Atom Nomenclature for MYE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MYE

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
C4 C4
C5 C5
N6 N6
C7 C7
O8 O8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
N14 N14
C15 C15
O16 O16
O17 O17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
BR2 BR2
C24 C24
C25 C25
C26 C26
O27 O27
C1 C1
H21A 1H2
H22 2H2
H31 1H3
H32 2H3
H41 1H4
H42 2H4
H5 H5
HN6 HN6
H9 H9
H101 1H10
H102 2H10
H11 H11
H121 1H12
H122 2H12
H123 3H12
H131 1H13
H132 2H13
H133 3H13
H14 H14
H181 1H18
H182 2H18
H20 H20
H21 H21
H24 H24
H25 H25
H26 H26
H11A 1H1
H12 2H1
H13 3H1