PDB Chemical Component MTH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MTH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CS S5' 1.837 1.814
CS HCS1 1.115 1.091
CS HCS2 1.115 1.090
CS HCS3 1.115 1.089
S5' C5' 1.822 1.815
C5' C4' 1.528 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.462 1.438
C4' C3' 1.512 1.542
C4' H4'1 1.115 1.090
O4' C1' 1.468 1.444
C2' O2' 1.465 1.430
C2' C3' 1.603 1.551
C2' C1' 1.578 1.550
C2' H2'1 1.115 1.090
O2' HO21 0.950 0.967
C3' O3' 1.480 1.429
C3' H3'1 1.115 1.090
O3' HO31 0.950 0.967
C1' N9 1.592 1.466
C1' H1'1 1.115 1.090
N9 C8 1.393 1.370
N9 C4 1.379 1.367
C8 C7 1.322 1.343
C8 HC81 1.103 1.081
C7 C5 1.384 1.461
C7 HC71 1.103 1.081
C5 C6 1.430 1.404
C5 C4 1.395 1.408
C6 N6 1.338 1.383
C6 N1 1.385 1.329
N6 HN61 1.020 0.970
N6 HN62 1.020 0.969
N1 C2 1.343 1.322
C2 N3 1.350 1.315
C2 HC21 1.103 1.080
N3 C4 1.363 1.332

Bond Angles for MTH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
S5' CS HCS1 116.0 109.5
S5' CS HCS2 99.8 109.5
S5' CS HCS3 115.9 109.5
CS S5' C5' 99.8 100.0
HCS1 CS HCS2 116.0 109.4
HCS1 CS HCS3 94.4 109.5
HCS2 CS HCS3 115.9 109.5
S5' C5' C4' 113.1 109.4
S5' C5' H5'1 110.8 109.4
S5' C5' H5'2 110.8 109.5
C4' C5' H5'1 110.9 109.5
C4' C5' H5'2 110.9 109.5
C5' C4' O4' 110.0 109.9
C5' C4' C3' 115.1 109.9
C5' C4' H4'1 103.8 109.9
H5'1 C5' H5'2 99.5 109.5
O4' C4' C3' 104.8 107.4
O4' C4' H4'1 114.3 109.9
C4' O4' C1' 111.9 107.0
C3' C4' H4'1 109.1 109.9
C4' C3' C2' 100.2 104.0
C4' C3' O3' 107.7 110.7
C4' C3' H3'1 117.0 110.4
O4' C1' C2' 101.5 103.5
O4' C1' N9 106.6 110.6
O4' C1' H1'1 119.5 110.6
O2' C2' C3' 113.2 110.8
O2' C2' C1' 111.8 110.9
O2' C2' H2'1 104.7 110.7
C2' O2' HO21 113.1 106.8
C3' C2' C1' 107.6 102.1
C3' C2' H2'1 109.1 111.0
C2' C3' O3' 111.6 110.6
C2' C3' H3'1 113.5 110.5
C1' C2' H2'1 110.6 111.0
C2' C1' N9 117.9 110.8
C2' C1' H1'1 108.6 110.7
O3' C3' H3'1 106.7 110.4
C3' O3' HO31 107.7 106.8
N9 C1' H1'1 103.6 110.5
C1' N9 C8 124.3 125.0
C1' N9 C4 131.0 124.9
C8 N9 C4 104.8 110.1
N9 C8 C7 113.9 109.8
N9 C8 HC81 125.3 125.1
N9 C4 C5 106.6 107.1
N9 C4 N3 125.3 134.3
C7 C8 HC81 120.7 125.0
C8 C7 C5 104.1 106.8
C8 C7 HC71 126.2 126.6
C5 C7 HC71 129.7 126.6
C7 C5 C6 133.9 135.1
C7 C5 C4 110.6 106.2
C6 C5 C4 115.6 118.6
C5 C6 N6 122.6 120.8
C5 C6 N1 117.4 118.4
C5 C4 N3 128.0 118.5
N6 C6 N1 120.1 120.8
C6 N6 HN61 107.5 120.0
C6 N6 HN62 122.5 120.0
C6 N1 C2 120.4 121.0
HN61 N6 HN62 107.6 120.0
N1 C2 N3 127.1 122.7
N1 C2 HC21 116.2 118.6
N3 C2 HC21 116.8 118.7
C2 N3 C4 111.6 120.8

Torsion Angles for MTH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HCS1 CS S5' HCS2 234.7 240.1
HCS1 CS S5' HCS3 109.4 120.1
HCS2 CS S5' HCS3 234.7 240.0
CS S5' C5' C4' 277.1 180.0
CS S5' C5' H5'1 151.9 300.0
CS S5' C5' H5'2 42.4 60.0
S5' CS HCS1 HCS2 116.5 119.9
S5' CS HCS1 HCS3 238.3 240.0
HCS1 CS S5' C5' 54.7 300.1
HCS2 CS HCS1 HCS3 121.7 120.0
S5' CS HCS2 HCS1 234.7 240.1
S5' CS HCS2 HCS3 125.3 120.0
HCS2 CS S5' C5' 180.0 60.0
HCS1 CS HCS2 HCS3 250.6 240.0
S5' CS HCS3 HCS1 121.7 120.0
S5' CS HCS3 HCS2 243.5 240.0
HCS3 CS S5' C5' 305.3 180.0
HCS1 CS HCS3 HCS2 121.7 120.0
C5' S5' CS HCS1 54.7 300.1
C5' S5' CS HCS2 180.0 60.0
C5' S5' CS HCS3 305.3 180.0
C4' C5' S5' H5'1 125.2 240.0
C4' C5' S5' H5'2 234.7 120.0
S5' C5' C4' O4' 165.1 66.7
S5' C5' C4' C3' 283.3 184.7
S5' C5' C4' H4'1 42.4 305.7
H5'1 C5' S5' H5'2 109.5 240.0
S5' C5' C4' H5'1 234.8 120.0
S5' C5' C4' H5'2 125.2 240.0
H5'1 C5' C4' H5'2 250.5 120.1
O4' C4' C5' C3' 241.8 242.1
O4' C4' C5' H4'1 122.7 121.0
C5' C4' O4' C1' 86.6 145.9
C3' C4' C5' H4'1 240.9 239.0
C5' C4' C3' C2' 274.6 238.6
C5' C4' C3' O3' 157.8 119.9
C5' C4' C3' H3'1 37.7 357.2
S5' C5' H5'1 C4' 126.5 240.0
S5' C5' H5'1 H5'2 243.3 120.0
C4' C5' H5'1 H5'2 116.8 239.9
H5'1 C5' C4' O4' 290.3 306.8
H5'1 C5' C4' C3' 48.5 64.7
H5'1 C5' C4' H4'1 167.6 185.7
S5' C5' H5'2 C4' 233.5 120.0
S5' C5' H5'2 H5'1 116.7 240.0
C4' C5' H5'2 H5'1 243.2 120.1
H5'2 C5' C4' O4' 39.9 186.7
H5'2 C5' C4' C3' 158.0 304.6
H5'2 C5' C4' H4'1 277.2 65.7
O4' C4' C5' H5'1 290.3 306.8
O4' C4' C5' H5'2 39.9 186.7
C5' C4' O4' C3' 124.3 119.5
C5' C4' O4' H4'1 243.7 239.0
C3' C4' O4' H4'1 119.4 119.5
O4' C4' C3' C2' 35.6 358.1
O4' C4' C3' O3' 278.9 239.3
O4' C4' C3' H3'1 158.8 116.7
C4' O4' C1' C2' 20.3 319.9
C4' O4' C1' N9 256.3 201.2
C4' O4' C1' H1'1 139.5 78.4
C3' C4' C5' H5'1 48.5 64.7
C3' C4' C5' H5'2 158.0 304.6
C5' C4' C3' O4' 239.0 240.5
C5' C4' C3' H4'1 116.2 121.0
O4' C4' C3' H4'1 237.2 240.5
C3' C4' O4' C1' 322.3 26.4
O2' C2' C3' C4' 211.9 220.8
C4' C3' C2' C1' 335.9 339.0
C4' C3' C2' H2'1 95.9 97.3
C2' C3' C4' O3' 116.7 118.8
C2' C3' C4' H3'1 236.8 241.4
O3' C3' C4' H3'1 120.1 122.6
C4' C3' O3' HO31 180.0 176.3
H4'1 C4' C5' H5'1 167.6 185.7
H4'1 C4' C5' H5'2 277.2 65.7
C5' C4' H4'1 O4' 119.9 121.0
C5' C4' H4'1 C3' 236.8 239.0
O4' C4' H4'1 C3' 117.0 118.0
H4'1 C4' O4' C1' 202.9 266.9
H4'1 C4' C3' C2' 158.4 117.6
H4'1 C4' C3' O3' 41.7 358.8
H4'1 C4' C3' H3'1 281.6 236.2
C1' O4' C4' C3' 322.3 26.4
C1' O4' C4' H4'1 202.9 266.9
O2' C2' C1' O4' 128.3 155.3
C3' C2' C1' O4' 3.5 37.2
O4' C1' C2' H2'1 244.5 278.8
C2' C1' O4' N9 124.0 118.7
C2' C1' O4' H1'1 240.8 241.5
N9 C1' O4' H1'1 116.8 122.8
O4' C1' N9 C8 290.7 23.6
O4' C1' N9 C4 110.0 203.2
C4' C3' C2' O2' 211.9 220.8
O4' C1' C2' O2' 128.3 155.3
C3' C2' O2' C1' 121.7 112.7
C3' C2' O2' H2'1 241.4 236.3
O2' C2' C3' O3' 325.8 339.7
O2' C2' C3' H3'1 86.4 102.3
C1' C2' O2' H2'1 119.7 123.6
O2' C2' C1' N9 244.3 273.8
O2' C2' C1' H1'1 1.6 36.8
C2' C3' C4' H4'1 158.4 117.6
C4' C3' C2' O3' 246.2 241.1
C4' C3' C2' H3'1 125.6 118.5
O4' C1' C2' C3' 3.5 37.2
O2' C2' C3' C1' 236.0 241.9
O2' C2' C3' H2'1 116.0 123.5
C3' C2' O2' HO21 180.0 292.7
C1' C2' C3' H2'1 240.0 241.7
C3' C2' C1' N9 119.5 155.7
C3' C2' C1' H1'1 236.8 278.7
O3' C3' C2' H3'1 239.4 237.4
C2' C3' O3' HO31 71.0 61.5
O4' C1' C2' N9 244.0 241.5
O4' C1' C2' H1'1 126.8 118.5
O2' C2' C1' C3' 124.8 118.1
O2' C2' C1' H2'1 243.8 236.5
C1' C2' O2' HO21 58.3 180.0
C3' C2' C1' H2'1 119.0 118.4
C1' C2' C3' O3' 89.7 97.9
C1' C2' C3' H3'1 210.4 220.4
N9 C1' C2' H1'1 242.7 237.0
C2' C1' N9 C8 177.6 269.5
C2' C1' N9 C4 356.9 89.1
O2' C2' H2'1 C3' 238.6 236.4
O2' C2' H2'1 C1' 120.5 123.6
H2'1 C2' O2' HO21 298.7 56.4
C3' C2' H2'1 C1' 241.9 247.1
H2'1 C2' C3' O3' 209.7 216.2
H2'1 C2' C3' H3'1 330.3 338.8
H2'1 C2' C1' N9 0.5 37.3
H2'1 C2' C1' H1'1 117.8 160.3
HO21 O2' C2' C3' 180.0 292.7
HO21 O2' C2' C1' 58.3 180.0
HO21 O2' C2' H2'1 298.7 56.4
O3' C3' C4' H4'1 41.7 358.8
C4' C3' O3' C2' 109.0 114.8
C4' C3' O3' H3'1 233.5 237.4
O3' C3' C2' C1' 89.7 97.9
O3' C3' C2' H2'1 209.7 216.2
C2' C3' O3' H3'1 124.5 122.6
H3'1 C3' C4' H4'1 281.6 236.2
C4' C3' H3'1 C2' 244.0 245.5
C4' C3' H3'1 O3' 120.7 122.8
H3'1 C3' C2' C1' 210.4 220.4
H3'1 C3' C2' H2'1 330.3 338.8
C2' C3' H3'1 O3' 236.7 237.4
H3'1 C3' O3' HO31 306.5 298.9
HO31 O3' C3' H3'1 306.5 298.9
O4' C1' N9 C2' 113.1 114.1
O4' C1' N9 H1'1 233.1 237.2
N9 C1' C2' H2'1 0.5 37.3
C2' C1' N9 H1'1 119.9 123.1
C8 N9 C1' C4 180.7 180.4
C1' N9 C8 C7 179.2 180.0
C1' N9 C8 HC81 359.2 359.9
C1' N9 C4 C5 181.0 179.9
C1' N9 C4 N3 0.6 0.9
O4' C1' H1'1 C2' 244.5 246.0
O4' C1' H1'1 N9 118.4 122.8
H1'1 C1' C2' H2'1 117.8 160.3
C2' C1' H1'1 N9 233.9 236.9
H1'1 C1' N9 C8 57.7 146.5
H1'1 C1' N9 C4 237.0 326.0
C8 N9 C1' H1'1 57.7 146.5
C1' N9 C8 C4 179.4 179.6
C8 N9 C4 C5 0.4 359.5
C8 N9 C4 N3 180.0 180.5
C7 C8 N9 HC81 180.0 180.1
N9 C8 C7 C5 360.0 360.0
N9 C8 C7 HC71 180.0 180.0
C4 N9 C1' H1'1 237.0 326.0
C1' N9 C4 C8 180.6 180.4
C4 N9 C8 C7 359.8 0.3
C4 N9 C8 HC81 179.8 180.3
C7 C5 C4 N9 359.5 0.4
C6 C5 C4 N9 179.4 180.2
C5 C4 N9 N3 180.5 179.0
C2 N3 C4 N9 180.7 179.5
C7 C8 N9 C4 359.8 0.3
N9 C8 C7 HC81 180.0 179.9
C5 C7 C8 HC71 180.0 180.0
C8 C7 C5 C6 180.5 180.0
C8 C7 C5 C4 0.3 359.7
HC81 C8 N9 C4 179.8 180.3
N9 C8 HC81 C7 180.0 180.1
HC81 C8 C7 C5 179.9 180.0
HC81 C8 C7 HC71 359.9 0.0
N9 C4 C5 C7 359.5 0.4
C5 C7 C8 HC81 179.9 180.0
C8 C7 C5 HC71 180.0 180.0
C6 C5 C7 C4 180.1 180.3
C7 C5 C6 N6 0.1 0.1
C7 C5 C6 N1 179.8 180.0
C7 C5 C4 N3 180.0 179.6
HC71 C7 C8 HC81 359.9 0.0
C8 C7 HC71 C5 180.0 180.0
HC71 C7 C5 C6 0.5 0.0
HC71 C7 C5 C4 180.3 179.8
N9 C4 C5 C6 179.4 180.2
C6 C5 C7 HC71 0.5 0.0
C7 C5 C6 C4 179.8 179.7
C6 C5 C4 N3 359.9 359.4
N6 C6 C5 N1 180.2 180.0
C5 C6 N6 HN61 54.7 359.9
C5 C6 N6 HN62 180.0 180.0
C5 C6 N1 C2 0.1 0.0
N9 C4 C5 N3 179.5 180.8
C4 C5 C7 HC71 180.3 179.8
C7 C5 C4 C6 180.1 180.2
C4 C5 C6 N6 180.2 180.3
C4 C5 C6 N1 360.0 0.3
C2 N3 C4 C5 0.1 0.6
N6 C6 C5 C4 180.2 180.3
C5 C6 N6 N1 179.8 180.0
N6 C6 N1 C2 179.9 180.0
HN61 N6 C6 HN62 234.7 179.9
N1 C6 C5 C4 360.0 0.3
C5 C6 N1 N6 180.2 180.0
N1 C6 N6 HN61 234.9 180.0
N1 C6 N6 HN62 0.2 0.0
C6 N1 C2 N3 359.9 0.0
C6 N1 C2 HC21 179.9 180.0
HN61 N6 C6 N1 234.9 180.0
C6 N6 HN61 HN62 133.8 180.1
HN62 N6 C6 N1 0.2 0.0
C6 N6 HN62 HN61 234.7 179.9
N3 C2 N1 HC21 180.0 180.1
N1 C2 N3 C4 0.0 359.7
N9 C4 N3 C2 180.7 179.5
C5 C4 N3 C2 0.1 0.6
N1 C2 N3 HC21 180.0 179.9
N1 C2 HC21 N3 180.0 180.0
HC21 C2 N3 C4 180.0 179.7
N9 C4 N3 C5 180.6 178.9
C4 N3 C2 HC21 180.0 179.7