PDB Chemical Component MSQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MSQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.404 |
1.323 |
| N1 |
C6 |
1.442 |
1.326 |
| C2 |
N3 |
1.405 |
1.312 |
| C2 |
H21 |
1.103 |
1.079 |
| N3 |
C4 |
1.440 |
1.343 |
| C4 |
C5 |
1.554 |
1.417 |
| C4 |
C7 |
1.477 |
1.400 |
| C5 |
C6 |
1.490 |
1.415 |
| C5 |
C10 |
1.493 |
1.399 |
| C6 |
N12 |
1.417 |
1.380 |
| C7 |
C8 |
1.500 |
1.376 |
| C7 |
H71 |
1.102 |
1.080 |
| C8 |
C9 |
1.513 |
1.402 |
| C8 |
O26 |
1.433 |
1.359 |
| C9 |
C10 |
1.503 |
1.366 |
| C9 |
O31 |
1.427 |
1.359 |
| C10 |
H101 |
1.103 |
1.080 |
| N12 |
C14 |
1.382 |
1.398 |
| N12 |
H121 |
1.019 |
0.970 |
| C14 |
C15 |
1.478 |
1.387 |
| C14 |
C19 |
1.480 |
1.390 |
| C15 |
C16 |
1.468 |
1.389 |
| C15 |
H151 |
1.103 |
1.080 |
| C16 |
C17 |
1.472 |
1.389 |
| C16 |
S21 |
1.745 |
1.761 |
| C17 |
C18 |
1.484 |
1.381 |
| C17 |
H171 |
1.104 |
1.081 |
| C18 |
C19 |
1.491 |
1.382 |
| C18 |
H181 |
1.103 |
1.080 |
| C19 |
H191 |
1.103 |
1.080 |
| S21 |
C22 |
1.827 |
1.815 |
| C22 |
H221 |
1.115 |
1.090 |
| C22 |
H222 |
1.114 |
1.090 |
| C22 |
H223 |
1.115 |
1.089 |
| O26 |
C27 |
1.353 |
1.429 |
| C27 |
H271 |
1.115 |
1.090 |
| C27 |
H272 |
1.116 |
1.089 |
| C27 |
H273 |
1.115 |
1.090 |
| O31 |
C32 |
1.441 |
1.430 |
| C32 |
H321 |
1.115 |
1.090 |
| C32 |
H322 |
1.115 |
1.090 |
| C32 |
H323 |
1.116 |
1.089 |
Bond Angles for MSQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
122.5 |
121.6 |
| N1 |
C2 |
N3 |
121.6 |
122.9 |
| N1 |
C2 |
H21 |
119.2 |
118.6 |
| N1 |
C6 |
C5 |
119.4 |
118.2 |
| N1 |
C6 |
N12 |
119.4 |
120.9 |
| N3 |
C2 |
H21 |
119.3 |
118.5 |
| C2 |
N3 |
C4 |
120.9 |
120.5 |
| N3 |
C4 |
C5 |
119.4 |
118.7 |
| N3 |
C4 |
C7 |
121.2 |
121.9 |
| C5 |
C4 |
C7 |
119.3 |
119.5 |
| C4 |
C5 |
C6 |
116.0 |
118.1 |
| C4 |
C5 |
C10 |
118.9 |
119.9 |
| C4 |
C7 |
C8 |
121.2 |
119.5 |
| C4 |
C7 |
H71 |
118.6 |
120.2 |
| C6 |
C5 |
C10 |
124.9 |
122.0 |
| C5 |
C6 |
N12 |
121.2 |
120.9 |
| C5 |
C10 |
C9 |
120.5 |
119.7 |
| C5 |
C10 |
H101 |
119.4 |
120.2 |
| C6 |
N12 |
C14 |
132.0 |
120.0 |
| C6 |
N12 |
H121 |
104.5 |
120.0 |
| C8 |
C7 |
H71 |
120.2 |
120.3 |
| C7 |
C8 |
C9 |
119.4 |
120.7 |
| C7 |
C8 |
O26 |
123.8 |
119.6 |
| C9 |
C8 |
O26 |
116.8 |
119.6 |
| C8 |
C9 |
C10 |
119.9 |
120.7 |
| C8 |
C9 |
O31 |
115.7 |
119.6 |
| C8 |
O26 |
C27 |
124.1 |
106.8 |
| C10 |
C9 |
O31 |
124.3 |
119.7 |
| C9 |
C10 |
H101 |
120.1 |
120.1 |
| C9 |
O31 |
C32 |
123.7 |
106.8 |
| C14 |
N12 |
H121 |
104.4 |
120.0 |
| N12 |
C14 |
C15 |
120.7 |
120.0 |
| N12 |
C14 |
C19 |
119.8 |
120.1 |
| C15 |
C14 |
C19 |
119.4 |
119.9 |
| C14 |
C15 |
C16 |
120.5 |
119.8 |
| C14 |
C15 |
H151 |
120.1 |
120.1 |
| C14 |
C19 |
C18 |
119.3 |
120.1 |
| C14 |
C19 |
H191 |
120.0 |
119.9 |
| C16 |
C15 |
H151 |
119.3 |
120.1 |
| C15 |
C16 |
C17 |
120.2 |
119.9 |
| C15 |
C16 |
S21 |
119.8 |
120.0 |
| C17 |
C16 |
S21 |
120.0 |
120.1 |
| C16 |
C17 |
C18 |
119.3 |
120.1 |
| C16 |
C17 |
H171 |
120.0 |
119.9 |
| C16 |
S21 |
C22 |
106.0 |
100.0 |
| C18 |
C17 |
H171 |
120.8 |
120.0 |
| C17 |
C18 |
C19 |
120.5 |
120.2 |
| C17 |
C18 |
H181 |
119.5 |
120.0 |
| C19 |
C18 |
H181 |
120.0 |
119.8 |
| C18 |
C19 |
H191 |
120.7 |
120.0 |
| S21 |
C22 |
H221 |
105.9 |
109.5 |
| S21 |
C22 |
H222 |
113.5 |
109.4 |
| S21 |
C22 |
H223 |
113.5 |
109.5 |
| H221 |
C22 |
H222 |
113.5 |
109.5 |
| H221 |
C22 |
H223 |
113.5 |
109.5 |
| H222 |
C22 |
H223 |
97.0 |
109.5 |
| O26 |
C27 |
H271 |
124.0 |
109.5 |
| O26 |
C27 |
H272 |
107.0 |
109.5 |
| O26 |
C27 |
H273 |
107.0 |
109.4 |
| H271 |
C27 |
H272 |
107.1 |
109.5 |
| H271 |
C27 |
H273 |
107.1 |
109.5 |
| H272 |
C27 |
H273 |
102.6 |
109.4 |
| O31 |
C32 |
H321 |
123.7 |
109.5 |
| O31 |
C32 |
H322 |
107.2 |
109.4 |
| O31 |
C32 |
H323 |
107.2 |
109.5 |
| H321 |
C32 |
H322 |
107.2 |
109.5 |
| H321 |
C32 |
H323 |
107.1 |
109.5 |
| H322 |
C32 |
H323 |
102.5 |
109.4 |
Torsion Angles for MSQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
357.8 |
0.1 |
| C2 |
N1 |
C6 |
N12 |
176.8 |
180.0 |
| N3 |
C2 |
N1 |
H21 |
180.1 |
179.9 |
| N1 |
C2 |
N3 |
C4 |
354.2 |
0.1 |
| C6 |
N1 |
C2 |
N3 |
4.3 |
359.9 |
| C6 |
N1 |
C2 |
H21 |
184.3 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
1.6 |
359.9 |
| N1 |
C6 |
C5 |
C10 |
176.8 |
180.1 |
| C5 |
C6 |
N1 |
N12 |
181.0 |
180.0 |
| N1 |
C6 |
N12 |
C14 |
20.7 |
354.5 |
| N1 |
C6 |
N12 |
H121 |
255.4 |
174.4 |
| N3 |
C2 |
N1 |
C6 |
4.3 |
359.9 |
| N1 |
C2 |
N3 |
H21 |
179.9 |
180.1 |
| C2 |
N3 |
C4 |
C5 |
5.1 |
359.9 |
| C2 |
N3 |
C4 |
C7 |
189.4 |
180.0 |
| H21 |
C2 |
N1 |
C6 |
184.3 |
180.0 |
| N1 |
C2 |
H21 |
N3 |
180.1 |
179.9 |
| H21 |
C2 |
N3 |
C4 |
174.2 |
180.0 |
| C4 |
N3 |
C2 |
H21 |
174.2 |
180.0 |
| C5 |
C4 |
N3 |
C7 |
175.7 |
179.9 |
| N3 |
C4 |
C5 |
C6 |
357.0 |
0.1 |
| N3 |
C4 |
C5 |
C10 |
181.4 |
179.9 |
| N3 |
C4 |
C7 |
C8 |
170.7 |
180.1 |
| N3 |
C4 |
C7 |
H71 |
350.7 |
0.0 |
| N1 |
C6 |
C5 |
C4 |
1.6 |
359.9 |
| N3 |
C4 |
C5 |
C7 |
184.2 |
180.1 |
| C5 |
C4 |
C7 |
C8 |
355.0 |
0.1 |
| C5 |
C4 |
C7 |
H71 |
175.0 |
180.1 |
| C6 |
C5 |
C4 |
C10 |
175.5 |
180.2 |
| C4 |
C5 |
C6 |
N12 |
182.6 |
180.0 |
| C4 |
C5 |
C10 |
C9 |
7.3 |
359.9 |
| C4 |
C5 |
C10 |
H101 |
187.3 |
180.0 |
| N3 |
C4 |
C7 |
C5 |
175.7 |
179.9 |
| C7 |
C4 |
C5 |
C6 |
172.8 |
180.0 |
| C7 |
C4 |
C5 |
C10 |
357.2 |
359.9 |
| C8 |
C7 |
C4 |
H71 |
180.0 |
180.0 |
| C4 |
C7 |
C8 |
C9 |
8.2 |
0.2 |
| C4 |
C7 |
C8 |
O26 |
191.6 |
180.0 |
| N1 |
C6 |
C5 |
N12 |
179.0 |
180.0 |
| C6 |
C5 |
C4 |
C7 |
172.8 |
180.0 |
| C4 |
C5 |
C6 |
C10 |
184.8 |
179.8 |
| C6 |
C5 |
C10 |
C9 |
192.2 |
179.7 |
| C6 |
C5 |
C10 |
H101 |
12.2 |
359.9 |
| C5 |
C6 |
N12 |
C14 |
199.7 |
174.5 |
| C5 |
C6 |
N12 |
H121 |
74.4 |
354.4 |
| C10 |
C5 |
C4 |
C7 |
357.2 |
359.9 |
| C4 |
C5 |
C10 |
C6 |
175.1 |
180.2 |
| C10 |
C5 |
C6 |
N12 |
357.8 |
0.1 |
| C8 |
C9 |
C10 |
C5 |
355.8 |
0.4 |
| C5 |
C10 |
C9 |
O31 |
173.6 |
180.0 |
| C9 |
C10 |
C5 |
H101 |
180.0 |
179.8 |
| N1 |
C6 |
N12 |
C5 |
181.0 |
180.0 |
| N12 |
C6 |
C5 |
C10 |
357.8 |
0.1 |
| C14 |
N12 |
C6 |
H121 |
125.3 |
180.1 |
| C6 |
N12 |
C14 |
C15 |
57.4 |
326.9 |
| C6 |
N12 |
C14 |
C19 |
239.4 |
147.2 |
| C4 |
C7 |
C8 |
H71 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
O26 |
176.6 |
180.2 |
| C7 |
C8 |
C9 |
C10 |
356.4 |
359.5 |
| C7 |
C8 |
C9 |
O31 |
178.4 |
180.0 |
| C7 |
C8 |
O26 |
C27 |
346.9 |
359.9 |
| C4 |
C7 |
H71 |
C8 |
180.0 |
180.0 |
| H71 |
C7 |
C8 |
C9 |
188.2 |
180.2 |
| H71 |
C7 |
C8 |
O26 |
11.6 |
360.0 |
| C5 |
C10 |
C9 |
C8 |
355.8 |
0.4 |
| C9 |
C8 |
C7 |
H71 |
188.2 |
180.2 |
| C7 |
C8 |
C9 |
O26 |
183.2 |
179.8 |
| C9 |
C8 |
O26 |
C27 |
170.2 |
179.7 |
| C10 |
C9 |
C8 |
O31 |
178.0 |
179.5 |
| C8 |
C9 |
C10 |
H101 |
175.8 |
180.3 |
| C8 |
C9 |
O31 |
C32 |
191.0 |
179.5 |
| O26 |
C8 |
C7 |
H71 |
11.6 |
360.0 |
| C7 |
C8 |
O26 |
C9 |
176.6 |
180.2 |
| O26 |
C8 |
C9 |
C10 |
173.2 |
179.8 |
| O26 |
C8 |
C9 |
O31 |
355.2 |
0.2 |
| C8 |
O26 |
C27 |
H271 |
180.0 |
180.0 |
| C8 |
O26 |
C27 |
H272 |
305.3 |
300.1 |
| C8 |
O26 |
C27 |
H273 |
54.7 |
60.0 |
| C5 |
C10 |
C9 |
H101 |
180.0 |
180.2 |
| C10 |
C9 |
C8 |
O26 |
173.2 |
179.8 |
| C8 |
C9 |
C10 |
O31 |
182.2 |
180.5 |
| C10 |
C9 |
O31 |
C32 |
13.1 |
360.0 |
| O31 |
C9 |
C8 |
O26 |
355.2 |
0.2 |
| C8 |
C9 |
O31 |
C10 |
177.9 |
179.5 |
| O31 |
C9 |
C10 |
H101 |
353.6 |
359.8 |
| C9 |
O31 |
C32 |
H321 |
180.0 |
180.0 |
| C9 |
O31 |
C32 |
H322 |
305.3 |
300.0 |
| C9 |
O31 |
C32 |
H323 |
54.7 |
60.0 |
| C5 |
C10 |
H101 |
C9 |
180.0 |
179.8 |
| H101 |
C10 |
C9 |
O31 |
353.6 |
359.8 |
| C6 |
N12 |
C14 |
H121 |
234.7 |
179.9 |
| C15 |
C14 |
N12 |
C19 |
178.0 |
179.7 |
| N12 |
C14 |
C15 |
C16 |
192.3 |
179.8 |
| N12 |
C14 |
C15 |
H151 |
12.4 |
0.2 |
| N12 |
C14 |
C19 |
C18 |
173.6 |
180.0 |
| N12 |
C14 |
C19 |
H191 |
353.5 |
359.9 |
| C6 |
N12 |
H121 |
C14 |
141.2 |
180.1 |
| H121 |
N12 |
C14 |
C15 |
182.7 |
147.0 |
| H121 |
N12 |
C14 |
C19 |
4.7 |
327.3 |
| C15 |
C14 |
N12 |
H121 |
182.7 |
147.0 |
| N12 |
C14 |
C15 |
C19 |
182.0 |
180.3 |
| C15 |
C14 |
C19 |
C18 |
355.6 |
0.3 |
| C15 |
C14 |
C19 |
H191 |
175.5 |
180.2 |
| C16 |
C15 |
C14 |
H151 |
179.9 |
179.5 |
| C14 |
C15 |
C16 |
C17 |
349.6 |
0.5 |
| C14 |
C15 |
C16 |
S21 |
169.3 |
180.2 |
| C19 |
C14 |
N12 |
H121 |
4.7 |
327.3 |
| N12 |
C14 |
C19 |
C15 |
178.0 |
179.7 |
| C19 |
C14 |
C15 |
C16 |
10.3 |
359.5 |
| C19 |
C14 |
C15 |
H151 |
190.4 |
179.9 |
| C17 |
C18 |
C19 |
C14 |
358.6 |
360.0 |
| C14 |
C19 |
C18 |
H181 |
178.6 |
179.9 |
| C18 |
C19 |
C14 |
H191 |
180.1 |
180.0 |
| C16 |
C15 |
C14 |
C19 |
10.3 |
359.5 |
| C14 |
C15 |
C16 |
H151 |
180.1 |
180.5 |
| C17 |
C16 |
C15 |
S21 |
180.4 |
180.3 |
| C15 |
C16 |
C17 |
C18 |
4.4 |
359.7 |
| C15 |
C16 |
C17 |
H171 |
184.4 |
179.7 |
| C15 |
C16 |
S21 |
C22 |
321.1 |
180.3 |
| H151 |
C15 |
C14 |
C19 |
190.4 |
179.9 |
| C14 |
C15 |
H151 |
C16 |
179.9 |
179.5 |
| H151 |
C15 |
C16 |
C17 |
169.6 |
180.1 |
| H151 |
C15 |
C16 |
S21 |
349.2 |
359.7 |
| C17 |
C16 |
C15 |
H151 |
169.6 |
180.1 |
| C15 |
C16 |
C17 |
S21 |
179.6 |
179.7 |
| C17 |
C16 |
S21 |
C22 |
140.8 |
360.0 |
| C18 |
C17 |
C16 |
H171 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
C19 |
1.4 |
0.0 |
| C16 |
C17 |
C18 |
H181 |
181.4 |
180.1 |
| S21 |
C16 |
C15 |
H151 |
349.2 |
359.7 |
| C15 |
C16 |
S21 |
C17 |
180.4 |
180.3 |
| S21 |
C16 |
C17 |
C18 |
184.8 |
180.0 |
| S21 |
C16 |
C17 |
H171 |
4.8 |
0.0 |
| C16 |
S21 |
C22 |
H221 |
180.0 |
180.0 |
| C16 |
S21 |
C22 |
H222 |
305.2 |
300.0 |
| C16 |
S21 |
C22 |
H223 |
54.8 |
60.0 |
| C14 |
C19 |
C18 |
C17 |
358.6 |
360.0 |
| C18 |
C17 |
C16 |
S21 |
184.8 |
180.0 |
| C16 |
C17 |
C18 |
H171 |
180.0 |
180.0 |
| C19 |
C18 |
C17 |
H181 |
180.0 |
179.9 |
| C17 |
C18 |
C19 |
H191 |
178.7 |
180.0 |
| H171 |
C17 |
C16 |
S21 |
4.8 |
0.0 |
| C16 |
C17 |
H171 |
C18 |
180.0 |
180.0 |
| H171 |
C17 |
C18 |
C19 |
181.4 |
180.0 |
| H171 |
C17 |
C18 |
H181 |
1.4 |
0.1 |
| C14 |
C19 |
C18 |
H191 |
179.9 |
180.0 |
| C19 |
C18 |
C17 |
H171 |
181.4 |
180.0 |
| C17 |
C18 |
C19 |
H181 |
180.0 |
180.1 |
| H181 |
C18 |
C17 |
H171 |
1.4 |
0.1 |
| C17 |
C18 |
H181 |
C19 |
180.0 |
179.9 |
| H181 |
C18 |
C19 |
H191 |
358.7 |
360.0 |
| C14 |
C19 |
H191 |
C18 |
180.1 |
180.0 |
| H191 |
C19 |
C18 |
H181 |
358.7 |
360.0 |
| H221 |
C22 |
S21 |
H222 |
234.7 |
240.0 |
| H221 |
C22 |
S21 |
H223 |
125.2 |
120.0 |
| H222 |
C22 |
S21 |
H223 |
250.5 |
240.0 |
| S21 |
C22 |
H221 |
H222 |
125.2 |
120.0 |
| S21 |
C22 |
H221 |
H223 |
234.8 |
240.0 |
| H222 |
C22 |
H221 |
H223 |
109.6 |
120.1 |
| S21 |
C22 |
H222 |
H221 |
238.9 |
240.0 |
| S21 |
C22 |
H222 |
H223 |
119.4 |
120.0 |
| H221 |
C22 |
H222 |
H223 |
240.5 |
239.9 |
| S21 |
C22 |
H223 |
H221 |
121.0 |
120.0 |
| S21 |
C22 |
H223 |
H222 |
240.5 |
240.0 |
| H221 |
C22 |
H223 |
H222 |
119.5 |
120.0 |
| H271 |
C27 |
O26 |
H272 |
234.8 |
239.9 |
| H271 |
C27 |
O26 |
H273 |
125.3 |
120.0 |
| H272 |
C27 |
O26 |
H273 |
250.6 |
240.1 |
| O26 |
C27 |
H271 |
H272 |
125.2 |
120.1 |
| O26 |
C27 |
H271 |
H273 |
234.7 |
240.0 |
| H272 |
C27 |
H271 |
H273 |
109.5 |
120.0 |
| O26 |
C27 |
H272 |
H271 |
225.1 |
239.9 |
| O26 |
C27 |
H272 |
H273 |
112.5 |
119.9 |
| H271 |
C27 |
H272 |
H273 |
247.4 |
240.0 |
| O26 |
C27 |
H273 |
H271 |
134.9 |
120.0 |
| O26 |
C27 |
H273 |
H272 |
247.5 |
240.0 |
| H271 |
C27 |
H273 |
H272 |
112.6 |
120.0 |
| H321 |
C32 |
O31 |
H322 |
234.7 |
240.0 |
| H321 |
C32 |
O31 |
H323 |
125.3 |
120.1 |
| H322 |
C32 |
O31 |
H323 |
250.5 |
240.1 |
| O31 |
C32 |
H321 |
H322 |
125.3 |
120.0 |
| O31 |
C32 |
H321 |
H323 |
234.7 |
239.9 |
| H322 |
C32 |
H321 |
H323 |
109.4 |
120.0 |
| O31 |
C32 |
H322 |
H321 |
225.3 |
240.0 |
| O31 |
C32 |
H322 |
H323 |
112.7 |
120.0 |
| H321 |
C32 |
H322 |
H323 |
247.4 |
239.9 |
| O31 |
C32 |
H323 |
H321 |
134.7 |
120.1 |
| O31 |
C32 |
H323 |
H322 |
247.3 |
240.1 |
| H321 |
C32 |
H323 |
H322 |
112.6 |
120.0 |