Atom Nomenclature for MYU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MYU

Atom Name (V3) Atom Name (V2)
O20 O20
C11 C11
C12 C12
O19 O19
C10 C10
C13 C13
O21 O21
C9 C9
C16 C16
C15 C15
O22 O22
C14 C14
O23 O23
O8 O8
C7 C7
C6 C6
C5 C5
C4 C4
O17 O17
C3 C3
O18 O18
C2 C2
C1 C1
HO19 HO19
HO21 HO21
H16 H16
HO22 HO22
HO23 HO23
H5 H5
HO17 HO17
HO18 HO18
H2 H2
H1 H1