Atom Nomenclature for MYF

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MYF

Atom Name (V3) Atom Name (V2)
O22 O22
C7 C7
C6 C6
C1 C1
O21 O21
C2 C2
C3 C3
O20 O20
C5 C5
C4 C4
O10 O10
C9 C9
C8 C8
C11 C11
C12 C12
C13 C13
O19 O19
C14 C14
O18 O18
C15 C15
C16 C16
O17 O17
HO21 HO21
H2 H2
HO20 HO20
H4 H4
H8 H8
H12 H12
HO19 HO19
HO18 HO18
H16 H16
HO17 HO17