Atom Nomenclature for MUS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MUS

Atom Name (V3) Atom Name (V2)
O16 O16
C16 C16
C15 C15
O15 O15
C14 C14
O14 O14
C13 C13
O13 O13
C12 C12
N12 N12
C17 C17
C18 C18
O17 O17
C11 C11
O11 O11
C10 C10
C9 C9
C19 C19
O19 O19
O20 O20
O9 O9
C7 C7
C6 C6
C8 C8
C8A C8A
C4A C4A
C5 C5
O1 O1
C2 C2
O2 O2
C3 C3
C4 C4
CM4 CM4
H16 H16
H161 1H16
H162 2H16
H15 H15
H2 H2
H14 H14
H1 H1
H13 H13
H12 H12
H4 H4
H181 1H18
H182 2H18
H183 3H18
H11 H11
H7 H7
H101 1H10
H102 2H10
H19 H19
H6 H6
H8 H8
H5 H5
H3 H3
HM41 1HM4
HM42 2HM4
HM43 3HM4