Atom Nomenclature for MYR

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MYR

Atom Name (V3) Atom Name (V2)
C1 C1
O1 O1
O2 O2
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
HO2 HO2
H21 H21
H22 H22
H31 H31
H32 H32
H41 H41
H42 H42
H51 H51
H52 H52
H61 H61
H62 H62
H71 H71
H72 H72
H81 H81
H82 H82
H91 H91
H92 H92
H101 H101
H102 H102
H111 H111
H112 H112
H121 H121
H122 H122
H131 H131
H132 H132
H141 H141
H142 H142
H143 H143