PDB Chemical Component MTU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MTU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.491 1.501
P OP2 1.493 1.617
P O5' 1.588 1.619
P O1   1.617
OP2 HO2P 0.950 0.981
O5' C5' 1.422 1.417
C5' C4' 1.504 1.517
C5' H5' 1.100 1.091
C5' H5'' 1.100 1.091
C4' O4' 1.448 1.437
C4' C3' 1.515 1.519
C4' H4' 1.100 1.097
O4' C1' 1.412 1.444
C1' N9 1.463 1.464
C1' C2' 1.531 1.529
C1' H1' 1.100 1.095
N9 C4 1.372 1.367
N9 C8 1.376 1.371
C4 N3 1.344 1.342
C4 C5 1.384 1.385
N3 C2 1.328 1.350
C2 N2 1.291 1.414
C2 N1 1.340 1.355
N2 HN21 1.000 0.998
N2 HN22 1.000 0.998
N1 C6 1.352 1.355
C6 C5 1.401 1.391
C6 H6 1.080 1.082
C5 N7 1.387 1.373
N7 C8 1.310 1.317
C8 H8 1.080 1.081
C2' O2' 1.412 1.426
C2' C3' 1.527 1.517
C2' H2' 1.100 1.095
O2' HO2' 0.950 0.974
C3' O3' 1.424 1.412
C3' H3' 1.101 1.097
O3' HO3' 0.950 0.969
O1 HO1   0.980

Bond Angles for MTU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.8 115.3
OP1 P O5' 108.1 115.0
OP1 P O1   115.0
OP2 P O5' 107.6 103.7
OP2 P O1   103.3
P OP2 HO2P 109.5 118.9
O5' P O1   102.9
P O5' C5' 120.9 118.5
P O1 HO1   119.0
O5' C5' C4' 109.3 108.7
O5' C5' H5' 109.6 109.1
O5' C5' H5'' 109.6 109.2
C4' C5' H5' 109.6 110.1
C4' C5' H5'' 109.5 110.1
C5' C4' O4' 110.3 109.8
C5' C4' C3' 112.4 113.5
C5' C4' H4' 105.7 108.7
H5' C5' H5'' 109.3 109.6
O4' C4' C3' 105.4 105.2
O4' C4' H4' 112.6 108.3
C4' O4' C1' 109.6 108.3
C3' C4' H4' 110.6 111.2
C4' C3' C2' 102.7 102.2
C4' C3' O3' 107.7 112.2
C4' C3' H3' 117.1 110.2
O4' C1' N9 107.7 109.4
O4' C1' C2' 108.1 107.6
O4' C1' H1' 113.7 108.2
N9 C1' C2' 115.1 113.7
N9 C1' H1' 106.4 105.2
C1' N9 C4 125.9 126.9
C1' N9 C8 128.3 126.1
C2' C1' H1' 106.0 112.6
C1' C2' O2' 108.6 109.3
C1' C2' C3' 101.8 102.9
C1' C2' H2' 116.6 114.0
C4 N9 C8 105.8 107.0
N9 C4 N3 127.1 127.5
N9 C4 C5 105.8 105.3
N9 C8 N7 113.7 112.1
N9 C8 H8 123.1 122.3
N3 C4 C5 127.1 127.2
C4 N3 C2 110.5 110.4
C4 C5 C6 116.9 116.9
C4 C5 N7 110.8 110.7
N3 C2 N2 116.2 115.6
N3 C2 N1 129.1 128.9
N2 C2 N1 114.6 115.5
C2 N2 HN21 124.7 119.0
C2 N2 HN22 110.6 119.0
C2 N1 C6 118.8 117.5
HN21 N2 HN22 124.7 121.7
N1 C6 C5 117.6 119.1
N1 C6 H6 121.2 117.0
C5 C6 H6 121.2 124.0
C6 C5 N7 132.3 132.4
C5 N7 C8 103.9 104.9
N7 C8 H8 123.2 125.6
O2' C2' C3' 114.3 111.2
O2' C2' H2' 104.7 106.9
C2' O2' HO2' 109.5 107.3
C3' C2' H2' 111.2 112.6
C2' C3' O3' 115.5 113.5
C2' C3' H3' 109.5 109.5
O3' C3' H3' 104.7 109.0
C3' O3' HO3' 109.5 106.4

Torsion Angles for MTU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 236.4 120.7
OP2 P OP1 O1   240.0
OP1 P OP2 HO2P 132.8 48.7
O5' P OP1 O1   119.3
OP1 P O5' C5' 55.2 180.0
OP1 P O1 HO1   312.0
OP1 P OP2 O5' 123.8 233.4
OP1 P OP2 O1   126.2
O5' P OP2 O1   252.9
OP2 P O5' C5' 185.8 53.2
OP2 P O1 HO1   78.5
OP1 P O5' OP2 229.3 126.9
OP1 P O5' O1   234.2
OP2 P O5' O1   107.4
O5' P OP2 HO2P 8.9 175.4
O5' P O1 HO1   186.2
P O5' C5' C4' 177.9 180.0
P O5' C5' H5' 57.8 300.1
P O5' C5' H5'' 297.9 59.9
OP1 P O1 OP2   233.5
OP1 P O1 O5'   125.8
OP2 P O1 O5'   252.3
O1 P OP2 HO2P   282.5
O1 P O5' C5'   305.8
HO2P OP2 P O5' 8.9 175.4
HO2P OP2 P O1   282.5
C5' O5' P O1   305.8
C4' C5' O5' H5' 120.1 239.9
C4' C5' O5' H5'' 240.0 120.2
O5' C5' C4' O4' 281.6 62.1
O5' C5' C4' C3' 38.9 179.5
O5' C5' C4' H4' 159.6 303.8
H5' C5' O5' H5'' 119.9 240.3
O5' C5' C4' H5' 239.9 119.5
O5' C5' C4' H5'' 120.0 240.4
H5' C5' C4' H5'' 240.1 120.9
O4' C4' C5' C3' 242.7 242.6
O4' C4' C5' H4' 122.0 118.3
C5' C4' O4' C1' 140.5 148.9
C3' C4' C5' H4' 239.3 235.7
C5' C4' C3' C2' 206.8 202.9
C5' C4' C3' O3' 84.4 80.9
C5' C4' C3' H3' 326.8 319.3
O5' C5' H5' C4' 119.9 240.8
O5' C5' H5' H5'' 239.9 119.5
C4' C5' H5' H5'' 120.0 238.7
H5' C5' C4' O4' 41.6 302.6
H5' C5' C4' C3' 159.0 60.1
H5' C5' C4' H4' 279.7 184.3
O5' C5' H5'' C4' 240.2 119.3
O5' C5' H5'' H5' 120.1 240.5
C4' C5' H5'' H5' 239.9 121.3
H5'' C5' C4' O4' 161.5 181.7
H5'' C5' C4' C3' 278.8 299.1
H5'' C5' C4' H4' 39.5 63.4
O4' C4' C5' H5' 41.6 302.6
O4' C4' C5' H5'' 161.5 181.7
C5' C4' O4' C3' 121.5 122.5
C5' C4' O4' H4' 242.2 241.5
C3' C4' O4' H4' 120.6 119.0
O4' C4' C3' C2' 327.0 323.0
O4' C4' C3' O3' 204.6 201.0
O4' C4' C3' H3' 87.0 79.3
C4' O4' C1' N9 238.1 231.0
C4' O4' C1' C2' 3.1 355.0
C4' O4' C1' H1' 120.5 116.9
C3' C4' C5' H5' 159.0 60.1
C3' C4' C5' H5'' 278.8 299.1
C5' C4' C3' O4' 239.8 239.9
C5' C4' C3' H4' 117.8 122.9
O4' C4' C3' H4' 238.0 243.0
C3' C4' O4' C1' 19.0 26.4
C1' C2' C3' C4' 33.5 32.8
O2' C2' C3' C4' 276.7 275.9
C4' C3' C2' H2' 158.4 156.0
C2' C3' C4' O3' 122.4 121.9
C2' C3' C4' H3' 240.0 243.6
O3' C3' C4' H3' 117.6 121.7
C4' C3' O3' HO3' 188.9 326.3
H4' C4' C5' H5' 279.7 184.3
H4' C4' C5' H5'' 39.5 63.4
C5' C4' H4' O4' 120.5 119.3
C5' C4' H4' C3' 238.1 234.4
O4' C4' H4' C3' 117.6 115.1
H4' C4' O4' C1' 258.4 267.4
H4' C4' C3' C2' 89.0 79.9
H4' C4' C3' O3' 326.6 318.0
H4' C4' C3' H3' 209.0 196.3
C1' O4' C4' C3' 19.0 26.4
C1' O4' C4' H4' 258.4 267.4
N9 C1' O4' C2' 235.0 236.0
N9 C1' O4' H1' 117.6 114.1
O4' C1' N9 C4 228.4 34.0
O4' C1' N9 C8 47.5 213.8
C2' C1' O4' H1' 242.6 238.0
O4' C1' C2' O2' 97.5 100.1
O4' C1' C2' C3' 336.6 341.9
O4' C1' C2' H2' 215.4 219.6
O4' C1' N9 C2' 120.7 120.3
O4' C1' N9 H1' 237.8 244.0
C2' C1' N9 H1' 117.1 123.6
N9 C1' C2' O2' 218.0 221.5
N9 C1' C2' C3' 97.1 103.2
N9 C1' C2' H2' 335.9 341.0
C4 N9 C1' C8 180.9 180.1
C1' N9 C4 N3 359.2 359.8
C1' N9 C4 C5 178.9 179.9
C1' N9 C8 N7 181.2 180.0
C1' N9 C8 H8 1.2 0.1
C4' C3' C2' C1' 33.5 32.8
O4' C1' C2' N9 239.6 238.7
O4' C1' C2' H1' 122.2 119.2
N9 C1' C2' H1' 242.7 240.5
C2' C1' N9 C4 107.7 273.7
C2' C1' N9 C8 286.8 93.5
O2' C2' C1' C3' 120.9 118.2
O2' C2' C1' H2' 242.1 240.5
C1' C2' O2' HO2' 265.9 54.7
C3' C2' C1' H2' 121.2 122.2
C1' C2' C3' O3' 150.4 153.8
C1' C2' C3' H3' 268.3 275.9
O4' C1' H1' N9 118.4 116.8
O4' C1' H1' C2' 241.4 241.2
N9 C1' H1' C2' 123.0 124.3
H1' C1' N9 C4 350.6 150.0
H1' C1' N9 C8 169.7 329.9
H1' C1' C2' O2' 335.3 340.9
H1' C1' C2' C3' 214.4 222.7
H1' C1' C2' H2' 93.2 100.5
C4 N9 C1' C2' 107.7 273.7
C4 N9 C1' H1' 350.6 150.0
C1' N9 C4 C8 179.3 179.9
C4 N9 C8 N7 0.4 359.9
C4 N9 C8 H8 180.4 180.0
N3 C4 N9 C5 180.2 179.9
N9 C4 N3 C2 179.7 180.1
N9 C4 C5 C6 180.1 179.9
N9 C4 C5 N7 0.2 360.0
C8 N9 C1' C2' 286.8 93.5
C8 N9 C1' H1' 169.7 329.9
C1' N9 C8 C4 180.7 180.1
C8 N9 C4 N3 179.9 179.9
C8 N9 C4 C5 359.7 0.1
C5 N7 C8 N9 359.7 0.1
N7 C8 N9 H8 180.0 179.9
N3 C4 N9 C8 179.9 179.9
N9 C4 N3 C5 179.7 180.2
N3 C4 C5 C6 359.9 0.0
N3 C4 C5 N7 179.9 180.1
C4 N3 C2 N2 181.4 180.0
C4 N3 C2 N1 0.1 0.1
C5 C4 N9 C8 359.7 0.1
N9 C4 C5 N3 180.2 179.9
C5 C4 N3 C2 360.0 359.9
N1 C6 C5 C4 0.1 0.0
C4 C5 C6 H6 180.1 180.0
C6 C5 C4 N7 180.0 179.9
C4 C5 N7 C8 0.1 360.0
C2 N3 C4 C5 360.0 359.9
N2 C2 N3 N1 181.3 179.9
N3 C2 N2 HN21 360.0 320.5
N3 C2 N2 HN22 180.0 146.7
N3 C2 N1 C6 359.9 360.0
N3 C2 N2 N1 178.9 180.1
N2 C2 N1 C6 178.6 180.1
HN21 N2 C2 HN22 180.0 173.7
N3 C2 N1 N2 181.3 179.9
N1 C2 N2 HN21 181.1 140.4
N1 C2 N2 HN22 1.1 326.7
C2 N1 C6 C5 360.0 359.9
C2 N1 C6 H6 180.0 180.0
HN21 N2 C2 N1 181.1 140.4
C2 N2 HN21 HN22 180.0 186.4
HN22 N2 C2 N1 1.1 326.7
C2 N2 HN22 HN21 180.0 173.6
C4 C5 C6 N1 0.1 0.0
C5 C6 N1 H6 180.0 179.9
N1 C6 C5 N7 180.0 180.0
C4 C5 C6 N7 180.1 180.1
N1 C6 C5 H6 180.0 180.1
C6 C5 N7 C8 180.1 180.0
N1 C6 H6 C5 180.0 179.9
H6 C6 C5 N7 0.1 359.9
N9 C8 N7 C5 359.7 0.1
C4 C5 N7 C6 179.9 179.9
N7 C5 C6 H6 0.1 359.9
C5 N7 C8 H8 179.7 180.0
N9 C8 N7 H8 180.0 180.1
N9 C8 H8 N7 180.0 179.9
C4' C3' C2' O2' 276.7 275.9
O2' C2' C1' H1' 335.3 340.9
C1' C2' O2' C3' 247.1 247.1
C1' C2' O2' H2' 125.2 123.8
C3' C2' O2' H2' 238.1 236.7
O2' C2' C3' O3' 33.6 36.9
O2' C2' C3' H3' 151.5 159.0
C2' C3' C4' H4' 89.0 79.9
C4' C3' C2' O3' 243.1 239.0
C4' C3' C2' H3' 125.2 116.9
C3' C2' C1' H1' 214.4 222.7
C1' C2' C3' O2' 116.9 116.8
C1' C2' C3' H2' 235.1 236.8
O2' C2' C3' H2' 118.3 120.0
C3' C2' O2' HO2' 18.7 167.5
O3' C3' C2' H3' 242.1 237.9
C2' C3' O3' HO3' 74.8 211.1
H2' C2' C1' H1' 93.2 100.5
C1' C2' H2' O2' 240.0 239.2
C1' C2' H2' C3' 116.1 116.7
O2' C2' H2' C3' 236.1 237.5
H2' C2' O2' HO2' 140.6 290.8
H2' C2' C3' O3' 275.3 276.9
H2' C2' C3' H3' 33.2 39.0
HO2' O2' C2' C3' 18.7 167.5
HO2' O2' C2' H2' 140.6 290.8
O3' C3' C4' H4' 326.6 318.0
C4' C3' O3' C2' 114.1 115.2
C4' C3' O3' H3' 234.6 237.6
O3' C3' C2' H2' 275.3 276.9
C2' C3' O3' H3' 120.5 122.4
H3' C3' C4' H4' 209.0 196.3
C4' C3' H3' C2' 243.6 248.3
C4' C3' H3' O3' 119.2 123.5
H3' C3' C2' H2' 33.2 39.0
C2' C3' H3' O3' 235.5 235.3
H3' C3' O3' HO3' 314.3 88.7
HO3' O3' C3' H3' 314.3 88.7