PDB Chemical Component MYT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MYT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.396 |
1.317 |
N1 |
C6 |
1.426 |
1.320 |
C2 |
C3 |
1.319 |
1.396 |
C2 |
H2 |
1.104 |
1.080 |
C3 |
C4 |
1.355 |
1.403 |
C3 |
C7 |
1.541 |
1.472 |
C4 |
C5 |
1.443 |
1.383 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
C6 |
1.390 |
1.383 |
C5 |
H5 |
1.103 |
1.080 |
C6 |
H6 |
1.103 |
1.080 |
C7 |
O8 |
1.178 |
1.213 |
C7 |
C10 |
1.535 |
1.506 |
C9 |
C10 |
1.585 |
1.530 |
C9 |
H91 |
1.115 |
1.089 |
C9 |
H92 |
1.115 |
1.090 |
C9 |
H93 |
1.115 |
1.090 |
C10 |
C11 |
1.611 |
1.530 |
C10 |
C12 |
1.437 |
1.506 |
C11 |
H111 |
1.115 |
1.090 |
C11 |
H112 |
1.115 |
1.090 |
C11 |
H113 |
1.114 |
1.090 |
C12 |
C13 |
1.383 |
1.380 |
C12 |
C17 |
1.386 |
1.387 |
C13 |
N14 |
1.378 |
1.319 |
C13 |
H13 |
1.104 |
1.080 |
N14 |
C15 |
1.387 |
1.318 |
C15 |
C16 |
1.403 |
1.381 |
C15 |
H15 |
1.103 |
1.080 |
C16 |
C17 |
1.398 |
1.387 |
C16 |
H16 |
1.102 |
1.080 |
C17 |
H17 |
1.102 |
1.080 |
Bond Angles for MYT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
113.9 |
121.9 |
N1 |
C2 |
C3 |
122.0 |
120.5 |
N1 |
C2 |
H2 |
121.9 |
119.7 |
N1 |
C6 |
C5 |
125.9 |
121.1 |
N1 |
C6 |
H6 |
118.5 |
119.5 |
C3 |
C2 |
H2 |
116.1 |
119.8 |
C2 |
C3 |
C4 |
124.5 |
118.8 |
C2 |
C3 |
C7 |
118.0 |
120.6 |
C4 |
C3 |
C7 |
117.2 |
120.6 |
C3 |
C4 |
C5 |
118.9 |
118.3 |
C3 |
C4 |
H4 |
117.5 |
120.9 |
C3 |
C7 |
O8 |
117.3 |
120.0 |
C3 |
C7 |
C10 |
114.9 |
120.0 |
C5 |
C4 |
H4 |
123.6 |
120.8 |
C4 |
C5 |
C6 |
114.4 |
119.3 |
C4 |
C5 |
H5 |
124.5 |
120.3 |
C6 |
C5 |
H5 |
121.1 |
120.4 |
C5 |
C6 |
H6 |
115.7 |
119.4 |
O8 |
C7 |
C10 |
127.7 |
120.0 |
C7 |
C10 |
C9 |
105.6 |
109.4 |
C7 |
C10 |
C11 |
108.0 |
109.5 |
C7 |
C10 |
C12 |
116.1 |
109.5 |
C10 |
C9 |
H91 |
105.7 |
109.5 |
C10 |
C9 |
H92 |
113.7 |
109.5 |
C10 |
C9 |
H93 |
113.7 |
109.5 |
C9 |
C10 |
C11 |
97.3 |
109.5 |
C9 |
C10 |
C12 |
119.2 |
109.5 |
H91 |
C9 |
H92 |
113.7 |
109.4 |
H91 |
C9 |
H93 |
113.5 |
109.5 |
H92 |
C9 |
H93 |
96.8 |
109.5 |
C11 |
C10 |
C12 |
108.6 |
109.5 |
C10 |
C11 |
H111 |
108.0 |
109.5 |
C10 |
C11 |
H112 |
112.8 |
109.5 |
C10 |
C11 |
H113 |
112.8 |
109.5 |
C10 |
C12 |
C13 |
121.6 |
120.5 |
C10 |
C12 |
C17 |
123.2 |
120.4 |
H111 |
C11 |
H112 |
112.7 |
109.5 |
H111 |
C11 |
H113 |
112.8 |
109.4 |
H112 |
C11 |
H113 |
97.7 |
109.5 |
C13 |
C12 |
C17 |
114.9 |
119.2 |
C12 |
C13 |
N14 |
124.3 |
120.8 |
C12 |
C13 |
H13 |
118.0 |
119.6 |
C12 |
C17 |
C16 |
124.7 |
118.4 |
C12 |
C17 |
H17 |
117.1 |
120.9 |
N14 |
C13 |
H13 |
117.6 |
119.6 |
C13 |
N14 |
C15 |
118.3 |
121.7 |
N14 |
C15 |
C16 |
121.2 |
120.8 |
N14 |
C15 |
H15 |
118.8 |
119.6 |
C16 |
C15 |
H15 |
120.0 |
119.6 |
C15 |
C16 |
C17 |
116.5 |
119.1 |
C15 |
C16 |
H16 |
121.9 |
120.4 |
C17 |
C16 |
H16 |
121.6 |
120.4 |
C16 |
C17 |
H17 |
118.2 |
120.8 |
Torsion Angles for MYT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
C5 |
0.3 |
359.6 |
C2 |
N1 |
C6 |
H6 |
180.3 |
179.7 |
C3 |
C2 |
N1 |
H2 |
180.0 |
180.6 |
N1 |
C2 |
C3 |
C4 |
358.2 |
359.3 |
N1 |
C2 |
C3 |
C7 |
172.4 |
179.7 |
C6 |
N1 |
C2 |
C3 |
358.0 |
0.7 |
C6 |
N1 |
C2 |
H2 |
178.0 |
180.0 |
C4 |
C5 |
C6 |
N1 |
4.6 |
0.1 |
N1 |
C6 |
C5 |
H5 |
184.7 |
180.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
179.9 |
C3 |
C2 |
N1 |
C6 |
358.0 |
0.7 |
N1 |
C2 |
C3 |
H2 |
180.0 |
179.4 |
C4 |
C3 |
C2 |
C7 |
185.8 |
179.6 |
C2 |
C3 |
C4 |
C5 |
7.2 |
0.4 |
C2 |
C3 |
C4 |
H4 |
187.2 |
180.2 |
C2 |
C3 |
C7 |
O8 |
65.2 |
173.1 |
C2 |
C3 |
C7 |
C10 |
241.8 |
353.1 |
H2 |
C2 |
N1 |
C6 |
178.0 |
180.0 |
N1 |
C2 |
H2 |
C3 |
180.0 |
180.6 |
H2 |
C2 |
C3 |
C4 |
178.2 |
180.0 |
H2 |
C2 |
C3 |
C7 |
352.4 |
0.3 |
C4 |
C3 |
C2 |
H2 |
178.2 |
180.0 |
C2 |
C3 |
C4 |
C7 |
174.2 |
180.4 |
C4 |
C3 |
C7 |
O8 |
239.8 |
353.5 |
C4 |
C3 |
C7 |
C10 |
56.5 |
173.4 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
C3 |
C4 |
C5 |
C6 |
351.9 |
359.9 |
C3 |
C4 |
C5 |
H5 |
171.9 |
180.0 |
C7 |
C3 |
C2 |
H2 |
352.4 |
0.3 |
C2 |
C3 |
C7 |
C4 |
185.4 |
179.6 |
C7 |
C3 |
C4 |
C5 |
192.9 |
180.0 |
C7 |
C3 |
C4 |
H4 |
12.9 |
359.9 |
O8 |
C7 |
C3 |
C10 |
183.4 |
180.0 |
C3 |
C7 |
C10 |
C9 |
58.9 |
302.6 |
C3 |
C7 |
C10 |
C11 |
162.2 |
182.6 |
C3 |
C7 |
C10 |
C12 |
284.4 |
62.6 |
N1 |
C6 |
C5 |
C4 |
4.6 |
0.1 |
C5 |
C4 |
C3 |
C7 |
192.9 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
H5 |
180.1 |
179.9 |
C4 |
C5 |
C6 |
H6 |
184.6 |
180.0 |
H4 |
C4 |
C3 |
C7 |
12.9 |
359.9 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.1 |
H4 |
C4 |
C5 |
C6 |
171.9 |
180.0 |
H4 |
C4 |
C5 |
H5 |
351.9 |
0.1 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
C6 |
C5 |
C4 |
H4 |
171.9 |
180.0 |
C4 |
C5 |
C6 |
H5 |
179.9 |
180.1 |
H5 |
C5 |
C4 |
H4 |
351.9 |
0.1 |
C4 |
C5 |
H5 |
C6 |
180.1 |
179.9 |
H5 |
C5 |
C6 |
H6 |
4.7 |
359.9 |
N1 |
C6 |
H6 |
C5 |
180.0 |
179.9 |
H6 |
C6 |
C5 |
H5 |
4.7 |
359.9 |
C3 |
C7 |
O8 |
C10 |
176.1 |
180.0 |
O8 |
C7 |
C10 |
C9 |
235.1 |
122.6 |
O8 |
C7 |
C10 |
C11 |
338.4 |
2.6 |
O8 |
C7 |
C10 |
C12 |
100.6 |
242.6 |
C3 |
C7 |
C10 |
O8 |
183.8 |
180.0 |
C7 |
C10 |
C9 |
H91 |
180.0 |
53.4 |
C7 |
C10 |
C9 |
H92 |
305.3 |
173.3 |
C7 |
C10 |
C9 |
H93 |
54.8 |
293.3 |
C9 |
C10 |
C7 |
C11 |
256.7 |
120.0 |
C9 |
C10 |
C7 |
C12 |
134.5 |
240.0 |
C11 |
C10 |
C7 |
C12 |
237.8 |
120.0 |
C7 |
C10 |
C11 |
H111 |
180.1 |
304.2 |
C7 |
C10 |
C11 |
H112 |
305.3 |
64.2 |
C7 |
C10 |
C11 |
H113 |
54.7 |
184.2 |
C7 |
C10 |
C12 |
C13 |
129.0 |
7.4 |
C7 |
C10 |
C12 |
C17 |
315.5 |
187.7 |
C7 |
C10 |
C9 |
C11 |
111.0 |
240.1 |
C7 |
C10 |
C9 |
C12 |
227.1 |
120.0 |
H91 |
C9 |
C10 |
H92 |
234.7 |
240.1 |
H91 |
C9 |
C10 |
H93 |
125.2 |
120.1 |
H92 |
C9 |
C10 |
H93 |
250.5 |
240.0 |
C11 |
C10 |
C9 |
C12 |
116.1 |
240.0 |
C9 |
C10 |
C11 |
H111 |
289.1 |
184.2 |
C9 |
C10 |
C11 |
H112 |
54.3 |
304.2 |
C9 |
C10 |
C11 |
H113 |
163.8 |
64.3 |
C9 |
C10 |
C12 |
C13 |
0.8 |
127.4 |
C9 |
C10 |
C12 |
C17 |
187.3 |
307.6 |
C10 |
C9 |
H91 |
H92 |
125.3 |
120.0 |
C10 |
C9 |
H91 |
H93 |
234.7 |
239.9 |
H91 |
C9 |
C10 |
C11 |
68.9 |
173.4 |
H91 |
C9 |
C10 |
C12 |
312.8 |
293.4 |
H92 |
C9 |
H91 |
H93 |
109.4 |
120.0 |
C10 |
C9 |
H92 |
H91 |
239.1 |
240.0 |
C10 |
C9 |
H92 |
H93 |
119.6 |
120.0 |
H92 |
C9 |
C10 |
C11 |
194.2 |
293.3 |
H92 |
C9 |
C10 |
C12 |
78.1 |
53.3 |
H91 |
C9 |
H92 |
H93 |
240.5 |
240.0 |
C10 |
C9 |
H93 |
H91 |
120.8 |
120.1 |
C10 |
C9 |
H93 |
H92 |
240.4 |
240.0 |
H93 |
C9 |
C10 |
C11 |
303.7 |
53.3 |
H93 |
C9 |
C10 |
C12 |
187.6 |
173.3 |
H91 |
C9 |
H93 |
H92 |
119.5 |
119.9 |
C7 |
C10 |
C11 |
C9 |
250.9 |
119.9 |
C7 |
C10 |
C11 |
C12 |
126.7 |
240.0 |
C11 |
C10 |
C9 |
H91 |
68.9 |
173.4 |
C11 |
C10 |
C9 |
H92 |
194.2 |
293.3 |
C11 |
C10 |
C9 |
H93 |
303.7 |
53.3 |
C9 |
C10 |
C11 |
C12 |
235.8 |
120.1 |
C11 |
C10 |
C12 |
C13 |
250.9 |
247.4 |
C11 |
C10 |
C12 |
C17 |
77.4 |
67.7 |
H111 |
C11 |
C10 |
H112 |
234.8 |
240.0 |
H111 |
C11 |
C10 |
H113 |
125.3 |
120.0 |
H112 |
C11 |
C10 |
H113 |
250.5 |
240.0 |
C7 |
C10 |
C12 |
C9 |
128.1 |
240.0 |
C7 |
C10 |
C12 |
C11 |
238.1 |
120.0 |
C12 |
C10 |
C9 |
H91 |
312.8 |
293.4 |
C12 |
C10 |
C9 |
H92 |
78.1 |
53.3 |
C12 |
C10 |
C9 |
H93 |
187.6 |
173.3 |
C9 |
C10 |
C12 |
C11 |
110.0 |
240.0 |
C12 |
C10 |
C11 |
H111 |
53.3 |
64.2 |
C12 |
C10 |
C11 |
H112 |
178.5 |
184.1 |
C12 |
C10 |
C11 |
H113 |
288.0 |
304.2 |
C13 |
C12 |
C10 |
C17 |
173.5 |
179.7 |
C10 |
C12 |
C13 |
N14 |
185.6 |
179.7 |
C10 |
C12 |
C13 |
H13 |
5.6 |
0.3 |
C10 |
C12 |
C17 |
C16 |
176.2 |
180.0 |
C10 |
C12 |
C17 |
H17 |
356.2 |
0.1 |
H111 |
C11 |
C10 |
C12 |
53.3 |
64.2 |
C10 |
C11 |
H111 |
H112 |
125.3 |
120.0 |
C10 |
C11 |
H111 |
H113 |
234.7 |
240.0 |
H112 |
C11 |
H111 |
H113 |
109.4 |
120.0 |
H112 |
C11 |
C10 |
C12 |
178.5 |
184.1 |
C10 |
C11 |
H112 |
H111 |
237.4 |
240.0 |
C10 |
C11 |
H112 |
H113 |
118.7 |
120.0 |
H111 |
C11 |
H112 |
H113 |
241.4 |
240.0 |
H113 |
C11 |
C10 |
C12 |
288.0 |
304.2 |
C10 |
C11 |
H113 |
H111 |
122.7 |
120.0 |
C10 |
C11 |
H113 |
H112 |
241.3 |
240.0 |
H111 |
C11 |
H113 |
H112 |
118.6 |
120.0 |
C10 |
C12 |
C13 |
C17 |
186.0 |
180.3 |
C13 |
C12 |
C17 |
C16 |
2.3 |
0.2 |
C13 |
C12 |
C17 |
H17 |
182.3 |
180.3 |
N14 |
C13 |
C12 |
H13 |
180.0 |
179.4 |
C12 |
C13 |
N14 |
C15 |
358.6 |
0.6 |
C10 |
C12 |
C17 |
C13 |
173.9 |
179.7 |
C17 |
C12 |
C13 |
N14 |
359.6 |
359.4 |
C17 |
C12 |
C13 |
H13 |
179.6 |
180.0 |
C15 |
C16 |
C17 |
C12 |
357.7 |
0.0 |
C12 |
C17 |
C16 |
H16 |
177.7 |
180.0 |
C16 |
C17 |
C12 |
H17 |
180.0 |
179.9 |
N14 |
C13 |
C12 |
C17 |
359.6 |
359.4 |
C12 |
C13 |
N14 |
H13 |
180.0 |
180.6 |
C13 |
N14 |
C15 |
C16 |
1.4 |
359.7 |
C13 |
N14 |
C15 |
H15 |
181.4 |
179.7 |
H13 |
C13 |
C12 |
C17 |
179.6 |
180.0 |
C12 |
C13 |
H13 |
N14 |
180.0 |
179.4 |
H13 |
C13 |
N14 |
C15 |
178.6 |
180.0 |
C15 |
N14 |
C13 |
H13 |
178.6 |
180.0 |
C16 |
C15 |
N14 |
H15 |
179.9 |
180.0 |
N14 |
C15 |
C16 |
C17 |
0.3 |
360.0 |
N14 |
C15 |
C16 |
H16 |
180.4 |
180.0 |
C12 |
C17 |
C16 |
C15 |
357.7 |
0.0 |
N14 |
C15 |
C16 |
H15 |
180.1 |
180.0 |
C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
H17 |
177.7 |
180.0 |
N14 |
C15 |
H15 |
C16 |
180.0 |
180.0 |
H15 |
C15 |
C16 |
C17 |
180.3 |
180.0 |
H15 |
C15 |
C16 |
H16 |
0.3 |
360.0 |
C12 |
C17 |
C16 |
H17 |
180.0 |
180.1 |
C17 |
C16 |
C15 |
H15 |
180.3 |
180.0 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
H16 |
C16 |
C15 |
H15 |
0.3 |
360.0 |
C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
H16 |
C16 |
C17 |
H17 |
357.7 |
360.0 |
C12 |
C17 |
H17 |
C16 |
180.0 |
179.9 |
H17 |
C17 |
C16 |
H16 |
357.7 |
360.0 |