PDB Chemical Component MTA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MTA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CS S5' 1.819 1.814
CS HCS1 1.116 1.090
CS HCS2 1.114 1.089
CS HCS3 1.115 1.090
S5' C5' 1.819 1.813
C5' C4' 1.516 1.529
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.089
C4' O4' 1.454 1.437
C4' C3' 1.518 1.540
C4' H4' 1.115 1.090
O4' C1' 1.454 1.443
C2' O2' 1.472 1.428
C2' C3' 1.587 1.552
C2' C1' 1.573 1.549
C2' H2' 1.116 1.090
O2' HO2' 0.950 0.967
C3' O3' 1.481 1.429
C3' H3' 1.115 1.090
O3' H3T 0.950 0.966
C1' N9 1.599 1.463
C1' H1' 1.115 1.091
N9 C8 1.387 1.363
N9 C4 1.380 1.372
C8 N7 1.320 1.301
C8 H8 1.103 1.079
N7 C5 1.382 1.355
C5 C6 1.413 1.405
C5 C4 1.389 1.404
C6 N6 1.334 1.384
C6 N1 1.365 1.328
N6 H61 1.020 0.970
N6 H62 1.021 0.970
N1 C2 1.335 1.321
C2 N3 1.335 1.316
C2 H2 1.103 1.079
N3 C4 1.349 1.329

Bond Angles for MTA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
S5' CS HCS1 100.5 109.4
S5' CS HCS2 115.6 109.5
S5' CS HCS3 115.6 109.5
CS S5' C5' 100.5 100.0
HCS1 CS HCS2 115.6 109.5
HCS1 CS HCS3 115.7 109.5
HCS2 CS HCS3 94.8 109.5
S5' C5' C4' 112.6 109.5
S5' C5' H5'1 111.0 109.4
S5' C5' H5'2 111.0 109.5
C4' C5' H5'1 111.1 109.4
C4' C5' H5'2 111.1 109.5
C5' C4' O4' 107.0 110.0
C5' C4' C3' 114.5 109.9
C5' C4' H4' 107.2 109.8
H5'1 C5' H5'2 99.3 109.5
O4' C4' C3' 107.6 107.4
O4' C4' H4' 114.2 109.8
C4' O4' C1' 110.9 107.1
C3' C4' H4' 106.6 109.9
C4' C3' C2' 100.7 104.1
C4' C3' O3' 112.1 110.8
C4' C3' H3' 114.4 110.5
O4' C1' C2' 103.0 103.5
O4' C1' N9 108.6 110.7
O4' C1' H1' 116.8 110.6
O2' C2' C3' 109.5 110.8
O2' C2' C1' 110.4 111.0
O2' C2' H2' 108.4 110.8
C2' O2' HO2' 109.5 106.9
C3' C2' C1' 108.2 102.1
C3' C2' H2' 110.6 110.9
C2' C3' O3' 112.2 110.5
C2' C3' H3' 114.4 110.5
C1' C2' H2' 109.7 110.9
C2' C1' N9 116.5 110.8
C2' C1' H1' 109.1 110.6
O3' C3' H3' 103.5 110.4
C3' O3' H3T 112.1 106.8
N9 C1' H1' 103.4 110.5
C1' N9 C8 125.2 126.3
C1' N9 C4 130.4 126.3
C8 N9 C4 104.3 107.4
N9 C8 N7 114.4 110.0
N9 C8 H8 125.0 125.0
N9 C4 C5 106.9 106.1
N9 C4 N3 125.3 134.9
N7 C8 H8 120.6 125.0
C8 N7 C5 103.8 109.4
N7 C5 C6 133.0 134.7
N7 C5 C4 110.6 107.1
C6 C5 C4 116.4 118.2
C5 C6 N6 122.6 120.8
C5 C6 N1 116.6 118.5
C5 C4 N3 127.8 119.0
N6 C6 N1 120.7 120.7
C6 N6 H61 122.7 120.1
C6 N6 H62 107.6 120.0
C6 N1 C2 120.3 121.2
H61 N6 H62 107.5 120.0
N1 C2 N3 128.3 122.4
N1 C2 H2 115.9 118.8
N3 C2 H2 115.9 118.8
C2 N3 C4 110.6 120.7

Torsion Angles for MTA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HCS1 CS S5' HCS2 234.8 240.0
HCS1 CS S5' HCS3 125.3 120.0
HCS2 CS S5' HCS3 250.5 239.9
CS S5' C5' C4' 39.2 180.0
CS S5' C5' H5'1 164.4 300.0
CS S5' C5' H5'2 273.9 60.0
S5' CS HCS1 HCS2 125.2 120.0
S5' CS HCS1 HCS3 234.7 240.0
HCS1 CS S5' C5' 180.0 60.0
HCS2 CS HCS1 HCS3 109.5 120.0
S5' CS HCS2 HCS1 243.0 240.1
S5' CS HCS2 HCS3 121.5 120.0
HCS2 CS S5' C5' 305.2 180.0
HCS1 CS HCS2 HCS3 238.5 240.0
S5' CS HCS3 HCS1 117.0 119.9
S5' CS HCS3 HCS2 238.5 239.9
HCS3 CS S5' C5' 54.8 300.0
HCS1 CS HCS3 HCS2 121.5 120.0
C5' S5' CS HCS1 180.0 60.0
C5' S5' CS HCS2 305.2 180.0
C5' S5' CS HCS3 54.8 300.0
C4' C5' S5' H5'1 234.7 240.1
C4' C5' S5' H5'2 125.3 120.1
S5' C5' C4' O4' 73.5 61.6
S5' C5' C4' C3' 192.6 179.7
S5' C5' C4' H4' 310.7 300.7
H5'1 C5' S5' H5'2 250.6 240.0
S5' C5' C4' H5'1 125.3 119.9
S5' C5' C4' H5'2 234.7 240.0
H5'1 C5' C4' H5'2 109.5 120.0
O4' C4' C5' C3' 240.9 242.0
O4' C4' C5' H4' 122.9 121.0
C5' C4' O4' C1' 90.3 145.9
C3' C4' C5' H4' 241.9 239.0
C5' C4' C3' C2' 269.5 238.5
C5' C4' C3' O3' 150.1 119.8
C5' C4' C3' H3' 32.6 357.1
S5' C5' H5'1 C4' 233.9 240.0
S5' C5' H5'1 H5'2 116.9 120.0
C4' C5' H5'1 H5'2 243.0 240.0
H5'1 C5' C4' O4' 308.3 301.7
H5'1 C5' C4' C3' 67.4 59.7
H5'1 C5' C4' H4' 185.4 180.7
S5' C5' H5'2 C4' 126.1 120.1
S5' C5' H5'2 H5'1 243.1 240.1
C4' C5' H5'2 H5'1 117.0 120.0
H5'2 C5' C4' O4' 198.8 181.7
H5'2 C5' C4' C3' 317.9 299.7
H5'2 C5' C4' H4' 75.9 60.7
O4' C4' C5' H5'1 308.3 301.7
O4' C4' C5' H5'2 198.8 181.7
C5' C4' O4' C3' 123.5 119.6
C5' C4' O4' H4' 241.6 239.0
C3' C4' O4' H4' 118.1 119.4
O4' C4' C3' C2' 28.2 358.2
O4' C4' C3' O3' 268.8 239.4
O4' C4' C3' H3' 151.4 116.7
C4' O4' C1' C2' 21.3 320.0
C4' O4' C1' N9 257.2 201.3
C4' O4' C1' H1' 140.8 78.5
C3' C4' C5' H5'1 67.4 59.7
C3' C4' C5' H5'2 317.9 299.7
C5' C4' C3' O4' 241.3 240.4
C5' C4' C3' H4' 118.4 121.0
O4' C4' C3' H4' 237.1 240.6
C3' C4' O4' C1' 326.8 26.3
O2' C2' C3' C4' 224.2 220.8
C4' C3' C2' C1' 344.6 339.0
C4' C3' C2' H2' 104.8 97.2
C2' C3' C4' O3' 119.4 118.8
C2' C3' C4' H3' 236.9 241.4
O3' C3' C4' H3' 117.4 122.7
C4' C3' O3' H3T 180.0 176.2
H4' C4' C5' H5'1 185.4 180.7
H4' C4' C5' H5'2 75.9 60.7
C5' C4' H4' O4' 118.3 121.1
C5' C4' H4' C3' 236.9 239.0
O4' C4' H4' C3' 118.6 117.9
H4' C4' O4' C1' 208.7 266.9
H4' C4' C3' C2' 151.1 117.6
H4' C4' C3' O3' 31.7 358.8
H4' C4' C3' H3' 274.3 236.1
C1' O4' C4' C3' 326.8 26.3
C1' O4' C4' H4' 208.7 266.9
O2' C2' C1' O4' 117.3 155.2
C3' C2' C1' O4' 357.5 37.0
O4' C1' C2' H2' 236.8 278.8
C2' C1' O4' N9 124.1 118.8
C2' C1' O4' H1' 240.5 241.6
N9 C1' O4' H1' 116.4 122.8
O4' C1' N9 C8 306.1 28.6
O4' C1' N9 C4 125.8 208.3
C4' C3' C2' O2' 224.2 220.8
O4' C1' C2' O2' 117.3 155.2
C3' C2' O2' C1' 119.0 112.7
C3' C2' O2' H2' 239.2 236.4
O2' C2' C3' O3' 343.6 339.8
O2' C2' C3' H3' 101.0 102.2
C1' C2' O2' H2' 120.2 123.7
O2' C2' C1' N9 236.1 273.8
O2' C2' C1' H1' 352.6 36.8
C2' C3' C4' H4' 151.1 117.6
C4' C3' C2' O3' 240.6 241.0
C4' C3' C2' H3' 123.2 118.6
O4' C1' C2' C3' 357.5 37.0
O2' C2' C3' C1' 239.6 241.7
O2' C2' C3' H2' 119.4 123.6
C3' C2' O2' HO2' 180.0 292.7
C1' C2' C3' H2' 239.8 241.8
C3' C2' C1' N9 116.3 155.7
C3' C2' C1' H1' 232.8 278.6
O3' C3' C2' H3' 242.5 237.6
C2' C3' O3' H3T 67.6 61.4
O4' C1' C2' N9 241.2 241.3
O4' C1' C2' H1' 124.7 118.4
O2' C2' C1' C3' 119.8 118.2
O2' C2' C1' H2' 240.6 236.4
C1' C2' O2' HO2' 60.9 180.0
C3' C2' C1' H2' 120.7 118.2
C1' C2' C3' O3' 104.0 98.0
C1' C2' C3' H3' 221.4 220.4
N9 C1' C2' H1' 243.5 237.1
C2' C1' N9 C8 190.5 274.4
C2' C1' N9 C4 10.1 94.1
O2' C2' H2' C3' 239.9 236.4
O2' C2' H2' C1' 120.7 123.7
H2' C2' O2' HO2' 300.7 56.3
C3' C2' H2' C1' 240.7 247.3
H2' C2' C3' O3' 224.1 216.2
H2' C2' C3' H3' 341.6 338.6
H2' C2' C1' N9 355.5 37.5
H2' C2' C1' H1' 112.0 160.4
HO2' O2' C2' C3' 180.0 292.7
HO2' O2' C2' C1' 60.9 180.0
HO2' O2' C2' H2' 300.7 56.3
O3' C3' C4' H4' 31.7 358.8
C4' C3' O3' C2' 112.5 114.8
C4' C3' O3' H3' 236.2 237.3
O3' C3' C2' C1' 104.0 98.0
O3' C3' C2' H2' 224.1 216.2
C2' C3' O3' H3' 123.8 122.5
H3' C3' C4' H4' 274.3 236.1
C4' C3' H3' C2' 244.6 245.4
C4' C3' H3' O3' 122.3 122.9
H3' C3' C2' C1' 221.4 220.4
H3' C3' C2' H2' 341.6 338.6
C2' C3' H3' O3' 237.7 237.5
H3' C3' O3' H3T 303.8 298.9
H3T O3' C3' H3' 303.8 298.9
O4' C1' N9 C2' 115.7 114.2
O4' C1' N9 H1' 235.3 237.2
N9 C1' C2' H2' 355.5 37.5
C2' C1' N9 H1' 119.6 122.9
C8 N9 C1' C4 180.3 180.3
C1' N9 C8 N7 179.6 179.9
C1' N9 C8 H8 359.6 360.0
C1' N9 C4 C5 180.5 179.9
C1' N9 C4 N3 0.3 0.7
O4' C1' H1' C2' 243.8 246.0
O4' C1' H1' N9 119.2 122.9
H1' C1' C2' H2' 112.0 160.4
C2' C1' H1' N9 235.4 236.9
H1' C1' N9 C8 70.8 151.4
H1' C1' N9 C4 250.5 331.1
C8 N9 C1' H1' 70.8 151.4
C1' N9 C8 C4 179.7 179.7
C8 N9 C4 C5 0.2 359.6
C8 N9 C4 N3 180.0 180.5
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 359.9 0.0
C4 N9 C1' H1' 250.5 331.1
C1' N9 C4 C8 180.3 180.3
C4 N9 C8 N7 359.9 0.2
C4 N9 C8 H8 179.9 180.3
N7 C5 C4 N9 359.7 0.4
C6 C5 C4 N9 179.6 180.2
C5 C4 N9 N3 180.2 179.2
C2 N3 C4 N9 180.2 179.6
N7 C8 N9 C4 359.9 0.2
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 180.3 180.0
C8 N7 C5 C4 0.2 359.7
H8 C8 N9 C4 179.9 180.3
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 179.9 180.0
N9 C4 C5 N7 359.7 0.4
C5 N7 C8 H8 179.9 180.0
C6 C5 N7 C4 180.1 180.2
N7 C5 C6 N6 0.1 0.0
N7 C5 C6 N1 180.0 179.9
N7 C5 C4 N3 179.9 179.7
N9 C4 C5 C6 179.6 180.2
N7 C5 C6 C4 179.9 179.7
C6 C5 C4 N3 359.9 359.5
N6 C6 C5 N1 180.1 180.1
C5 C6 N6 H61 180.0 180.0
C5 C6 N6 H62 54.7 360.0
C5 C6 N1 C2 360.0 0.1
N9 C4 C5 N3 179.8 180.7
N7 C5 C4 C6 180.1 180.2
C4 C5 C6 N6 180.2 180.3
C4 C5 C6 N1 0.1 0.2
C2 N3 C4 C5 360.0 0.5
N6 C6 C5 C4 180.2 180.3
C5 C6 N6 N1 179.9 179.9
N6 C6 N1 C2 179.9 180.0
H61 N6 C6 H62 125.2 180.0
N1 C6 C5 C4 0.1 0.2
C5 C6 N1 N6 180.1 180.1
N1 C6 N6 H61 0.1 0.1
N1 C6 N6 H62 234.8 180.1
C6 N1 C2 N3 359.8 359.9
C6 N1 C2 H2 179.8 179.9
H61 N6 C6 N1 0.1 0.1
C6 N6 H61 H62 234.7 180.0
H62 N6 C6 N1 234.8 180.1
C6 N6 H62 H61 133.9 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.2 359.8
N9 C4 N3 C2 180.2 179.6
C5 C4 N3 C2 360.0 0.5
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.2 179.8
N9 C4 N3 C5 180.3 179.1
C4 N3 C2 H2 180.2 179.8