PDB Chemical Component N

Ideal Model

Chemical Description

Name ANY 5'-MONOPHOSPHATE NUCLEOTIDE
Synonyms 1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE
Formula C5 H11 O7 P
Formal charge 0
Molecular weight 214.110 g/mol
Component type RNA LINKING

Chemical features

Atom count 24
Chiral atom count 3
Chiral atoms C4' C3' C2'
Observed leaving atoms OP3 HO3'
Bond count 24
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1,4-anhydro-5-O-phosphono-D-ribitol
Systematic name (OpenEye OEToolkits) [(2R,3S,4S)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1CO[C@H](CO[P](O)(O)=O)[C@H]1O
SMILES (CACTVS) O[CH]1CO[CH](CO[P](O)(O)=O)[CH]1O
Stereo SMILES (OpenEye) C1[C@@H]([C@@H]([C@H](O1)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C5H11O7P/c6-3-1-11-4(5(3)7)2-12-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5-/m0/s1
InChIKey descriptor CYZZKTRFOOKUMT-LMVFSUKVSA-N

Status Information

Last modified 2020-06-17
Created 1999-07-13
Release status REL
Replaces ROB
Model PDB code 1G9T
Processing site RCSB