PDB Chemical Component MXA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MXA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.317 1.320
N1 C8A 1.364 1.340
C2 N2 1.345 1.382
C2 N3 1.325 1.329
N2 HN21 1.020 0.969
N2 HN22 1.019 0.971
N3 C4 1.309 1.325
C4 N4 1.361 1.378
C4 C4A 1.441 1.416
N4 HN41 1.020 0.970
N4 HN42 1.020 0.970
C4A C5 1.397 1.400
C4A C8A 1.426 1.416
C5 C5M 1.508 1.507
C5 C6 1.369 1.370
C5M H5M1 1.114 1.090
C5M H5M2 1.116 1.090
C5M H5M3 1.116 1.089
C6 C7 1.402 1.389
C6 C9 1.524 1.506
C7 N8 1.327 1.314
C7 H7 1.102 1.081
N8 C8A 1.345 1.333
C9 C1' 1.497 1.508
C9 H91 1.114 1.091
C9 H92 1.115 1.089
C1' C2' 1.384 1.386
C1' C6' 1.364 1.380
C2' O2' 1.378 1.361
C2' C3' 1.386 1.386
O2' C21 1.414 1.428
C21 H211 1.116 1.090
C21 H212 1.115 1.090
C21 H213 1.115 1.090
C3' C4' 1.394 1.380
C3' H3' 1.102 1.081
C4' C5' 1.371 1.388
C4' H4' 1.103 1.079
C5' O5' 1.421 1.360
C5' C6' 1.372 1.386
O5' C51 1.437 1.429
C51 H511 1.114 1.090
C51 H512 1.114 1.090
C51 H513 1.115 1.090
C6' H6' 1.102 1.080

Bond Angles for MXA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 115.3 120.6
N1 C2 N2 119.9 118.6
N1 C2 N3 126.5 122.8
N1 C8A C4A 123.2 118.5
N1 C8A N8 114.3 121.7
N2 C2 N3 113.6 118.5
C2 N2 HN21 119.9 120.0
C2 N2 HN22 108.5 119.9
C2 N3 C4 120.4 121.3
HN21 N2 HN22 108.4 120.0
N3 C4 N4 117.6 120.9
N3 C4 C4A 120.3 118.3
N4 C4 C4A 122.1 120.8
C4 N4 HN41 117.6 119.9
C4 N4 HN42 109.4 120.1
C4 C4A C5 127.0 122.1
C4 C4A C8A 114.3 118.5
HN41 N4 HN42 109.2 120.0
C5 C4A C8A 118.8 119.3
C4A C5 C5M 121.6 121.0
C4A C5 C6 118.1 118.0
C4A C8A N8 122.4 119.8
C5M C5 C6 120.3 121.0
C5 C5M H5M1 121.7 109.4
C5 C5M H5M2 107.9 109.5
C5 C5M H5M3 107.9 109.5
C5 C6 C7 119.4 119.8
C5 C6 C9 119.9 120.0
H5M1 C5M H5M2 107.9 109.5
H5M1 C5M H5M3 107.9 109.5
H5M2 C5M H5M3 101.9 109.4
C7 C6 C9 120.6 120.1
C6 C7 N8 124.2 121.8
C6 C7 H7 120.8 119.1
C6 C9 C1' 113.7 109.5
C6 C9 H91 110.7 109.4
C6 C9 H92 110.6 109.5
N8 C7 H7 115.0 119.1
C7 N8 C8A 117.1 121.2
C1' C9 H91 110.7 109.4
C1' C9 H92 110.7 109.5
C9 C1' C2' 120.3 120.0
C9 C1' C6' 118.2 120.0
H91 C9 H92 99.6 109.4
C2' C1' C6' 121.5 120.0
C1' C2' O2' 113.1 120.0
C1' C2' C3' 118.4 120.0
C1' C6' C5' 119.0 120.0
C1' C6' H6' 120.2 120.0
O2' C2' C3' 128.4 120.0
C2' O2' C21 121.0 106.8
C2' C3' C4' 120.8 120.0
C2' C3' H3' 119.3 120.0
O2' C21 H211 121.0 109.5
O2' C21 H212 108.1 109.4
O2' C21 H213 108.1 109.5
H211 C21 H212 108.0 109.5
H211 C21 H213 108.1 109.5
H212 C21 H213 101.8 109.4
C4' C3' H3' 119.9 120.0
C3' C4' C5' 118.3 120.0
C3' C4' H4' 121.6 120.1
C5' C4' H4' 120.1 120.0
C4' C5' O5' 127.9 120.0
C4' C5' C6' 121.9 120.0
O5' C5' C6' 110.2 120.0
C5' O5' C51 105.8 106.8
C5' C6' H6' 120.8 120.0
O5' C51 H511 105.8 109.5
O5' C51 H512 113.6 109.5
O5' C51 H513 113.6 109.4
H511 C51 H512 113.6 109.5
H511 C51 H513 113.6 109.5
H512 C51 H513 96.9 109.5

Torsion Angles for MXA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A C4A 1.2 360.0
C2 N1 C8A N8 183.2 180.1
N2 C2 N1 N3 180.8 180.1
N1 C2 N2 HN21 180.0 180.0
N1 C2 N2 HN22 54.8 360.0
N1 C2 N3 C4 0.9 0.1
C8A N1 C2 N2 179.1 180.0
C8A N1 C2 N3 358.3 359.9
C4 C4A C8A N1 360.0 0.1
C5 C4A C8A N1 180.4 179.8
C4A C8A N1 N8 177.9 179.9
C7 N8 C8A N1 181.5 180.0
N2 C2 N1 C8A 179.1 180.0
N1 C2 N2 N3 179.3 179.9
N2 C2 N3 C4 180.1 180.0
HN21 N2 C2 HN22 125.2 180.0
N3 C2 N1 C8A 358.3 359.9
N1 C2 N3 N2 180.8 180.1
N3 C2 N2 HN21 0.7 0.1
N3 C2 N2 HN22 235.5 180.0
C2 N3 C4 N4 179.8 180.0
C2 N3 C4 C4A 0.5 360.0
HN21 N2 C2 N3 0.7 0.1
C2 N2 HN21 HN22 234.8 180.0
HN22 N2 C2 N3 235.5 180.0
C2 N2 HN22 HN21 131.7 180.0
N4 C4 N3 C4A 179.3 180.0
N3 C4 N4 HN41 180.0 42.7
N3 C4 N4 HN42 54.7 222.7
N3 C4 C4A C5 178.6 180.3
N3 C4 C4A C8A 359.1 360.0
N3 C4 N4 C4A 180.7 180.0
N4 C4 C4A C5 359.3 0.3
N4 C4 C4A C8A 179.8 180.0
HN41 N4 C4 HN42 125.2 179.9
N1 C8A C4A C4 360.0 0.1
N3 C4 C4A N4 179.3 180.0
C4A C4 N4 HN41 359.3 222.7
C4A C4 N4 HN42 234.1 42.8
C5 C4A C4 C8A 179.5 180.3
C4 C4A C5 C5M 358.9 360.0
C4 C4A C5 C6 179.7 180.2
C4 C4A C8A N8 177.8 180.0
HN41 N4 C4 C4A 359.3 222.7
C4 N4 HN41 HN42 234.7 180.1
HN42 N4 C4 C4A 234.1 42.8
C4 N4 HN42 HN41 129.9 179.9
N1 C8A C4A C5 180.4 179.8
C4 C4A C5 C8A 180.5 179.7
C5 C4A C8A N8 358.2 359.7
C5M C5 C4A C6 179.2 179.8
C4A C5 C5M H5M1 180.0 277.0
C4A C5 C5M H5M2 305.3 37.0
C4A C5 C5M H5M3 54.7 156.9
C4A C5 C6 C7 1.5 359.5
C4A C5 C6 C9 177.1 179.8
N1 C8A C4A N8 182.2 180.1
C4 C4A C8A C5 179.5 180.3
C8A C4A C5 C5M 178.3 180.3
C8A C4A C5 C6 359.2 0.5
C7 N8 C8A C4A 3.5 0.1
C5M C5 C4A C8A 178.3 180.3
C4A C5 C5M C6 180.9 180.2
C5M C5 C6 C7 182.4 179.8
C5M C5 C6 C9 357.9 360.0
H5M1 C5M C5 H5M2 234.7 240.0
H5M1 C5M C5 H5M3 125.3 120.0
H5M2 C5M C5 H5M3 250.6 240.0
C6 C5 C4A C8A 359.2 0.5
C4A C5 C6 C5M 179.2 179.8
C6 C5 C5M H5M1 359.1 96.7
C6 C5 C5M H5M2 124.5 216.7
C6 C5 C5M H5M3 233.8 336.7
C7 C6 C5 C9 184.4 179.8
C5 C6 C7 N8 0.3 0.3
C5 C6 C7 H7 180.3 180.2
C5 C6 C9 C1' 145.1 275.5
C5 C6 C9 H91 270.4 155.6
C5 C6 C9 H92 19.8 35.6
H5M1 C5M C5 C6 359.1 96.7
C5 C5M H5M1 H5M2 125.3 120.0
C5 C5M H5M1 H5M3 234.7 240.0
H5M2 C5M H5M1 H5M3 109.4 120.0
H5M2 C5M C5 C6 124.5 216.7
C5 C5M H5M2 H5M1 226.9 240.0
C5 C5M H5M2 H5M3 113.4 120.0
H5M1 C5M H5M2 H5M3 246.6 239.9
H5M3 C5M C5 C6 233.8 336.7
C5 C5M H5M3 H5M1 133.1 120.0
C5 C5M H5M3 H5M2 246.5 240.0
H5M1 C5M H5M3 H5M2 113.4 120.0
C5 C6 C7 C9 175.5 180.2
C7 C6 C9 C1' 320.6 95.8
C7 C6 C9 H91 85.9 335.8
C7 C6 C9 H92 195.4 215.9
N8 C7 C6 H7 180.0 180.0
C6 C7 N8 C8A 357.2 359.9
C5 C6 C9 C7 184.5 179.8
C9 C6 C7 N8 184.7 180.0
C9 C6 C7 H7 4.7 360.0
C1' C9 C6 H91 234.7 120.0
C1' C9 C6 H92 125.3 239.9
C6 C9 C1' C2' 270.5 275.2
C6 C9 C1' C6' 91.3 95.5
H91 C9 C6 H92 250.6 120.0
N1 C8A N8 C7 181.5 180.0
C4A C8A N8 C7 3.5 0.1
N8 C7 C6 C9 184.7 180.0
C6 C7 N8 H7 180.0 180.0
H7 C7 C6 C9 4.7 360.0
C6 C7 H7 N8 180.0 180.0
H7 C7 N8 C8A 177.2 180.0
N1 C8A N8 C4A 178.0 179.9
C8A N8 C7 H7 177.2 180.0
C6 C9 C1' H91 125.3 240.0
C6 C9 C1' H92 234.8 120.1
H91 C9 C1' H92 109.5 240.1
C2' C1' C9 C6' 179.2 179.7
C9 C1' C2' O2' 358.3 0.1
C9 C1' C2' C3' 178.4 180.0
C9 C1' C6' C5' 181.2 180.2
C9 C1' C6' H6' 1.3 359.7
C6 C9 H91 C1' 233.1 120.0
C6 C9 H91 H92 116.5 240.0
C1' C9 H91 H92 243.4 120.0
H91 C9 C1' C2' 145.3 35.2
H91 C9 C1' C6' 326.0 215.5
C6 C9 H92 C1' 126.9 239.9
C6 C9 H92 H91 243.5 120.0
C1' C9 H92 H91 116.6 240.1
H92 C9 C1' C2' 35.8 155.1
H92 C9 C1' C6' 216.5 335.4
C2' C1' C9 H91 145.3 35.2
C2' C1' C9 H92 35.8 155.1
C9 C1' C2' C6' 180.8 180.3
C2' C1' C6' C5' 2.0 0.5
C2' C1' C6' H6' 182.0 180.0
O2' C2' C1' C3' 179.9 180.0
C1' C2' O2' C21 153.2 180.0
C1' C2' C3' C4' 1.0 0.0
C1' C2' C3' H3' 181.0 180.0
C6' C1' C9 H91 326.0 215.5
C6' C1' C9 H92 216.5 335.4
C9 C1' C6' C2' 179.2 179.7
C6' C1' C2' O2' 177.5 179.8
C6' C1' C2' C3' 357.6 359.7
C4' C5' C6' C1' 359.8 359.5
O5' C5' C6' C1' 178.6 179.7
C5' C6' C1' H6' 180.0 180.5
O2' C2' C1' C6' 177.5 179.8
C1' C2' O2' C3' 180.1 180.0
O2' C2' C3' C4' 181.1 180.0
O2' C2' C3' H3' 1.1 360.0
C2' O2' C21 H211 180.0 180.0
C2' O2' C21 H212 305.2 300.0
C2' O2' C21 H213 54.7 59.9
C3' C2' C1' C6' 357.6 359.7
C1' C2' C3' O2' 179.8 180.0
C3' C2' O2' C21 333.1 0.1
C4' C3' C2' H3' 180.0 180.0
C2' C3' C4' C5' 0.7 360.0
C2' C3' C4' H4' 180.8 180.0
C21 O2' C2' C3' 333.1 0.1
H211 C21 O2' H212 234.8 240.0
H211 C21 O2' H213 125.3 120.1
H212 C21 O2' H213 250.5 240.1
O2' C21 H211 H212 125.2 120.0
O2' C21 H211 H213 234.7 239.9
H212 C21 H211 H213 109.5 120.0
O2' C21 H212 H211 227.4 240.0
O2' C21 H212 H213 113.7 120.0
H211 C21 H212 H213 246.3 240.0
O2' C21 H213 H211 132.6 120.1
O2' C21 H213 H212 246.3 240.1
H211 C21 H213 H212 113.7 120.0
C2' C3' C4' H3' 180.0 180.0
C5' C4' C3' H4' 179.9 179.9
C3' C4' C5' O5' 180.3 180.0
C3' C4' C5' C6' 358.8 0.3
C2' C3' H3' C4' 180.0 180.0
H3' C3' C4' C5' 180.7 180.0
H3' C3' C4' H4' 0.8 0.1
C1' C6' C5' C4' 359.8 359.5
C5' C4' C3' H3' 180.7 180.0
C3' C4' C5' H4' 180.1 180.1
O5' C5' C4' C6' 181.4 179.8
C4' C5' O5' C51 11.1 0.0
C4' C5' C6' H6' 179.8 180.0
H4' C4' C3' H3' 0.8 0.1
C3' C4' H4' C5' 179.9 179.9
H4' C4' C5' O5' 0.2 360.0
H4' C4' C5' C6' 178.8 180.2
C1' C6' C5' O5' 178.6 179.7
O5' C5' C4' H4' 0.2 360.0
C4' C5' O5' C6' 178.7 180.2
O5' C5' C6' H6' 358.6 0.2
C5' O5' C51 H511 180.0 180.0
C5' O5' C51 H512 305.3 300.0
C5' O5' C51 H513 54.7 60.0
C1' C6' C5' H6' 180.0 179.5
C6' C5' C4' H4' 178.8 180.2
C4' C5' C6' O5' 181.2 179.8
C6' C5' O5' C51 192.4 179.8
C51 O5' C5' C6' 192.4 179.8
H511 C51 O5' H512 234.7 240.0
H511 C51 O5' H513 125.3 120.0
H512 C51 O5' H513 250.6 240.0
O5' C51 H511 H512 125.2 120.0
O5' C51 H511 H513 234.7 240.0
H512 C51 H511 H513 109.5 120.0
O5' C51 H512 H511 239.0 240.0
O5' C51 H512 H513 119.5 120.0
H511 C51 H512 H513 240.4 240.0
O5' C51 H513 H511 121.0 120.0
O5' C51 H513 H512 240.5 240.0
H511 C51 H513 H512 119.5 120.0
C1' C6' H6' C5' 180.0 180.5