PDB Chemical Component MTU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MTU
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
OP1 |
1.491 |
1.501 |
P |
OP2 |
1.493 |
1.617 |
P |
O5' |
1.588 |
1.619 |
P |
O1 |
|
1.617 |
OP2 |
HO2P |
0.950 |
0.981 |
O5' |
C5' |
1.422 |
1.417 |
C5' |
C4' |
1.504 |
1.517 |
C5' |
H5' |
1.100 |
1.091 |
C5' |
H5'' |
1.100 |
1.091 |
C4' |
O4' |
1.448 |
1.437 |
C4' |
C3' |
1.515 |
1.519 |
C4' |
H4' |
1.100 |
1.097 |
O4' |
C1' |
1.412 |
1.444 |
C1' |
N9 |
1.463 |
1.464 |
C1' |
C2' |
1.531 |
1.529 |
C1' |
H1' |
1.100 |
1.095 |
N9 |
C4 |
1.372 |
1.367 |
N9 |
C8 |
1.376 |
1.371 |
C4 |
N3 |
1.344 |
1.342 |
C4 |
C5 |
1.384 |
1.385 |
N3 |
C2 |
1.328 |
1.350 |
C2 |
N2 |
1.291 |
1.414 |
C2 |
N1 |
1.340 |
1.355 |
N2 |
HN21 |
1.000 |
0.998 |
N2 |
HN22 |
1.000 |
0.998 |
N1 |
C6 |
1.352 |
1.355 |
C6 |
C5 |
1.401 |
1.391 |
C6 |
H6 |
1.080 |
1.082 |
C5 |
N7 |
1.387 |
1.373 |
N7 |
C8 |
1.310 |
1.317 |
C8 |
H8 |
1.080 |
1.081 |
C2' |
O2' |
1.412 |
1.426 |
C2' |
C3' |
1.527 |
1.517 |
C2' |
H2' |
1.100 |
1.095 |
O2' |
HO2' |
0.950 |
0.974 |
C3' |
O3' |
1.424 |
1.412 |
C3' |
H3' |
1.101 |
1.097 |
O3' |
HO3' |
0.950 |
0.969 |
O1 |
HO1 |
|
0.980 |
Bond Angles for MTU
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
119.8 |
115.3 |
OP1 |
P |
O5' |
108.1 |
115.0 |
OP1 |
P |
O1 |
|
115.0 |
OP2 |
P |
O5' |
107.6 |
103.7 |
OP2 |
P |
O1 |
|
103.3 |
P |
OP2 |
HO2P |
109.5 |
118.9 |
O5' |
P |
O1 |
|
102.9 |
P |
O5' |
C5' |
120.9 |
118.5 |
P |
O1 |
HO1 |
|
119.0 |
O5' |
C5' |
C4' |
109.3 |
108.7 |
O5' |
C5' |
H5' |
109.6 |
109.1 |
O5' |
C5' |
H5'' |
109.6 |
109.2 |
C4' |
C5' |
H5' |
109.6 |
110.1 |
C4' |
C5' |
H5'' |
109.5 |
110.1 |
C5' |
C4' |
O4' |
110.3 |
109.8 |
C5' |
C4' |
C3' |
112.4 |
113.5 |
C5' |
C4' |
H4' |
105.7 |
108.7 |
H5' |
C5' |
H5'' |
109.3 |
109.6 |
O4' |
C4' |
C3' |
105.4 |
105.2 |
O4' |
C4' |
H4' |
112.6 |
108.3 |
C4' |
O4' |
C1' |
109.6 |
108.3 |
C3' |
C4' |
H4' |
110.6 |
111.2 |
C4' |
C3' |
C2' |
102.7 |
102.2 |
C4' |
C3' |
O3' |
107.7 |
112.2 |
C4' |
C3' |
H3' |
117.1 |
110.2 |
O4' |
C1' |
N9 |
107.7 |
109.4 |
O4' |
C1' |
C2' |
108.1 |
107.6 |
O4' |
C1' |
H1' |
113.7 |
108.2 |
N9 |
C1' |
C2' |
115.1 |
113.7 |
N9 |
C1' |
H1' |
106.4 |
105.2 |
C1' |
N9 |
C4 |
125.9 |
126.9 |
C1' |
N9 |
C8 |
128.3 |
126.1 |
C2' |
C1' |
H1' |
106.0 |
112.6 |
C1' |
C2' |
O2' |
108.6 |
109.3 |
C1' |
C2' |
C3' |
101.8 |
102.9 |
C1' |
C2' |
H2' |
116.6 |
114.0 |
C4 |
N9 |
C8 |
105.8 |
107.0 |
N9 |
C4 |
N3 |
127.1 |
127.5 |
N9 |
C4 |
C5 |
105.8 |
105.3 |
N9 |
C8 |
N7 |
113.7 |
112.1 |
N9 |
C8 |
H8 |
123.1 |
122.3 |
N3 |
C4 |
C5 |
127.1 |
127.2 |
C4 |
N3 |
C2 |
110.5 |
110.4 |
C4 |
C5 |
C6 |
116.9 |
116.9 |
C4 |
C5 |
N7 |
110.8 |
110.7 |
N3 |
C2 |
N2 |
116.2 |
115.6 |
N3 |
C2 |
N1 |
129.1 |
128.9 |
N2 |
C2 |
N1 |
114.6 |
115.5 |
C2 |
N2 |
HN21 |
124.7 |
119.0 |
C2 |
N2 |
HN22 |
110.6 |
119.0 |
C2 |
N1 |
C6 |
118.8 |
117.5 |
HN21 |
N2 |
HN22 |
124.7 |
121.7 |
N1 |
C6 |
C5 |
117.6 |
119.1 |
N1 |
C6 |
H6 |
121.2 |
117.0 |
C5 |
C6 |
H6 |
121.2 |
124.0 |
C6 |
C5 |
N7 |
132.3 |
132.4 |
C5 |
N7 |
C8 |
103.9 |
104.9 |
N7 |
C8 |
H8 |
123.2 |
125.6 |
O2' |
C2' |
C3' |
114.3 |
111.2 |
O2' |
C2' |
H2' |
104.7 |
106.9 |
C2' |
O2' |
HO2' |
109.5 |
107.3 |
C3' |
C2' |
H2' |
111.2 |
112.6 |
C2' |
C3' |
O3' |
115.5 |
113.5 |
C2' |
C3' |
H3' |
109.5 |
109.5 |
O3' |
C3' |
H3' |
104.7 |
109.0 |
C3' |
O3' |
HO3' |
109.5 |
106.4 |
Torsion Angles for MTU
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP1 |
O5' |
236.4 |
120.7 |
OP2 |
P |
OP1 |
O1 |
|
240.0 |
OP1 |
P |
OP2 |
HO2P |
132.8 |
48.7 |
O5' |
P |
OP1 |
O1 |
|
119.3 |
OP1 |
P |
O5' |
C5' |
55.2 |
180.0 |
OP1 |
P |
O1 |
HO1 |
|
312.0 |
OP1 |
P |
OP2 |
O5' |
123.8 |
233.4 |
OP1 |
P |
OP2 |
O1 |
|
126.2 |
O5' |
P |
OP2 |
O1 |
|
252.9 |
OP2 |
P |
O5' |
C5' |
185.8 |
53.2 |
OP2 |
P |
O1 |
HO1 |
|
78.5 |
OP1 |
P |
O5' |
OP2 |
229.3 |
126.9 |
OP1 |
P |
O5' |
O1 |
|
234.2 |
OP2 |
P |
O5' |
O1 |
|
107.4 |
O5' |
P |
OP2 |
HO2P |
8.9 |
175.4 |
O5' |
P |
O1 |
HO1 |
|
186.2 |
P |
O5' |
C5' |
C4' |
177.9 |
180.0 |
P |
O5' |
C5' |
H5' |
57.8 |
300.1 |
P |
O5' |
C5' |
H5'' |
297.9 |
59.9 |
OP1 |
P |
O1 |
OP2 |
|
233.5 |
OP1 |
P |
O1 |
O5' |
|
125.8 |
OP2 |
P |
O1 |
O5' |
|
252.3 |
O1 |
P |
OP2 |
HO2P |
|
282.5 |
O1 |
P |
O5' |
C5' |
|
305.8 |
HO2P |
OP2 |
P |
O5' |
8.9 |
175.4 |
HO2P |
OP2 |
P |
O1 |
|
282.5 |
C5' |
O5' |
P |
O1 |
|
305.8 |
C4' |
C5' |
O5' |
H5' |
120.1 |
239.9 |
C4' |
C5' |
O5' |
H5'' |
240.0 |
120.2 |
O5' |
C5' |
C4' |
O4' |
281.6 |
62.1 |
O5' |
C5' |
C4' |
C3' |
38.9 |
179.5 |
O5' |
C5' |
C4' |
H4' |
159.6 |
303.8 |
H5' |
C5' |
O5' |
H5'' |
119.9 |
240.3 |
O5' |
C5' |
C4' |
H5' |
239.9 |
119.5 |
O5' |
C5' |
C4' |
H5'' |
120.0 |
240.4 |
H5' |
C5' |
C4' |
H5'' |
240.1 |
120.9 |
O4' |
C4' |
C5' |
C3' |
242.7 |
242.6 |
O4' |
C4' |
C5' |
H4' |
122.0 |
118.3 |
C5' |
C4' |
O4' |
C1' |
140.5 |
148.9 |
C3' |
C4' |
C5' |
H4' |
239.3 |
235.7 |
C5' |
C4' |
C3' |
C2' |
206.8 |
202.9 |
C5' |
C4' |
C3' |
O3' |
84.4 |
80.9 |
C5' |
C4' |
C3' |
H3' |
326.8 |
319.3 |
O5' |
C5' |
H5' |
C4' |
119.9 |
240.8 |
O5' |
C5' |
H5' |
H5'' |
239.9 |
119.5 |
C4' |
C5' |
H5' |
H5'' |
120.0 |
238.7 |
H5' |
C5' |
C4' |
O4' |
41.6 |
302.6 |
H5' |
C5' |
C4' |
C3' |
159.0 |
60.1 |
H5' |
C5' |
C4' |
H4' |
279.7 |
184.3 |
O5' |
C5' |
H5'' |
C4' |
240.2 |
119.3 |
O5' |
C5' |
H5'' |
H5' |
120.1 |
240.5 |
C4' |
C5' |
H5'' |
H5' |
239.9 |
121.3 |
H5'' |
C5' |
C4' |
O4' |
161.5 |
181.7 |
H5'' |
C5' |
C4' |
C3' |
278.8 |
299.1 |
H5'' |
C5' |
C4' |
H4' |
39.5 |
63.4 |
O4' |
C4' |
C5' |
H5' |
41.6 |
302.6 |
O4' |
C4' |
C5' |
H5'' |
161.5 |
181.7 |
C5' |
C4' |
O4' |
C3' |
121.5 |
122.5 |
C5' |
C4' |
O4' |
H4' |
242.2 |
241.5 |
C3' |
C4' |
O4' |
H4' |
120.6 |
119.0 |
O4' |
C4' |
C3' |
C2' |
327.0 |
323.0 |
O4' |
C4' |
C3' |
O3' |
204.6 |
201.0 |
O4' |
C4' |
C3' |
H3' |
87.0 |
79.3 |
C4' |
O4' |
C1' |
N9 |
238.1 |
231.0 |
C4' |
O4' |
C1' |
C2' |
3.1 |
355.0 |
C4' |
O4' |
C1' |
H1' |
120.5 |
116.9 |
C3' |
C4' |
C5' |
H5' |
159.0 |
60.1 |
C3' |
C4' |
C5' |
H5'' |
278.8 |
299.1 |
C5' |
C4' |
C3' |
O4' |
239.8 |
239.9 |
C5' |
C4' |
C3' |
H4' |
117.8 |
122.9 |
O4' |
C4' |
C3' |
H4' |
238.0 |
243.0 |
C3' |
C4' |
O4' |
C1' |
19.0 |
26.4 |
C1' |
C2' |
C3' |
C4' |
33.5 |
32.8 |
O2' |
C2' |
C3' |
C4' |
276.7 |
275.9 |
C4' |
C3' |
C2' |
H2' |
158.4 |
156.0 |
C2' |
C3' |
C4' |
O3' |
122.4 |
121.9 |
C2' |
C3' |
C4' |
H3' |
240.0 |
243.6 |
O3' |
C3' |
C4' |
H3' |
117.6 |
121.7 |
C4' |
C3' |
O3' |
HO3' |
188.9 |
326.3 |
H4' |
C4' |
C5' |
H5' |
279.7 |
184.3 |
H4' |
C4' |
C5' |
H5'' |
39.5 |
63.4 |
C5' |
C4' |
H4' |
O4' |
120.5 |
119.3 |
C5' |
C4' |
H4' |
C3' |
238.1 |
234.4 |
O4' |
C4' |
H4' |
C3' |
117.6 |
115.1 |
H4' |
C4' |
O4' |
C1' |
258.4 |
267.4 |
H4' |
C4' |
C3' |
C2' |
89.0 |
79.9 |
H4' |
C4' |
C3' |
O3' |
326.6 |
318.0 |
H4' |
C4' |
C3' |
H3' |
209.0 |
196.3 |
C1' |
O4' |
C4' |
C3' |
19.0 |
26.4 |
C1' |
O4' |
C4' |
H4' |
258.4 |
267.4 |
N9 |
C1' |
O4' |
C2' |
235.0 |
236.0 |
N9 |
C1' |
O4' |
H1' |
117.6 |
114.1 |
O4' |
C1' |
N9 |
C4 |
228.4 |
34.0 |
O4' |
C1' |
N9 |
C8 |
47.5 |
213.8 |
C2' |
C1' |
O4' |
H1' |
242.6 |
238.0 |
O4' |
C1' |
C2' |
O2' |
97.5 |
100.1 |
O4' |
C1' |
C2' |
C3' |
336.6 |
341.9 |
O4' |
C1' |
C2' |
H2' |
215.4 |
219.6 |
O4' |
C1' |
N9 |
C2' |
120.7 |
120.3 |
O4' |
C1' |
N9 |
H1' |
237.8 |
244.0 |
C2' |
C1' |
N9 |
H1' |
117.1 |
123.6 |
N9 |
C1' |
C2' |
O2' |
218.0 |
221.5 |
N9 |
C1' |
C2' |
C3' |
97.1 |
103.2 |
N9 |
C1' |
C2' |
H2' |
335.9 |
341.0 |
C4 |
N9 |
C1' |
C8 |
180.9 |
180.1 |
C1' |
N9 |
C4 |
N3 |
359.2 |
359.8 |
C1' |
N9 |
C4 |
C5 |
178.9 |
179.9 |
C1' |
N9 |
C8 |
N7 |
181.2 |
180.0 |
C1' |
N9 |
C8 |
H8 |
1.2 |
0.1 |
C4' |
C3' |
C2' |
C1' |
33.5 |
32.8 |
O4' |
C1' |
C2' |
N9 |
239.6 |
238.7 |
O4' |
C1' |
C2' |
H1' |
122.2 |
119.2 |
N9 |
C1' |
C2' |
H1' |
242.7 |
240.5 |
C2' |
C1' |
N9 |
C4 |
107.7 |
273.7 |
C2' |
C1' |
N9 |
C8 |
286.8 |
93.5 |
O2' |
C2' |
C1' |
C3' |
120.9 |
118.2 |
O2' |
C2' |
C1' |
H2' |
242.1 |
240.5 |
C1' |
C2' |
O2' |
HO2' |
265.9 |
54.7 |
C3' |
C2' |
C1' |
H2' |
121.2 |
122.2 |
C1' |
C2' |
C3' |
O3' |
150.4 |
153.8 |
C1' |
C2' |
C3' |
H3' |
268.3 |
275.9 |
O4' |
C1' |
H1' |
N9 |
118.4 |
116.8 |
O4' |
C1' |
H1' |
C2' |
241.4 |
241.2 |
N9 |
C1' |
H1' |
C2' |
123.0 |
124.3 |
H1' |
C1' |
N9 |
C4 |
350.6 |
150.0 |
H1' |
C1' |
N9 |
C8 |
169.7 |
329.9 |
H1' |
C1' |
C2' |
O2' |
335.3 |
340.9 |
H1' |
C1' |
C2' |
C3' |
214.4 |
222.7 |
H1' |
C1' |
C2' |
H2' |
93.2 |
100.5 |
C4 |
N9 |
C1' |
C2' |
107.7 |
273.7 |
C4 |
N9 |
C1' |
H1' |
350.6 |
150.0 |
C1' |
N9 |
C4 |
C8 |
179.3 |
179.9 |
C4 |
N9 |
C8 |
N7 |
0.4 |
359.9 |
C4 |
N9 |
C8 |
H8 |
180.4 |
180.0 |
N3 |
C4 |
N9 |
C5 |
180.2 |
179.9 |
N9 |
C4 |
N3 |
C2 |
179.7 |
180.1 |
N9 |
C4 |
C5 |
C6 |
180.1 |
179.9 |
N9 |
C4 |
C5 |
N7 |
0.2 |
360.0 |
C8 |
N9 |
C1' |
C2' |
286.8 |
93.5 |
C8 |
N9 |
C1' |
H1' |
169.7 |
329.9 |
C1' |
N9 |
C8 |
C4 |
180.7 |
180.1 |
C8 |
N9 |
C4 |
N3 |
179.9 |
179.9 |
C8 |
N9 |
C4 |
C5 |
359.7 |
0.1 |
C5 |
N7 |
C8 |
N9 |
359.7 |
0.1 |
N7 |
C8 |
N9 |
H8 |
180.0 |
179.9 |
N3 |
C4 |
N9 |
C8 |
179.9 |
179.9 |
N9 |
C4 |
N3 |
C5 |
179.7 |
180.2 |
N3 |
C4 |
C5 |
C6 |
359.9 |
0.0 |
N3 |
C4 |
C5 |
N7 |
179.9 |
180.1 |
C4 |
N3 |
C2 |
N2 |
181.4 |
180.0 |
C4 |
N3 |
C2 |
N1 |
0.1 |
0.1 |
C5 |
C4 |
N9 |
C8 |
359.7 |
0.1 |
N9 |
C4 |
C5 |
N3 |
180.2 |
179.9 |
C5 |
C4 |
N3 |
C2 |
360.0 |
359.9 |
N1 |
C6 |
C5 |
C4 |
0.1 |
0.0 |
C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
C6 |
C5 |
C4 |
N7 |
180.0 |
179.9 |
C4 |
C5 |
N7 |
C8 |
0.1 |
360.0 |
C2 |
N3 |
C4 |
C5 |
360.0 |
359.9 |
N2 |
C2 |
N3 |
N1 |
181.3 |
179.9 |
N3 |
C2 |
N2 |
HN21 |
360.0 |
320.5 |
N3 |
C2 |
N2 |
HN22 |
180.0 |
146.7 |
N3 |
C2 |
N1 |
C6 |
359.9 |
360.0 |
N3 |
C2 |
N2 |
N1 |
178.9 |
180.1 |
N2 |
C2 |
N1 |
C6 |
178.6 |
180.1 |
HN21 |
N2 |
C2 |
HN22 |
180.0 |
173.7 |
N3 |
C2 |
N1 |
N2 |
181.3 |
179.9 |
N1 |
C2 |
N2 |
HN21 |
181.1 |
140.4 |
N1 |
C2 |
N2 |
HN22 |
1.1 |
326.7 |
C2 |
N1 |
C6 |
C5 |
360.0 |
359.9 |
C2 |
N1 |
C6 |
H6 |
180.0 |
180.0 |
HN21 |
N2 |
C2 |
N1 |
181.1 |
140.4 |
C2 |
N2 |
HN21 |
HN22 |
180.0 |
186.4 |
HN22 |
N2 |
C2 |
N1 |
1.1 |
326.7 |
C2 |
N2 |
HN22 |
HN21 |
180.0 |
173.6 |
C4 |
C5 |
C6 |
N1 |
0.1 |
0.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
179.9 |
N1 |
C6 |
C5 |
N7 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
N7 |
180.1 |
180.1 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
C6 |
C5 |
N7 |
C8 |
180.1 |
180.0 |
N1 |
C6 |
H6 |
C5 |
180.0 |
179.9 |
H6 |
C6 |
C5 |
N7 |
0.1 |
359.9 |
N9 |
C8 |
N7 |
C5 |
359.7 |
0.1 |
C4 |
C5 |
N7 |
C6 |
179.9 |
179.9 |
N7 |
C5 |
C6 |
H6 |
0.1 |
359.9 |
C5 |
N7 |
C8 |
H8 |
179.7 |
180.0 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.1 |
N9 |
C8 |
H8 |
N7 |
180.0 |
179.9 |
C4' |
C3' |
C2' |
O2' |
276.7 |
275.9 |
O2' |
C2' |
C1' |
H1' |
335.3 |
340.9 |
C1' |
C2' |
O2' |
C3' |
247.1 |
247.1 |
C1' |
C2' |
O2' |
H2' |
125.2 |
123.8 |
C3' |
C2' |
O2' |
H2' |
238.1 |
236.7 |
O2' |
C2' |
C3' |
O3' |
33.6 |
36.9 |
O2' |
C2' |
C3' |
H3' |
151.5 |
159.0 |
C2' |
C3' |
C4' |
H4' |
89.0 |
79.9 |
C4' |
C3' |
C2' |
O3' |
243.1 |
239.0 |
C4' |
C3' |
C2' |
H3' |
125.2 |
116.9 |
C3' |
C2' |
C1' |
H1' |
214.4 |
222.7 |
C1' |
C2' |
C3' |
O2' |
116.9 |
116.8 |
C1' |
C2' |
C3' |
H2' |
235.1 |
236.8 |
O2' |
C2' |
C3' |
H2' |
118.3 |
120.0 |
C3' |
C2' |
O2' |
HO2' |
18.7 |
167.5 |
O3' |
C3' |
C2' |
H3' |
242.1 |
237.9 |
C2' |
C3' |
O3' |
HO3' |
74.8 |
211.1 |
H2' |
C2' |
C1' |
H1' |
93.2 |
100.5 |
C1' |
C2' |
H2' |
O2' |
240.0 |
239.2 |
C1' |
C2' |
H2' |
C3' |
116.1 |
116.7 |
O2' |
C2' |
H2' |
C3' |
236.1 |
237.5 |
H2' |
C2' |
O2' |
HO2' |
140.6 |
290.8 |
H2' |
C2' |
C3' |
O3' |
275.3 |
276.9 |
H2' |
C2' |
C3' |
H3' |
33.2 |
39.0 |
HO2' |
O2' |
C2' |
C3' |
18.7 |
167.5 |
HO2' |
O2' |
C2' |
H2' |
140.6 |
290.8 |
O3' |
C3' |
C4' |
H4' |
326.6 |
318.0 |
C4' |
C3' |
O3' |
C2' |
114.1 |
115.2 |
C4' |
C3' |
O3' |
H3' |
234.6 |
237.6 |
O3' |
C3' |
C2' |
H2' |
275.3 |
276.9 |
C2' |
C3' |
O3' |
H3' |
120.5 |
122.4 |
H3' |
C3' |
C4' |
H4' |
209.0 |
196.3 |
C4' |
C3' |
H3' |
C2' |
243.6 |
248.3 |
C4' |
C3' |
H3' |
O3' |
119.2 |
123.5 |
H3' |
C3' |
C2' |
H2' |
33.2 |
39.0 |
C2' |
C3' |
H3' |
O3' |
235.5 |
235.3 |
H3' |
C3' |
O3' |
HO3' |
314.3 |
88.7 |
HO3' |
O3' |
C3' |
H3' |
314.3 |
88.7 |