PDB Chemical Component MTV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MTV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.343 |
1.329 |
| C2 |
N2 |
1.341 |
1.379 |
| C2 |
N3 |
1.356 |
1.322 |
| N3 |
C4 |
1.342 |
1.342 |
| C4 |
O4 |
1.371 |
1.223 |
| N5 |
C6 |
1.324 |
1.305 |
| C6 |
C7 |
1.430 |
1.501 |
| C7 |
N8 |
1.452 |
1.472 |
| C4 |
C9 |
1.414 |
1.466 |
| N5 |
C9 |
1.346 |
1.334 |
| N1 |
C10 |
1.341 |
1.321 |
| N8 |
C10 |
1.332 |
1.381 |
| C9 |
C10 |
1.483 |
1.415 |
| C6 |
C1' |
1.496 |
1.456 |
| C1' |
S1' |
1.674 |
1.797 |
| C1' |
C2' |
1.298 |
1.393 |
| C2' |
S2' |
1.685 |
1.802 |
| C2' |
C3' |
1.457 |
1.400 |
| C7 |
O3' |
1.462 |
1.453 |
| C3' |
O3' |
1.473 |
1.335 |
| C3' |
C4' |
1.325 |
1.507 |
| C4' |
O4' |
1.414 |
1.430 |
| O4' |
P |
1.562 |
1.610 |
| P |
O1P |
1.511 |
1.480 |
| P |
O2P |
1.517 |
1.610 |
| P |
O3P |
1.529 |
1.610 |
| S1' |
MOM1 |
2.349 |
2.435 |
| S2' |
MOM1 |
2.365 |
2.438 |
| C7 |
H7 |
1.100 |
1.089 |
| N8 |
H8 |
1.000 |
0.971 |
| MOM1 |
OM1 |
1.977 |
1.743 |
| MOM1 |
OM2 |
2.077 |
2.000 |
| C4' |
H4'1 |
1.100 |
1.090 |
| C4' |
H4'2 |
1.100 |
1.089 |
| N2 |
H21N |
1.000 |
0.970 |
| N2 |
H22N |
1.000 |
0.970 |
| O2P |
H2P |
0.950 |
0.966 |
| O3P |
H3P |
0.950 |
0.968 |
| OM2 |
HM11 |
0.950 |
0.966 |
Bond Angles for MTV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C2 |
N2 |
117.4 |
118.3 |
| N1 |
C2 |
N3 |
122.3 |
123.3 |
| C2 |
N1 |
C10 |
118.6 |
121.3 |
| N2 |
C2 |
N3 |
120.3 |
118.4 |
| C2 |
N2 |
H21N |
109.8 |
120.1 |
| C2 |
N2 |
H22N |
125.1 |
120.0 |
| C2 |
N3 |
C4 |
123.3 |
121.0 |
| N3 |
C4 |
O4 |
116.4 |
121.2 |
| N3 |
C4 |
C9 |
118.2 |
117.5 |
| O4 |
C4 |
C9 |
125.4 |
121.3 |
| N5 |
C6 |
C7 |
123.7 |
122.4 |
| C6 |
N5 |
C9 |
122.0 |
121.3 |
| N5 |
C6 |
C1' |
124.9 |
118.4 |
| C6 |
C7 |
N8 |
114.4 |
109.0 |
| C7 |
C6 |
C1' |
111.2 |
119.2 |
| C6 |
C7 |
O3' |
100.2 |
108.0 |
| C6 |
C7 |
H7 |
111.8 |
110.1 |
| C7 |
N8 |
C10 |
121.2 |
117.4 |
| N8 |
C7 |
O3' |
107.6 |
109.1 |
| N8 |
C7 |
H7 |
104.9 |
110.0 |
| C7 |
N8 |
H8 |
119.4 |
121.3 |
| C4 |
C9 |
N5 |
125.9 |
122.0 |
| C4 |
C9 |
C10 |
116.4 |
117.5 |
| N5 |
C9 |
C10 |
117.8 |
120.5 |
| N1 |
C10 |
N8 |
118.4 |
122.1 |
| N1 |
C10 |
C9 |
121.3 |
119.3 |
| N8 |
C10 |
C9 |
120.3 |
118.6 |
| C10 |
N8 |
H8 |
119.4 |
121.3 |
| C6 |
C1' |
S1' |
118.9 |
113.6 |
| C6 |
C1' |
C2' |
120.2 |
117.0 |
| S1' |
C1' |
C2' |
120.8 |
129.4 |
| C1' |
S1' |
MOM1 |
109.3 |
93.1 |
| C1' |
C2' |
S2' |
120.8 |
126.9 |
| C1' |
C2' |
C3' |
110.7 |
119.3 |
| S2' |
C2' |
C3' |
128.0 |
113.8 |
| C2' |
S2' |
MOM1 |
108.3 |
93.9 |
| C2' |
C3' |
O3' |
121.5 |
122.0 |
| C2' |
C3' |
C4' |
115.5 |
119.0 |
| C7 |
O3' |
C3' |
114.8 |
116.7 |
| O3' |
C7 |
H7 |
118.2 |
110.6 |
| O3' |
C3' |
C4' |
122.8 |
119.0 |
| C3' |
C4' |
O4' |
117.5 |
109.4 |
| C3' |
C4' |
H4'1 |
106.8 |
109.4 |
| C3' |
C4' |
H4'2 |
105.0 |
109.5 |
| C4' |
O4' |
P |
120.1 |
123.0 |
| O4' |
C4' |
H4'1 |
106.9 |
109.5 |
| O4' |
C4' |
H4'2 |
105.0 |
109.5 |
| O4' |
P |
O1P |
109.2 |
109.5 |
| O4' |
P |
O2P |
101.1 |
109.5 |
| O4' |
P |
O3P |
99.9 |
109.5 |
| O1P |
P |
O2P |
114.4 |
109.5 |
| O1P |
P |
O3P |
117.4 |
109.5 |
| O2P |
P |
O3P |
112.4 |
109.5 |
| P |
O2P |
H2P |
109.5 |
114.0 |
| P |
O3P |
H3P |
109.5 |
114.0 |
| S1' |
MOM1 |
S2' |
79.7 |
96.1 |
| S1' |
MOM1 |
OM1 |
113.8 |
112.0 |
| S1' |
MOM1 |
OM2 |
82.6 |
112.0 |
| S2' |
MOM1 |
OM1 |
107.3 |
112.0 |
| S2' |
MOM1 |
OM2 |
142.1 |
112.0 |
| OM1 |
MOM1 |
OM2 |
110.5 |
111.8 |
| MOM1 |
OM2 |
HM11 |
109.5 |
114.0 |
| H4'1 |
C4' |
H4'2 |
116.0 |
109.5 |
| H21N |
N2 |
H22N |
125.1 |
119.9 |
Torsion Angles for MTV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C2 |
N1 |
N3 |
180.7 |
179.9 |
| N1 |
C2 |
N2 |
H21N |
180.0 |
0.1 |
| N1 |
C2 |
N2 |
H22N |
360.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.6 |
0.3 |
| C2 |
N1 |
C10 |
N8 |
180.9 |
178.9 |
| C2 |
N1 |
C10 |
C9 |
359.9 |
359.2 |
| N1 |
C2 |
N2 |
N3 |
179.3 |
180.1 |
| N2 |
C2 |
N1 |
C10 |
180.2 |
179.6 |
| N2 |
C2 |
N3 |
C4 |
178.8 |
180.4 |
| H21N |
N2 |
C2 |
H22N |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
N2 |
180.7 |
179.9 |
| N3 |
C2 |
N1 |
C10 |
359.5 |
359.7 |
| N3 |
C2 |
N2 |
H21N |
0.7 |
180.0 |
| N3 |
C2 |
N2 |
H22N |
180.7 |
360.0 |
| C2 |
N3 |
C4 |
O4 |
179.9 |
180.8 |
| C2 |
N3 |
C4 |
C9 |
2.0 |
0.7 |
| O4 |
C4 |
N3 |
C9 |
177.9 |
180.1 |
| N3 |
C4 |
C9 |
N5 |
178.3 |
178.9 |
| N3 |
C4 |
C9 |
C10 |
357.5 |
358.3 |
| N3 |
C4 |
O4 |
C9 |
182.2 |
179.9 |
| O4 |
C4 |
C9 |
N5 |
0.6 |
358.8 |
| O4 |
C4 |
C9 |
C10 |
179.8 |
178.2 |
| N5 |
C6 |
C7 |
N8 |
9.6 |
333.7 |
| C7 |
C6 |
N5 |
C1' |
174.3 |
181.3 |
| N5 |
C6 |
C7 |
O3' |
254.8 |
215.2 |
| N5 |
C6 |
C7 |
H7 |
128.7 |
94.4 |
| C4 |
C9 |
N5 |
C6 |
180.9 |
191.0 |
| C6 |
N5 |
C9 |
C10 |
1.7 |
11.6 |
| N5 |
C6 |
C1' |
S1' |
306.9 |
354.4 |
| N5 |
C6 |
C1' |
C2' |
127.7 |
172.1 |
| C7 |
C6 |
N5 |
C9 |
353.1 |
2.5 |
| N5 |
C6 |
C7 |
C1' |
185.1 |
178.7 |
| C6 |
C7 |
N8 |
C10 |
352.3 |
37.8 |
| N8 |
C7 |
C6 |
O3' |
114.8 |
118.4 |
| N8 |
C7 |
C6 |
H7 |
240.9 |
239.3 |
| C6 |
C7 |
N8 |
H8 |
172.3 |
217.8 |
| C7 |
C6 |
C1' |
S1' |
132.1 |
173.1 |
| C7 |
C6 |
C1' |
C2' |
312.8 |
350.9 |
| C6 |
C7 |
O3' |
C3' |
314.0 |
311.3 |
| O3' |
C7 |
C6 |
H7 |
126.1 |
120.8 |
| N8 |
C7 |
C6 |
C1' |
184.5 |
155.0 |
| C6 |
C7 |
N8 |
O3' |
249.6 |
242.2 |
| C6 |
C7 |
N8 |
H7 |
123.0 |
120.8 |
| N1 |
C10 |
N8 |
C7 |
182.5 |
152.5 |
| C7 |
N8 |
C10 |
C9 |
3.5 |
332.2 |
| C10 |
N8 |
C7 |
H8 |
180.0 |
180.1 |
| N8 |
C7 |
O3' |
C3' |
194.2 |
192.9 |
| O3' |
C7 |
N8 |
H7 |
233.3 |
238.5 |
| N3 |
C4 |
C9 |
O4 |
177.7 |
180.1 |
| C6 |
N5 |
C9 |
C4 |
180.9 |
191.0 |
| N5 |
C9 |
C4 |
C10 |
180.8 |
180.6 |
| N1 |
C10 |
C9 |
C4 |
1.6 |
1.7 |
| N8 |
C10 |
C9 |
C4 |
180.6 |
182.0 |
| C9 |
N5 |
C6 |
C7 |
353.1 |
2.5 |
| C9 |
N5 |
C6 |
C1' |
178.9 |
181.2 |
| C4 |
C9 |
N5 |
C10 |
179.2 |
179.4 |
| N1 |
C10 |
C9 |
N5 |
180.9 |
181.2 |
| N8 |
C10 |
C9 |
N5 |
359.9 |
1.4 |
| C10 |
N1 |
C2 |
N2 |
180.2 |
179.6 |
| C10 |
N1 |
C2 |
N3 |
359.5 |
359.7 |
| C7 |
N8 |
C10 |
N1 |
182.5 |
152.5 |
| C4 |
C9 |
C10 |
N1 |
1.6 |
1.7 |
| N5 |
C9 |
C10 |
N1 |
180.9 |
181.2 |
| N8 |
C10 |
N1 |
C9 |
181.0 |
179.7 |
| N1 |
C10 |
N8 |
H8 |
2.5 |
332.6 |
| C10 |
N8 |
C7 |
O3' |
102.6 |
155.6 |
| C10 |
N8 |
C7 |
H7 |
229.3 |
277.1 |
| C7 |
N8 |
C10 |
H8 |
180.0 |
179.9 |
| C4 |
C9 |
C10 |
N8 |
180.6 |
182.0 |
| N5 |
C9 |
C10 |
N8 |
359.9 |
1.4 |
| N1 |
C10 |
N8 |
C9 |
179.0 |
180.3 |
| C4 |
C9 |
C10 |
N5 |
180.7 |
180.6 |
| N1 |
C10 |
C9 |
N8 |
181.0 |
179.7 |
| C9 |
C10 |
N8 |
H8 |
183.5 |
152.3 |
| N5 |
C6 |
C1' |
C7 |
174.9 |
181.3 |
| C1' |
C6 |
N5 |
C9 |
178.9 |
181.2 |
| C1' |
C6 |
C7 |
N8 |
184.5 |
155.0 |
| C1' |
C6 |
C7 |
O3' |
69.8 |
36.6 |
| C1' |
C6 |
C7 |
H7 |
303.6 |
275.7 |
| S1' |
C1' |
C6 |
C2' |
179.2 |
182.2 |
| C6 |
C1' |
S1' |
MOM1 |
186.1 |
184.0 |
| C6 |
C1' |
C2' |
S2' |
182.2 |
171.6 |
| C6 |
C1' |
C2' |
C3' |
354.2 |
350.1 |
| C6 |
C1' |
S1' |
C2' |
180.8 |
177.4 |
| S1' |
C1' |
C2' |
S2' |
2.9 |
349.0 |
| S1' |
C1' |
C2' |
C3' |
175.0 |
167.4 |
| C1' |
S1' |
MOM1 |
S2' |
352.2 |
358.8 |
| C1' |
S1' |
MOM1 |
OM1 |
96.7 |
115.6 |
| C1' |
S1' |
MOM1 |
OM2 |
205.9 |
242.1 |
| C6 |
C1' |
C2' |
S1' |
179.2 |
182.6 |
| C2' |
C1' |
S1' |
MOM1 |
5.3 |
6.6 |
| S2' |
C2' |
C1' |
C3' |
187.9 |
181.5 |
| C1' |
C2' |
S2' |
MOM1 |
350.5 |
7.2 |
| C1' |
C2' |
C3' |
O3' |
29.6 |
357.8 |
| C1' |
C2' |
C3' |
C4' |
215.5 |
177.8 |
| C1' |
C2' |
S2' |
C3' |
170.6 |
178.5 |
| S2' |
C2' |
C3' |
O3' |
201.0 |
176.4 |
| S2' |
C2' |
C3' |
C4' |
26.8 |
356.4 |
| S1' |
MOM1 |
S2' |
C2' |
8.9 |
357.8 |
| C2' |
S2' |
MOM1 |
OM1 |
257.0 |
241.1 |
| C2' |
S2' |
MOM1 |
OM2 |
72.3 |
114.6 |
| C1' |
C2' |
C3' |
S2' |
188.6 |
181.3 |
| C3' |
C2' |
S2' |
MOM1 |
179.9 |
188.7 |
| C7 |
O3' |
C3' |
C2' |
358.6 |
34.3 |
| O3' |
C3' |
C2' |
C4' |
174.1 |
180.0 |
| C2' |
C3' |
C4' |
O4' |
179.1 |
115.0 |
| C2' |
C3' |
C4' |
H4'1 |
299.1 |
235.0 |
| C2' |
C3' |
C4' |
H4'2 |
62.9 |
355.0 |
| C6 |
C7 |
O3' |
N8 |
119.9 |
118.4 |
| O3' |
C7 |
C6 |
C1' |
69.8 |
36.6 |
| C6 |
C7 |
O3' |
H7 |
238.3 |
239.5 |
| O3' |
C7 |
N8 |
C10 |
102.6 |
155.6 |
| N8 |
C7 |
O3' |
H7 |
118.5 |
121.1 |
| O3' |
C7 |
N8 |
H8 |
282.6 |
335.5 |
| C2' |
C3' |
O3' |
C7 |
358.6 |
34.3 |
| C7 |
O3' |
C3' |
C4' |
172.3 |
214.3 |
| C2' |
C3' |
O3' |
C4' |
186.3 |
180.0 |
| C3' |
O3' |
C7 |
H7 |
75.7 |
71.8 |
| O3' |
C3' |
C4' |
O4' |
5.1 |
295.0 |
| O3' |
C3' |
C4' |
H4'1 |
125.1 |
55.0 |
| O3' |
C3' |
C4' |
H4'2 |
248.8 |
175.0 |
| C2' |
C3' |
C4' |
O3' |
174.0 |
180.0 |
| C3' |
C4' |
O4' |
P |
199.0 |
180.0 |
| O4' |
C4' |
C3' |
H4'1 |
240.0 |
240.0 |
| O4' |
C4' |
C3' |
H4'2 |
116.2 |
120.0 |
| H4'1 |
C4' |
C3' |
H4'2 |
236.2 |
240.0 |
| C3' |
C4' |
O4' |
H4'1 |
120.0 |
119.9 |
| C3' |
C4' |
O4' |
H4'2 |
243.8 |
240.0 |
| C4' |
O4' |
P |
O1P |
305.4 |
55.0 |
| C4' |
O4' |
P |
O2P |
184.5 |
175.0 |
| C4' |
O4' |
P |
O3P |
69.1 |
295.0 |
| H4'1 |
C4' |
O4' |
H4'2 |
123.8 |
120.0 |
| P |
O4' |
C4' |
H4'1 |
79.0 |
60.0 |
| P |
O4' |
C4' |
H4'2 |
315.2 |
300.0 |
| O1P |
P |
O4' |
O2P |
120.9 |
240.0 |
| O1P |
P |
O4' |
O3P |
236.3 |
120.0 |
| O2P |
P |
O4' |
O3P |
115.3 |
240.0 |
| O4' |
P |
O2P |
H2P |
269.4 |
180.0 |
| O4' |
P |
O3P |
H3P |
227.7 |
300.0 |
| O4' |
P |
O1P |
O2P |
247.6 |
120.0 |
| O4' |
P |
O1P |
O3P |
112.7 |
240.0 |
| O2P |
P |
O1P |
O3P |
225.1 |
120.0 |
| O1P |
P |
O2P |
H2P |
152.2 |
300.0 |
| O1P |
P |
O3P |
H3P |
345.5 |
180.0 |
| O4' |
P |
O2P |
O1P |
117.2 |
240.0 |
| O4' |
P |
O2P |
O3P |
254.3 |
120.0 |
| O1P |
P |
O2P |
O3P |
137.1 |
240.0 |
| O2P |
P |
O3P |
H3P |
121.2 |
60.0 |
| O4' |
P |
O3P |
O1P |
242.2 |
120.0 |
| O4' |
P |
O3P |
O2P |
106.4 |
240.0 |
| O1P |
P |
O3P |
O2P |
224.3 |
120.0 |
| O3P |
P |
O2P |
H2P |
15.0 |
60.0 |
| MOM1 |
S1' |
C1' |
C2' |
5.3 |
6.6 |
| C2' |
S2' |
MOM1 |
S1' |
8.9 |
357.8 |
| S2' |
MOM1 |
S1' |
OM1 |
255.5 |
243.2 |
| S2' |
MOM1 |
S1' |
OM2 |
146.3 |
116.7 |
| OM1 |
MOM1 |
S1' |
OM2 |
250.8 |
233.5 |
| S1' |
MOM1 |
OM2 |
HM11 |
222.2 |
180.0 |
| MOM1 |
S2' |
C2' |
C3' |
179.9 |
188.7 |
| S1' |
MOM1 |
S2' |
OM1 |
111.9 |
116.7 |
| S1' |
MOM1 |
S2' |
OM2 |
296.5 |
243.2 |
| OM1 |
MOM1 |
S2' |
OM2 |
184.7 |
126.5 |
| S2' |
MOM1 |
OM2 |
HM11 |
159.6 |
73.3 |
| C6 |
C7 |
H7 |
N8 |
235.4 |
239.9 |
| H7 |
C7 |
C6 |
C1' |
303.6 |
275.7 |
| C6 |
C7 |
H7 |
O3' |
115.5 |
119.3 |
| H7 |
C7 |
N8 |
C10 |
229.3 |
277.1 |
| N8 |
C7 |
H7 |
O3' |
240.1 |
239.4 |
| H7 |
C7 |
N8 |
H8 |
49.3 |
97.0 |
| H7 |
C7 |
O3' |
C3' |
75.7 |
71.8 |
| C7 |
N8 |
H8 |
C10 |
180.0 |
180.1 |
| H8 |
N8 |
C7 |
O3' |
282.6 |
335.5 |
| H8 |
N8 |
C7 |
H7 |
49.3 |
97.0 |
| H8 |
N8 |
C10 |
C9 |
183.5 |
152.3 |
| S1' |
MOM1 |
OM1 |
S2' |
273.9 |
253.3 |
| S1' |
MOM1 |
OM1 |
OM2 |
90.8 |
126.6 |
| S2' |
MOM1 |
OM1 |
OM2 |
176.9 |
233.4 |
| OM1 |
MOM1 |
OM2 |
HM11 |
334.8 |
306.6 |
| S1' |
MOM1 |
OM2 |
S2' |
62.6 |
106.7 |
| S1' |
MOM1 |
OM2 |
OM1 |
247.3 |
233.4 |
| S2' |
MOM1 |
OM2 |
OM1 |
184.8 |
126.6 |
| C3' |
C4' |
H4'1 |
O4' |
233.4 |
240.0 |
| C3' |
C4' |
H4'1 |
H4'2 |
116.6 |
120.0 |
| H4'1 |
C4' |
O4' |
P |
79.0 |
60.0 |
| O4' |
C4' |
H4'1 |
H4'2 |
243.3 |
240.0 |
| C3' |
C4' |
H4'2 |
O4' |
124.6 |
120.0 |
| C3' |
C4' |
H4'2 |
H4'1 |
242.3 |
240.0 |
| H4'2 |
C4' |
O4' |
P |
315.2 |
300.0 |
| O4' |
C4' |
H4'2 |
H4'1 |
117.8 |
120.0 |
| H21N |
N2 |
C2 |
N3 |
0.7 |
180.0 |
| C2 |
N2 |
H21N |
H22N |
180.0 |
180.0 |
| H22N |
N2 |
C2 |
N3 |
180.7 |
360.0 |
| C2 |
N2 |
H22N |
H21N |
180.0 |
180.0 |
| H2P |
O2P |
P |
O3P |
15.0 |
60.0 |