	C28	C30	358.4	360.0
C21	N23	C24	C28	180.6	180.0
C24	N23	C21	H21	359.3	0.0
C24	N23	C28	O29	2.6	0.1
C24	N23	C28	C30	179.0	180.0
H241	C24	N23	H242	240.0	240.0
H241	C24	N23	H243	120.0	120.0
H242	C24	N23	H243	240.0	240.0
C21	N23	C28	C24	179.4	180.0
C28	N23	C21	H21	179.9	180.0
C28	N23	C24	H241	359.4	270.0
C28	N23	C24	H242	119.4	30.0
C28	N23	C24	H243	239.4	150.0
O29	C28	N23	C30	183.6	180.1
N23	C28	C30	C31	180.0	180.1
N23	C28	C30	C35	2.1	359.8
N23	C28	O29	C30	176.2	179.9
O29	C28	C30	C31	356.3	360.0
O29	C28	C30	C35	178.4	179.7
C20	C35	C30	C28	358.8	0.4
N23	C28	C30	O29	183.7	180.1
C31	C30	C28	C35	177.8	180.2
C28	C30	C31	C33	181.0	180.0
C28	C30	C31	H31	1.1	360.0
C28	C30	C35	S34	178.6	179.9
C20	C35	C30	C31	180.6	180.2
C28	C30	C31	C35	182.1	179.8
C31	C30	C35	S34	0.4	359.7
C30	C31	C33	S34	1.2	360.0
C30	C31	C33	C36	178.1	180.0
C33	C31	C30	H31	180.0	180.0
C20	C35	C30	S34	180.2	180.5
C28	C30	C35	C31	178.3	180.2
C35	C30	C31	C33	359.0	0.2
C35	C30	C31	H31	179.0	180.2
C33	S34	C35	C30	0.2	0.3
C33	C31	C30	C35	359.0	0.2
C30	C31	C33	H31	180.0	180.0
S34	C33	C31	C36	183.1	180.0
C31	C33	S34	C35	359.2	359.9
C31	C33	C36	O37	184.3	34.6
C31	C33	C36	N38	1.1	214.6
C20	C35	S34	C33	180.0	179.7
C30	C35	S34	C33	0.2	0.3
C31	C33	S34	C36	178.0	180.0
S34	C33	C31	H31	181.2	180.0
S34	C33	C36	O37	1.3	214.6
S34	C33	C36	N38	178.1	34.6
C31	C33	C36	S34	183.0	180.0
C36	C33	C31	H31	358.1	360.0
C36	C33	S34	C35	181.2	179.9
O37	C36	C33	N38	183.2	180.1
C33	C36	N38	C39	181.9	6.3
C33	C36	N38	C49	3.4	185.9
C20	C35	S34	C30	179.8	179.4
C35	S34	C33	C36	181.2	179.9
C33	C36	O37	N38	176.7	179.9
O37	C36	N38	C39	358.6	186.2
O37	C36	N38	C49	180.1	5.9
C33	C36	N38	O37	183.4	180.1
C39	N38	C36	C49	178.5	180.3
C36	N38	C39	C42	243.4	124.8
C36	N38	C39	H391	3.5	244.5
C36	N38	C39	H392	123.2	5.0
C36	N38	C49	C46	116.3	235.2
C36	N38	C49	H491	236.3	355.0
C36	N38	C49	H492	356.2	115.5
C36	N38	C39	C49	181.2	179.7
C39	N38	C49	C46	297.7	54.9
C39	N38	C49	H491	57.7	174.7
C39	N38	C49	H492	177.7	295.2
N38	C39	C42	N45	303.1	49.4
C42	C39	N38	H391	239.8	240.3
C42	C39	N38	H392	120.1	119.8
N38	C39	C42	H421	63.2	169.1
N38	C39	C42	H422	183.1	289.6
H391	C39	N38	H392	240.3	239.5
C36	N38	C49	C39	178.6	180.3
C49	N38	C39	C42	62.2	305.1
C49	N38	C39	H391	182.3	64.8
C49	N38	C39	H392	302.0	185.3
N45	C46	C49	N38	58.1	310.8
C46	C49	N38	H491	240.0	240.2
C46	C49	N38	H492	120.0	119.7
N38	C49	C46	H461	298.1	190.9
N38	C49	C46	H462	178.2	70.5
H491	C49	N38	H492	240.1	239.5
C42	C39	N38	C49	62.2	305.1
N38	C39	C42	H391	120.2	119.7
N38	C39	C42	H392	239.9	240.2
C39	C42	N45	C46	53.4	304.8
C39	C42	N45	S52	187.7	124.8
N45	C42	C39	H421	239.9	240.2
N45	C42	C39	H422	120.0	119.8
H391	C39	C42	H392	119.7	120.5
H421	C42	C39	H422	240.1	239.6
N45	C42	C39	H391	182.9	289.7
N45	C42	C39	H392	63.2	169.2
C39	C42	N45	H421	120.0	119.7
C39	C42	N45	H422	240.0	240.3
C46	N45	C42	S52	225.6	179.9
C42	N45	C46	C49	305.9	55.1
C42	N45	C46	H461	66.0	175.0
C42	N45	C46	H462	185.8	295.5
C42	N45	S52	C53	50.9	90.0
C42	N45	S52	O57	294.7	206.1
C42	N45	S52	O58	167.1	333.9
H421	C42	N45	H422	119.9	120.5
N38	C49	C46	N45	58.1	310.8
C42	N45	C46	S52	134.8	180.1
C46	N45	C42	H421	293.3	185.0
C46	N45	C42	H422	173.4	64.5
C46	N45	S52	C53	184.3	270.0
C46	N45	S52	O57	68.1	26.1
C46	N45	S52	O58	300.5	153.9
N45	C46	C49	H491	298.1	191.0
N45	C46	C49	H492	178.2	70.6
C49	C46	N45	H461	239.9	240.1
C49	C46	N45	H462	120.1	119.6
H461	C46	N45	H462	240.2	239.5
C42	N45	S52	C46	226.6	179.9
S52	N45	C42	H421	67.7	5.1
S52	N45	C42	H422	307.7	244.6
S52	N45	C46	C49	171.1	235.1
S52	N45	C46	H461	291.2	354.9
S52	N45	C46	H462	51.0	115.5
C53	S52	N45	O57	116.2	243.9
C53	S52	N45	O58	243.8	116.1
N45	S52	C53	H531	180.0	60.0
N45	S52	C53	H532	300.0	180.0
N45	S52	C53	H533	60.0	300.0
O57	S52	N45	O58	127.6	232.2
N38	C49	C46	H491	120.1	119.8
N38	C49	C46	H492	240.0	240.2
C49	C46	N45	S52	171.1	235.1
N45	C46	C49	H461	120.1	119.8
N45	C46	C49	H462	239.9	240.3
H491	C49	C46	H492	119.9	120.4
H461	C46	C49	H462	119.8	120.5
N45	S52	C53	O57	244.8	111.6
N45	S52	C53	O58	115.3	248.4
O57	S52	C53	O58	230.5	136.8
H531	C53	S52	H532	240.0	240.0
H531	C53	S52	H533	120.0	120.0
H532	C53	S52	H533	240.0	240.0
N45	S52	O57	C53	115.7	248.2
N45	S52	O57	O58	239.4	116.7
C53	S52	O57	O58	123.7	228.4
O57	S52	C53	H531	295.3	308.4
O57	S52	C53	H532	55.3	68.4
O57	S52	C53	H533	175.2	188.4
N45	S52	O58	C53	244.3	111.8
N45	S52	O58	O57	120.6	243.3
C53	S52	O58	O57	236.3	131.6
O58	S52	C53	H531	64.7	171.6
O58	S52	C53	H532	184.7	291.6
O58	S52	C53	H533	304.7	51.6
H011	C01	O05	C06	180.0	180.0
O05	C01	H011	H012	120.0	120.0
O05	C01	H011	H013	240.0	240.0
H012	C01	H011	H013	120.0	120.0
H012	C01	O05	C06	300.0	300.0
O05	C01	H012	H011	240.0	239.9
O05	C01	H012	H013	119.9	119.9
H011	C01	H012	H013	240.0	240.0
H013	C01	O05	C06	60.0	60.0
O05	C01	H013	H011	120.0	120.1
O05	C01	H013	H012	240.0	240.1
H011	C01	H013	H012	120.0	120.0
H07	C07	C06	C14	180.7	180.2
C06	C07	H07	C09	180.0	180.1
H07	C07	C09	C11	179.9	180.1
H07	C07	C09	H09	359.9	0.1
C07	C09	H09	C11	180.0	180.0
H09	C09	C07	H07	359.9	0.1
H09	C09	C11	C12	181.1	180.0
H09	C09	C11	C20	359.7	360.0
H12	C12	C11	C20	358.8	360.0
C11	C12	H12	C14	180.0	179.9
H12	C12	C14	O15	1.2	0.1
O15	C16	H161	H162	120.0	120.0
O15	C16	H161	H163	240.0	240.1
H162	C16	H161	H163	120.0	120.0
O15	C16	H162	H161	240.0	239.9
O15	C16	H162	H163	120.0	119.9
H161	C16	H162	H163	240.0	240.0
O15	C16	H163	H161	120.1	120.0
O15	C16	H163	H162	240.0	240.1
H161	C16	H163	H162	119.9	120.0
H21	C21	C20	C35	181.1	180.2
C20	C21	H21	N23	180.0	180.0
H21	C21	N23	C24	359.3	0.0
H21	C21	N23	C28	179.9	180.0
H241	C24	N23	C28	359.4	270.0
N23	C24	H241	H242	120.0	119.9
N23	C24	H241	H243	240.0	240.1
H242	C24	H241	H243	120.0	120.1
H242	C24	N23	C28	119.4	30.0
N23	C24	H242	H241	240.0	240.0
N23	C24	H242	H243	120.0	120.0
H241	C24	H242	H243	240.0	239.9
H243	C24	N23	C28	239.4	150.0
N23	C24	H243	H241	120.0	119.9
N23	C24	H243	H242	240.0	240.0
H241	C24	H243	H242	120.0	120.1
H31	C31	C30	C35	179.0	180.2
C30	C31	H31	C33	180.0	180.0
H31	C31	C33	S34	181.2	180.0
H31	C31	C33	C36	358.1	360.0
H391	C39	N38	C49	182.3	64.8
N38	C39	H391	C42	239.1	240.9
N38	C39	H391	H392	119.5	120.4
H391	C39	C42	N45	182.9	289.7
C42	C39	H391	H392	240.5	239.5
H391	C39	C42	H421	303.0	49.5
H391	C39	C42	H422	62.9	169.9
H392	C39	N38	C49	302.0	185.3
N38	C39	H392	C42	120.9	119.2
N38	C39	H392	H391	240.4	239.6
H392	C39	C42	N45	63.2	169.2
C42	C39	H392	H391	119.6	120.4
H392	C39	C42	H421	183.3	289.0
H392	C39	C42	H422	303.2	49.4
N38	C49	H491	C46	239.7	240.6
N38	C49	H491	H492	119.9	120.4
C46	C49	H491	H492	240.1	239.8
H491	C49	C46	H461	178.0	71.2
H491	C49	C46	H462	58.2	310.7
N38	C49	H492	C46	120.3	119.4
N38	C49	H492	H491	240.1	239.6
C46	C49	H492	H491	119.8	120.3
H492	C49	C46	H461	58.1	310.8
H492	C49	C46	H462	298.3	190.3
C39	C42	H421	N45	239.8	240.8
H421	C42	C39	H391	303.0	49.5
H421	C42	C39	H392	183.3	289.0
C39	C42	H421	H422	119.9	120.3
H421	C42	N45	C46	293.3	185.0
H421	C42	N45	S52	67.7	5.1
N45	C42	H421	H422	240.1	239.5
C39	C42	H422	N45	120.1	119.2
H422	C42	C39	H391	62.9	169.9
H422	C42	C39	H392	303.2	49.4
C39	C42	H422	H421	240.1	239.7
H422	C42	N45	C46	173.4	64.5
H422	C42	N45	S52	307.7	244.6
N45	C42	H422	H421	119.9	120.5
H461	C46	N45	S52	291.2	354.9
N45	C46	H461	C49	239.4	240.8
N45	C46	H461	H462	119.7	120.4
H461	C46	C49	H491	178.0	71.2
H461	C46	C49	H492	58.1	310.8
C49	C46	H461	H462	240.3	239.7
H462	C46	N45	S52	51.0	115.5
N45	C46	H462	C49	120.6	119.1
N45	C46	H462	H461	240.3	239.5
H462	C46	C49	H491	58.2	310.7
H462	C46	C49	H492	298.3	190.3
C49	C46	H462	H461	119.7	120.5
H531	C53	S52	O57	295.3	308.4
H531	C53	S52	O58	64.7	171.6
S52	C53	H531	H532	120.0	120.0
S52	C53	H531	H533	240.0	240.0
H532	C53	H531	H533	120.0	120.0
H532	C53	S52	O57	55.3	68.4
H532	C53	S52	O58	184.7	291.6
S52	C53	H532	H531	240.0	240.0
S52	C53	H532	H533	120.0	120.0
H531	C53	H532	H533	240.0	240.0
H533	C53	S52	O57	175.2	188.4
H533	C53	S52	O58	304.7	51.6
S52	C53	H533	H531	120.1	120.0
S52	C53	H533	H532	240.0	240.0
H531	C53	H533	H532	120.0	120.0