PDB Chemical Component N09
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for N09
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL |
C1 |
1.801 |
1.735 |
| C2 |
C1 |
1.384 |
1.382 |
| C2 |
C3 |
1.393 |
1.382 |
| C1 |
C6 |
1.487 |
1.389 |
| C3 |
C4 |
1.393 |
1.389 |
| C6 |
O1 |
1.368 |
1.359 |
| C6 |
C5 |
1.393 |
1.386 |
| C4 |
C5 |
1.399 |
1.388 |
| C4 |
N1 |
1.368 |
1.400 |
| O1 |
C8 |
1.426 |
1.428 |
| N1 |
C11 |
1.337 |
1.347 |
| C11 |
C13 |
1.507 |
1.507 |
| C11 |
O2 |
1.216 |
1.213 |
| C13 |
N2 |
1.472 |
1.464 |
| N3 |
N2 |
1.413 |
1.407 |
| N3 |
C16 |
1.367 |
1.310 |
| N2 |
C18 |
1.349 |
1.335 |
| C23 |
C24 |
1.391 |
1.380 |
| C23 |
C19 |
1.402 |
1.391 |
| C16 |
C17 |
1.431 |
1.390 |
| C18 |
C19 |
1.402 |
1.464 |
| C18 |
C17 |
1.467 |
1.417 |
| C24 |
C25 |
1.388 |
1.386 |
| C19 |
C20 |
1.404 |
1.410 |
| C17 |
C22 |
1.485 |
1.468 |
| C25 |
C26 |
1.393 |
1.379 |
| C20 |
C26 |
1.396 |
1.389 |
| C20 |
O3 |
1.391 |
1.354 |
| C22 |
O3 |
1.382 |
1.357 |
| C22 |
O4 |
1.258 |
1.216 |
| C16 |
H1 |
1.080 |
1.080 |
| C26 |
H2 |
1.080 |
1.080 |
| C25 |
H3 |
1.080 |
1.080 |
| C24 |
H4 |
1.080 |
1.080 |
| C23 |
H5 |
1.080 |
1.080 |
| C13 |
H6 |
1.100 |
1.090 |
| C13 |
H7 |
1.100 |
1.090 |
| N1 |
H8 |
1.000 |
0.971 |
| C3 |
H9 |
1.080 |
1.080 |
| C2 |
H10 |
1.080 |
1.080 |
| C5 |
H11 |
1.080 |
1.080 |
| C8 |
H12 |
1.100 |
1.090 |
| C8 |
H13 |
1.100 |
1.090 |
| C8 |
H14 |
1.100 |
1.090 |
Bond Angles for N09
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
118.2 |
120.1 |
| C1 |
C2 |
H10 |
120.0 |
120.0 |
| C2 |
C3 |
H9 |
118.6 |
120.0 |
| C1 |
C6 |
O1 |
120.0 |
120.0 |
| C3 |
C4 |
C5 |
118.9 |
120.0 |
| C6 |
O1 |
C8 |
117.4 |
117.0 |
| C6 |
C5 |
H11 |
119.7 |
120.1 |
| C4 |
C5 |
H11 |
119.7 |
120.1 |
| C4 |
N1 |
H8 |
117.5 |
119.9 |
| O1 |
C8 |
H12 |
109.5 |
109.5 |
| O1 |
C8 |
H13 |
109.5 |
109.5 |
| O1 |
C8 |
H14 |
109.4 |
109.5 |
| C11 |
C13 |
H6 |
109.7 |
109.4 |
| C11 |
C13 |
H7 |
109.7 |
109.4 |
| N3 |
N2 |
C18 |
110.4 |
108.2 |
| N3 |
C16 |
H1 |
127.9 |
125.9 |
| C23 |
C24 |
H4 |
120.4 |
120.0 |
| C19 |
C23 |
H5 |
119.5 |
120.2 |
| C24 |
C25 |
H3 |
119.8 |
119.6 |
| C17 |
C22 |
O3 |
118.4 |
116.1 |
| C25 |
C26 |
H2 |
119.5 |
119.8 |
| C20 |
C26 |
H2 |
119.5 |
119.9 |
| H6 |
C13 |
H7 |
109.5 |
109.5 |
| H12 |
C8 |
H13 |
109.5 |
109.5 |
| H12 |
C8 |
H14 |
109.5 |
109.4 |
| H13 |
C8 |
H14 |
109.5 |
109.4 |
Torsion Angles for N09
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL |
C1 |
C2 |
H10 |
0.7 |
360.0 |
| CL |
C1 |
C6 |
O1 |
358.8 |
0.3 |
| C1 |
C2 |
C3 |
H9 |
179.2 |
180.0 |
| C2 |
C1 |
C6 |
O1 |
179.5 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
1.5 |
359.9 |
| C6 |
C1 |
C2 |
H10 |
180.0 |
180.2 |
| C1 |
C6 |
O1 |
C8 |
267.9 |
179.5 |
| C1 |
C6 |
C5 |
H11 |
180.5 |
180.6 |
| C3 |
C4 |
C5 |
H11 |
178.7 |
179.7 |
| C3 |
C4 |
N1 |
H8 |
335.1 |
215.3 |
| O1 |
C6 |
C5 |
H11 |
1.2 |
0.1 |
| C6 |
O1 |
C8 |
H12 |
180.0 |
180.0 |
| C6 |
O1 |
C8 |
H13 |
300.0 |
300.0 |
| C6 |
O1 |
C8 |
H14 |
60.0 |
60.0 |
| C2 |
C1 |
C6 |
C5 |
0.2 |
359.5 |
| C4 |
C5 |
C6 |
H11 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
H11 |
180.0 |
180.1 |
| C5 |
C4 |
N1 |
H8 |
152.8 |
35.1 |
| H12 |
C8 |
O1 |
H13 |
240.0 |
240.0 |
| H12 |
C8 |
O1 |
H14 |
120.0 |
120.0 |
| H13 |
C8 |
O1 |
H14 |
240.0 |
240.0 |
| N1 |
C11 |
C13 |
H6 |
296.5 |
60.0 |
| N1 |
C11 |
C13 |
H7 |
56.8 |
300.0 |
| H6 |
C13 |
C11 |
H7 |
239.7 |
120.0 |
| O2 |
C11 |
C13 |
H6 |
117.4 |
240.0 |
| O2 |
C11 |
C13 |
H7 |
237.7 |
120.0 |
| N2 |
N3 |
C16 |
H1 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
H3 |
181.1 |
180.4 |
| C19 |
C23 |
C24 |
H4 |
179.4 |
180.1 |
| C16 |
C17 |
C22 |
O3 |
180.0 |
158.0 |
| N3 |
N2 |
C18 |
C19 |
180.5 |
179.6 |
| C18 |
C19 |
C23 |
H5 |
0.3 |
357.4 |
| C24 |
C25 |
C26 |
H2 |
179.1 |
179.8 |
| C19 |
C20 |
C26 |
H2 |
180.3 |
179.5 |
| C20 |
C26 |
C25 |
H2 |
180.0 |
180.1 |
| C25 |
C26 |
C20 |
H2 |
180.0 |
179.9 |
| H3 |
C25 |
C26 |
H2 |
359.0 |
359.7 |
| H4 |
C24 |
C25 |
H3 |
1.1 |
0.5 |
| H5 |
C23 |
C24 |
H4 |
359.5 |
0.1 |
| C11 |
C13 |
H6 |
H7 |
120.5 |
240.0 |
| C11 |
C13 |
H7 |
H6 |
239.5 |
120.0 |
| H9 |
C3 |
C4 |
C5 |
181.5 |
179.9 |
| H10 |
C2 |
C1 |
C6 |
180.0 |
180.2 |
| H10 |
C2 |
C3 |
H9 |
359.1 |
0.0 |
| O1 |
C8 |
H12 |
H13 |
120.0 |
120.1 |
| O1 |
C8 |
H12 |
H14 |
240.0 |
240.0 |
| H13 |
C8 |
H12 |
H14 |
120.0 |
119.9 |
| O1 |
C8 |
H13 |
H12 |
239.9 |
239.9 |
| O1 |
C8 |
H13 |
H14 |
120.0 |
120.0 |
| H12 |
C8 |
H13 |
H14 |
240.0 |
240.1 |
| O1 |
C8 |
H14 |
H12 |
120.1 |
120.0 |
| O1 |
C8 |
H14 |
H13 |
240.0 |
240.0 |
| H12 |
C8 |
H14 |
H13 |
120.0 |
119.9 |