PDB Chemical Component MXY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MXY

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.551	1.529
C1	O5	1.457	1.425
C1	O1	1.450	1.429
C1	H1	1.115	1.090
C2	C3	1.536	1.533
C2	O2	1.428	1.428
C2	H2	1.114	1.090
C3	C4	1.546	1.533
C3	O3	1.432	1.429
C3	H3	1.115	1.090
C4	C5	1.556	1.529
C4	O4	1.428	1.429
C4	H4	1.115	1.090
C5	O5	1.474	1.426
C5	C6	1.523	1.530
C5	H5	1.116	1.090
O2	CM	1.435	1.429
O3	HO3	0.950	0.966
O4	HO4	0.950	0.967
CM	HCM1	1.116	1.090
CM	HCM2	1.114	1.090
CM	HCM3	1.115	1.090
C6	H61	1.116	1.090
C6	H62	1.114	1.089
C6	H63	1.115	1.090
O1	HO1	0.950	0.967

Bond Angles for MXY

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O5	110.4	109.8
C2	C1	O1	119.6	109.4
C2	C1	H1	106.9	109.4
C1	C2	C3	109.4	109.1
C1	C2	O2	109.5	109.6
C1	C2	H2	109.7	109.5
O5	C1	O1	120.7	109.4
O5	C1	H1	105.1	109.4
C1	O5	C5	114.4	107.6
O1	C1	H1	89.4	109.3
C1	O1	HO1	119.6	106.9
C3	C2	O2	110.1	109.6
C3	C2	H2	109.1	109.5
C2	C3	C4	108.3	108.6
C2	C3	O3	109.9	109.9
C2	C3	H3	110.2	109.5
O2	C2	H2	109.0	109.5
C2	O2	CM	110.1	106.9
C4	C3	O3	109.9	109.6
C4	C3	H3	110.1	109.6
C3	C4	C5	109.4	109.1
C3	C4	O4	109.0	109.5
C3	C4	H4	110.2	109.5
O3	C3	H3	108.5	109.7
C3	O3	HO3	109.9	106.8
C5	C4	O4	110.4	109.6
C5	C4	H4	108.7	109.6
C4	C5	O5	110.3	109.8
C4	C5	C6	113.2	109.4
C4	C5	H5	106.0	109.5
O4	C4	H4	109.2	109.5
C4	O4	HO4	109.0	106.8
O5	C5	C6	108.7	109.4
O5	C5	H5	110.8	109.4
C6	C5	H5	107.8	109.4
C5	C6	H61	113.2	109.5
C5	C6	H62	110.8	109.5
C5	C6	H63	110.8	109.5
O2	CM	HCM1	110.1	109.5
O2	CM	HCM2	111.9	109.5
O2	CM	HCM3	111.9	109.4
HCM1	CM	HCM2	111.9	109.5
HCM1	CM	HCM3	112.0	109.4
HCM2	CM	HCM3	98.5	109.4
H61	C6	H62	110.8	109.5
H61	C6	H63	110.8	109.5
H62	C6	H63	99.5	109.5

Torsion Angles for MXY

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C1	C2	O1	146.9	120.1
O5	C1	C2	H1	246.2	239.9
C2	C1	O5	C5	56.7	67.5
O1	C1	C2	H1	99.3	119.8
C2	C1	O1	HO1	180.1	180.0
C3	C2	C1	O2	120.8	120.0
C3	C2	C1	H2	240.4	240.1
C1	C2	C3	C4	59.9	53.5
C1	C2	C3	O3	180.0	173.4
C1	C2	C3	H3	299.5	293.9
O2	C2	C1	H2	119.6	120.2
C1	C2	O2	CM	246.3	269.8
C2	C1	O5	O1	213.5	239.9
C2	C1	O5	H1	114.9	120.1
O5	C1	C2	C3	302.0	298.8
O5	C1	C2	O2	181.2	178.9
O5	C1	C2	H2	61.6	58.7
O1	C1	O5	H1	261.4	240.3
O5	C1	O1	HO1	36.6	59.6
C4	C5	O5	C1	303.9	292.4
C1	O5	C5	C6	179.3	172.4
C1	O5	C5	H5	61.0	52.6
C2	C1	O1	O5	143.5	120.4
C2	C1	O1	H1	250.8	240.2
O1	C1	C2	C3	155.1	178.7
O1	C1	C2	O2	34.3	58.8
O1	C1	C2	H2	274.7	298.6
O5	C1	O1	H1	107.3	119.8
O1	C1	O5	C5	203.2	187.7
C2	C1	H1	O5	242.7	239.6
C2	C1	H1	O1	120.9	119.9
H1	C1	C2	C3	55.8	58.9
H1	C1	C2	O2	295.0	299.0
H1	C1	C2	H2	175.5	178.8
O5	C1	H1	O1	238.2	240.2
H1	C1	O5	C5	301.8	307.4
H1	C1	O1	HO1	289.3	299.8
C3	C2	C1	O5	302.0	298.8
C3	C2	C1	O1	155.1	178.7
C3	C2	C1	H1	55.8	58.9
C1	C2	C3	O2	239.6	240.0
C1	C2	C3	H2	120.0	119.9
O2	C2	C3	H2	240.5	239.9
C3	C2	O2	CM	125.9	150.1
C4	C3	C2	O3	239.9	240.1
C4	C3	C2	H3	120.5	119.6
C2	C3	C4	C5	300.7	306.5
C2	C3	C4	O4	61.6	66.4
C2	C3	C4	H4	181.3	186.5
O3	C3	C2	H3	240.5	239.5
C2	C3	O3	HO3	179.9	180.6
O2	C2	C1	O5	181.2	178.9
O2	C2	C1	O1	34.3	58.8
O2	C2	C1	H1	295.0	299.0
C1	C2	O2	C3	120.3	119.7
C1	C2	O2	H2	240.0	239.8
C3	C2	O2	H2	119.6	120.1
O2	C2	C3	C4	180.3	173.5
O2	C2	C3	O3	300.4	293.4
O2	C2	C3	H3	59.9	53.9
C2	O2	CM	HCM1	180.0	180.0
C2	O2	CM	HCM2	305.2	300.1
C2	O2	CM	HCM3	54.8	60.0
H2	C2	C1	O5	61.6	58.7
H2	C2	C1	O1	274.7	298.6
H2	C2	C1	H1	175.5	178.8
C1	C2	H2	C3	240.2	240.4
C1	C2	H2	O2	119.9	120.2
C3	C2	H2	O2	239.7	239.8
H2	C2	C3	C4	299.9	293.6
H2	C2	C3	O3	59.9	53.5
H2	C2	C3	H3	179.4	174.0
H2	C2	O2	CM	6.3	30.0
C4	C3	C2	O2	180.3	173.5
C4	C3	C2	H2	299.9	293.6
C2	C3	C4	O3	120.0	120.1
C2	C3	C4	H3	239.5	240.5
O3	C3	C4	H3	119.5	120.4
C4	C3	O3	HO3	299.0	299.9
C5	C4	C3	O4	239.2	240.0
C5	C4	C3	H4	119.4	119.9
C3	C4	C5	O5	56.4	61.2
C3	C4	C5	C6	178.4	181.3
C3	C4	C5	H5	296.3	301.1
O4	C4	C3	H4	240.2	239.9
C3	C4	O4	HO4	180.0	180.3
O3	C3	C2	O2	300.4	293.4
O3	C3	C2	H2	59.9	53.5
C2	C3	O3	C4	241.0	240.7
C2	C3	O3	H3	120.5	120.4
C4	C3	O3	H3	239.5	239.7
O3	C3	C4	C5	180.7	186.4
O3	C3	C4	O4	301.5	306.3
O3	C3	C4	H4	61.3	66.4
H3	C3	C2	O2	59.9	53.9
H3	C3	C2	H2	179.4	174.0
C2	C3	H3	C4	119.3	119.0
C2	C3	H3	O3	239.7	239.3
C4	C3	H3	O3	120.4	120.3
H3	C3	C4	C5	61.2	66.0
H3	C3	C4	O4	182.1	186.0
H3	C3	C4	H4	301.8	306.1
H3	C3	O3	HO3	59.4	60.2
C1	O5	C5	C4	303.9	292.4
C5	C4	C3	O3	180.7	186.4
C5	C4	C3	H3	61.2	66.0
C3	C4	C5	O4	120.0	119.9
C3	C4	C5	H4	239.7	240.1
O4	C4	C5	H4	119.7	120.2
C5	C4	O4	HO4	300.2	300.0
O5	C5	C4	C6	238.0	239.9
O5	C5	C4	H5	120.0	120.1
C6	C5	C4	H5	242.0	240.1
C4	C5	C6	H61	180.0	179.7
C4	C5	C6	H62	305.3	299.7
C4	C5	C6	H63	54.8	59.7
O4	C4	C3	O3	301.5	306.3
O4	C4	C3	H3	182.1	186.0
C3	C4	O4	C5	239.8	240.3
C3	C4	O4	H4	120.4	120.1
C5	C4	O4	H4	240.6	239.8
O4	C4	C5	O5	296.4	301.3
O4	C4	C5	C6	58.4	61.4
O4	C4	C5	H5	176.4	181.2
H4	C4	C3	O3	61.3	66.4
H4	C4	C3	H3	301.8	306.1
C3	C4	H4	C5	119.8	119.7
C3	C4	H4	O4	240.3	239.9
C5	C4	H4	O4	120.5	120.2
H4	C4	C5	O5	176.7	181.1
H4	C4	C5	C6	298.7	301.2
H4	C4	C5	H5	56.7	61.0
H4	C4	O4	HO4	59.6	60.2
C5	O5	C1	O1	203.2	187.7
C5	O5	C1	H1	301.8	307.4
O5	C5	C4	O4	296.4	301.3
O5	C5	C4	H4	176.7	181.1
C4	C5	O5	C6	124.6	120.0
C4	C5	O5	H5	242.9	239.9
C6	C5	O5	H5	118.2	119.8
O5	C5	C6	H61	302.9	300.0
O5	C5	C6	H62	68.1	60.0
O5	C5	C6	H63	177.7	180.0
C6	C5	C4	O4	58.4	61.4
C6	C5	C4	H4	298.7	301.2
C4	C5	C6	O5	237.1	239.7
C4	C5	C6	H5	117.0	119.9
O5	C5	C6	H5	239.8	240.2
H61	C6	C5	H62	234.7	240.0
H61	C6	C5	H63	125.2	120.0
H62	C6	C5	H63	250.5	240.0
H5	C5	C4	O4	176.4	181.2
H5	C5	C4	H4	56.7	61.0
C4	C5	H5	O5	119.7	120.4
C4	C5	H5	C6	238.5	240.2
O5	C5	H5	C6	118.8	119.8
H5	C5	C6	H61	63.0	59.8
H5	C5	C6	H62	188.3	179.8
H5	C5	C6	H63	297.8	299.8
CM	O2	C2	H2	6.3	30.0
HCM1	CM	O2	HCM2	234.8	239.9
HCM1	CM	O2	HCM3	125.3	120.0
HCM2	CM	O2	HCM3	250.5	240.1
HO3	O3	C3	H3	59.4	60.2
HO4	O4	C4	H4	59.6	60.2
O2	CM	HCM1	HCM2	125.2	120.1
O2	CM	HCM1	HCM3	234.8	240.1
HCM2	CM	HCM1	HCM3	109.6	120.0
O2	CM	HCM2	HCM1	235.8	239.9
O2	CM	HCM2	HCM3	117.9	119.9
HCM1	CM	HCM2	HCM3	242.1	240.0
O2	CM	HCM3	HCM1	124.2	120.0
O2	CM	HCM3	HCM2	242.1	240.0
HCM1	CM	HCM3	HCM2	117.9	120.0
H61	C6	C5	H5	63.0	59.8
C5	C6	H61	H62	125.3	120.0
C5	C6	H61	H63	234.8	240.0
H62	C6	H61	H63	109.5	120.0
H62	C6	C5	H5	188.3	179.8
C5	C6	H62	H61	233.4	240.0
C5	C6	H62	H63	116.7	120.0
H61	C6	H62	H63	243.3	240.0
H63	C6	C5	H5	297.8	299.8
C5	C6	H63	H61	126.5	120.0
C5	C6	H63	H62	243.3	240.0
H61	C6	H63	H62	116.7	120.0
HO1	O1	C1	H1	289.3	299.8