PDB Chemical Component MTY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MTY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.423 |
1.468 |
| N |
H |
1.021 |
1.008 |
| N |
H2 |
1.020 |
1.010 |
| CA |
CB |
1.520 |
1.529 |
| CA |
C |
1.514 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.516 |
1.506 |
| CB |
HB2 |
1.114 |
1.090 |
| CB |
HB3 |
1.115 |
1.091 |
| CG |
CD1 |
1.386 |
1.383 |
| CG |
CD2 |
1.396 |
1.381 |
| CD1 |
CE1 |
1.378 |
1.383 |
| CD1 |
HD1 |
1.104 |
1.080 |
| CE1 |
CZ |
1.420 |
1.381 |
| CE1 |
HE1 |
1.103 |
1.080 |
| CD2 |
CE2 |
1.394 |
1.387 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE2 |
CZ |
1.379 |
1.386 |
| CE2 |
OH |
1.387 |
1.360 |
| CZ |
HZ |
1.102 |
1.080 |
| OH |
HH |
0.949 |
0.966 |
| C |
O |
1.217 |
1.207 |
| C |
OXT |
1.315 |
1.342 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for MTY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
110.6 |
106.8 |
| CA |
N |
H2 |
111.8 |
106.7 |
| N |
CA |
CB |
110.6 |
109.4 |
| N |
CA |
C |
110.1 |
109.5 |
| N |
CA |
HA |
108.3 |
109.4 |
| H |
N |
H2 |
111.8 |
106.6 |
| CB |
CA |
C |
109.5 |
109.5 |
| CB |
CA |
HA |
108.9 |
109.5 |
| CA |
CB |
CG |
112.6 |
109.5 |
| CA |
CB |
HB2 |
111.0 |
109.5 |
| CA |
CB |
HB3 |
111.0 |
109.4 |
| C |
CA |
HA |
109.4 |
109.5 |
| CA |
C |
O |
120.8 |
120.0 |
| CA |
C |
OXT |
116.2 |
120.0 |
| CG |
CB |
HB2 |
111.1 |
109.5 |
| CG |
CB |
HB3 |
111.1 |
109.5 |
| CB |
CG |
CD1 |
120.4 |
119.9 |
| CB |
CG |
CD2 |
120.6 |
120.0 |
| HB2 |
CB |
HB3 |
99.3 |
109.4 |
| CD1 |
CG |
CD2 |
119.0 |
120.0 |
| CG |
CD1 |
CE1 |
121.1 |
120.1 |
| CG |
CD1 |
HD1 |
119.7 |
119.9 |
| CG |
CD2 |
CE2 |
120.8 |
120.0 |
| CG |
CD2 |
HD2 |
119.6 |
120.0 |
| CE1 |
CD1 |
HD1 |
119.2 |
120.0 |
| CD1 |
CE1 |
CZ |
119.8 |
120.1 |
| CD1 |
CE1 |
HE1 |
118.6 |
120.0 |
| CZ |
CE1 |
HE1 |
121.6 |
120.0 |
| CE1 |
CZ |
CE2 |
119.3 |
119.9 |
| CE1 |
CZ |
HZ |
121.8 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.6 |
120.1 |
| CD2 |
CE2 |
CZ |
120.0 |
119.9 |
| CD2 |
CE2 |
OH |
120.8 |
120.1 |
| CZ |
CE2 |
OH |
119.1 |
120.0 |
| CE2 |
CZ |
HZ |
118.9 |
120.0 |
| CE2 |
OH |
HH |
120.7 |
106.8 |
| O |
C |
OXT |
122.9 |
120.0 |
| C |
OXT |
HXT |
116.2 |
120.0 |
Torsion Angles for MTY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.7 |
| CB |
CA |
N |
C |
238.9 |
240.0 |
| CB |
CA |
N |
HA |
119.3 |
119.9 |
| N |
CA |
CB |
CG |
177.8 |
300.0 |
| N |
CA |
CB |
HB2 |
303.1 |
60.1 |
| N |
CA |
CB |
HB3 |
52.5 |
180.0 |
| C |
CA |
N |
HA |
240.4 |
240.0 |
| N |
CA |
C |
O |
136.6 |
330.0 |
| N |
CA |
C |
OXT |
314.5 |
150.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
CB |
180.0 |
53.7 |
| H |
N |
CA |
C |
301.1 |
173.7 |
| H |
N |
CA |
HA |
60.7 |
293.7 |
| CA |
N |
H2 |
H |
124.6 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
299.9 |
| H2 |
N |
CA |
C |
175.9 |
60.0 |
| H2 |
N |
CA |
HA |
295.5 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
299.9 |
| N |
CA |
CB |
C |
121.5 |
120.0 |
| N |
CA |
CB |
HA |
241.1 |
240.1 |
| C |
CA |
CB |
HA |
119.6 |
120.1 |
| CB |
CA |
C |
O |
258.4 |
90.0 |
| CB |
CA |
C |
OXT |
76.3 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
239.9 |
| CG |
CB |
CA |
HB3 |
125.3 |
120.0 |
| CA |
CB |
CG |
CD1 |
264.6 |
90.0 |
| CA |
CB |
CG |
CD2 |
82.3 |
269.7 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
240.1 |
| C |
CA |
N |
H |
301.1 |
173.7 |
| C |
CA |
N |
H2 |
175.9 |
60.0 |
| N |
CA |
C |
CB |
238.2 |
240.0 |
| N |
CA |
C |
HA |
118.9 |
120.0 |
| CB |
CA |
C |
HA |
240.7 |
240.0 |
| C |
CA |
CB |
CG |
56.3 |
180.0 |
| C |
CA |
CB |
HB2 |
181.6 |
300.1 |
| C |
CA |
CB |
HB3 |
291.0 |
60.0 |
| O |
C |
CA |
OXT |
182.1 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| HA |
CA |
N |
H |
60.7 |
293.7 |
| HA |
CA |
N |
H2 |
295.5 |
180.0 |
| N |
CA |
HA |
CB |
120.3 |
119.9 |
| N |
CA |
HA |
C |
240.0 |
240.0 |
| CB |
CA |
HA |
C |
119.7 |
120.1 |
| HA |
CA |
CB |
CG |
296.7 |
59.9 |
| HA |
CA |
CB |
HB2 |
62.0 |
180.0 |
| HA |
CA |
CB |
HB3 |
171.4 |
299.9 |
| HA |
CA |
C |
O |
17.7 |
210.1 |
| HA |
CA |
C |
OXT |
195.6 |
30.0 |
| CG |
CB |
CA |
C |
56.3 |
180.0 |
| CG |
CB |
CA |
HA |
296.7 |
59.9 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.1 |
| CA |
CB |
CG |
HB3 |
234.8 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
119.9 |
| CD1 |
CG |
CB |
CD2 |
182.3 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
177.7 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
357.8 |
359.9 |
| CB |
CG |
CD2 |
CE2 |
181.9 |
179.8 |
| CB |
CG |
CD2 |
HD2 |
1.8 |
0.3 |
| HB2 |
CB |
CA |
C |
181.6 |
300.1 |
| HB2 |
CB |
CA |
HA |
62.0 |
180.0 |
| CA |
CB |
HB2 |
CG |
233.8 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
116.8 |
119.9 |
| CG |
CB |
HB2 |
HB3 |
243.0 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
139.3 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
317.0 |
149.7 |
| HB3 |
CB |
CA |
C |
291.0 |
60.0 |
| HB3 |
CB |
CA |
HA |
171.4 |
299.9 |
| CA |
CB |
HB3 |
CG |
126.1 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
243.1 |
240.1 |
| CG |
CB |
HB3 |
HB2 |
117.0 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
29.8 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
207.5 |
29.7 |
| CD1 |
CG |
CB |
HB2 |
139.3 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
29.8 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
177.8 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
359.6 |
359.5 |
| CD1 |
CG |
CD2 |
HD2 |
179.6 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
0.2 |
360.0 |
| CG |
CD1 |
CE1 |
HE1 |
180.3 |
180.0 |
| CD2 |
CG |
CB |
HB2 |
317.0 |
149.7 |
| CD2 |
CG |
CB |
HB3 |
207.5 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
182.3 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
360.0 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
180.0 |
180.2 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.5 |
| CG |
CD2 |
CE2 |
CZ |
0.6 |
0.5 |
| CG |
CD2 |
CE2 |
OH |
183.0 |
180.2 |
| CE1 |
CD1 |
CG |
CD2 |
360.0 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
359.9 |
360.0 |
| CD1 |
CE1 |
CZ |
HZ |
179.9 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
180.0 |
180.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
180.2 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
0.2 |
360.0 |
| CZ |
CE1 |
CD1 |
HD1 |
180.2 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.7 |
359.8 |
| CE1 |
CZ |
CE2 |
OH |
177.3 |
180.0 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CD1 |
HD1 |
0.2 |
360.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
CE2 |
179.9 |
180.0 |
| HE1 |
CE1 |
CZ |
HZ |
359.9 |
360.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.5 |
| CE1 |
CZ |
CE2 |
CD2 |
359.7 |
359.8 |
| CZ |
CE2 |
CD2 |
OH |
177.5 |
180.3 |
| CD2 |
CE2 |
CZ |
HZ |
179.7 |
179.8 |
| CD2 |
CE2 |
OH |
HH |
180.0 |
270.3 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.5 |
| HD2 |
CD2 |
CE2 |
CZ |
180.6 |
180.0 |
| HD2 |
CD2 |
CE2 |
OH |
3.1 |
359.8 |
| CE2 |
CZ |
CE1 |
HE1 |
179.9 |
180.0 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HD2 |
180.6 |
180.0 |
| CD2 |
CE2 |
CZ |
OH |
182.4 |
179.7 |
| CZ |
CE2 |
OH |
HH |
2.5 |
90.0 |
| OH |
CE2 |
CD2 |
HD2 |
3.1 |
359.8 |
| CD2 |
CE2 |
OH |
CZ |
177.6 |
180.3 |
| OH |
CE2 |
CZ |
HZ |
357.2 |
0.1 |
| HZ |
CZ |
CE1 |
HE1 |
359.9 |
360.0 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
180.0 |
| HZ |
CZ |
CE2 |
OH |
357.2 |
0.1 |
| O |
C |
CA |
HA |
17.7 |
210.1 |
| CA |
C |
O |
OXT |
177.7 |
180.0 |
| O |
C |
OXT |
HXT |
357.8 |
0.0 |
| OXT |
C |
CA |
HA |
195.6 |
30.0 |
| CA |
C |
OXT |
O |
182.2 |
180.0 |