PDB Chemical Component MSO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MSO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.456 |
1.470 |
| N |
H |
1.019 |
1.008 |
| N |
H2 |
1.019 |
1.009 |
| CA |
CB |
1.532 |
1.530 |
| CA |
C |
1.532 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.518 |
1.529 |
| CB |
HB2 |
1.114 |
1.090 |
| CB |
HB3 |
1.116 |
1.089 |
| C |
O |
1.227 |
1.208 |
| C |
OXT |
1.327 |
1.342 |
| CG |
SE |
1.792 |
1.960 |
| CG |
HG2 |
1.116 |
1.090 |
| CG |
HG3 |
1.115 |
1.090 |
| SE |
OE |
1.466 |
1.553 |
| SE |
CE |
1.786 |
1.959 |
| CE |
HE1 |
1.115 |
1.091 |
| CE |
HE2 |
1.116 |
1.090 |
| CE |
HE3 |
1.115 |
1.089 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for MSO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
111.0 |
106.6 |
| CA |
N |
H2 |
111.7 |
106.7 |
| N |
CA |
CB |
111.0 |
109.4 |
| N |
CA |
C |
110.5 |
109.5 |
| N |
CA |
HA |
108.1 |
109.4 |
| H |
N |
H2 |
111.7 |
106.7 |
| CB |
CA |
C |
110.4 |
109.6 |
| CB |
CA |
HA |
108.2 |
109.5 |
| CA |
CB |
CG |
113.4 |
109.5 |
| CA |
CB |
HB2 |
110.8 |
109.4 |
| CA |
CB |
HB3 |
110.8 |
109.5 |
| C |
CA |
HA |
108.6 |
109.4 |
| CA |
C |
O |
120.7 |
120.0 |
| CA |
C |
OXT |
116.9 |
120.1 |
| CG |
CB |
HB2 |
110.8 |
109.4 |
| CG |
CB |
HB3 |
110.8 |
109.5 |
| CB |
CG |
SE |
108.3 |
109.5 |
| CB |
CG |
HG2 |
112.6 |
109.4 |
| CB |
CG |
HG3 |
112.7 |
109.5 |
| HB2 |
CB |
HB3 |
99.6 |
109.5 |
| O |
C |
OXT |
122.5 |
119.9 |
| C |
OXT |
HXT |
116.9 |
120.0 |
| SE |
CG |
HG2 |
112.6 |
109.4 |
| SE |
CG |
HG3 |
112.6 |
109.5 |
| CG |
SE |
OE |
108.6 |
95.0 |
| CG |
SE |
CE |
102.8 |
95.0 |
| HG2 |
CG |
HG3 |
97.8 |
109.5 |
| OE |
SE |
CE |
113.0 |
95.0 |
| SE |
CE |
HE1 |
102.9 |
109.5 |
| SE |
CE |
HE2 |
114.7 |
109.5 |
| SE |
CE |
HE3 |
114.8 |
109.5 |
| HE1 |
CE |
HE2 |
114.7 |
109.4 |
| HE1 |
CE |
HE3 |
114.7 |
109.5 |
| HE2 |
CE |
HE3 |
95.7 |
109.5 |
Torsion Angles for MSO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
246.2 |
| CB |
CA |
N |
C |
237.2 |
239.9 |
| CB |
CA |
N |
HA |
118.5 |
120.0 |
| N |
CA |
CB |
CG |
198.5 |
300.0 |
| N |
CA |
CB |
HB2 |
323.8 |
180.0 |
| N |
CA |
CB |
HB3 |
73.3 |
60.1 |
| C |
CA |
N |
HA |
241.3 |
240.0 |
| N |
CA |
C |
O |
146.9 |
330.0 |
| N |
CA |
C |
OXT |
327.4 |
150.0 |
| CA |
N |
H |
H2 |
234.7 |
113.8 |
| H |
N |
CA |
CB |
180.0 |
300.0 |
| H |
N |
CA |
C |
302.8 |
60.0 |
| H |
N |
CA |
HA |
61.6 |
180.0 |
| CA |
N |
H2 |
H |
124.9 |
246.3 |
| H2 |
N |
CA |
CB |
54.7 |
53.8 |
| H2 |
N |
CA |
C |
177.5 |
173.9 |
| H2 |
N |
CA |
HA |
296.3 |
293.8 |
| CB |
CA |
N |
H |
180.0 |
300.0 |
| CB |
CA |
N |
H2 |
54.7 |
53.8 |
| N |
CA |
CB |
C |
122.9 |
120.0 |
| N |
CA |
CB |
HA |
241.6 |
240.1 |
| C |
CA |
CB |
HA |
118.7 |
120.0 |
| CB |
CA |
C |
O |
270.1 |
89.9 |
| CB |
CA |
C |
OXT |
90.6 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
119.9 |
| CG |
CB |
CA |
HB3 |
125.2 |
239.9 |
| CA |
CB |
CG |
SE |
179.5 |
180.0 |
| CA |
CB |
CG |
HG2 |
304.7 |
60.1 |
| CA |
CB |
CG |
HG3 |
54.2 |
300.1 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
120.0 |
| C |
CA |
N |
H |
302.8 |
60.0 |
| C |
CA |
N |
H2 |
177.5 |
173.9 |
| N |
CA |
C |
CB |
236.8 |
240.0 |
| N |
CA |
C |
HA |
118.4 |
120.0 |
| CB |
CA |
C |
HA |
241.6 |
239.9 |
| C |
CA |
CB |
CG |
75.6 |
179.9 |
| C |
CA |
CB |
HB2 |
200.9 |
60.0 |
| C |
CA |
CB |
HB3 |
310.4 |
300.0 |
| O |
C |
CA |
OXT |
179.5 |
179.9 |
| CA |
C |
OXT |
HXT |
180.1 |
179.9 |
| HA |
CA |
N |
H |
61.6 |
180.0 |
| HA |
CA |
N |
H2 |
296.3 |
293.8 |
| N |
CA |
HA |
CB |
120.2 |
119.9 |
| N |
CA |
HA |
C |
240.0 |
240.0 |
| CB |
CA |
HA |
C |
119.8 |
120.1 |
| HA |
CA |
CB |
CG |
316.9 |
59.9 |
| HA |
CA |
CB |
HB2 |
82.2 |
300.0 |
| HA |
CA |
CB |
HB3 |
191.7 |
180.0 |
| HA |
CA |
C |
O |
28.5 |
210.0 |
| HA |
CA |
C |
OXT |
209.0 |
30.1 |
| CG |
CB |
CA |
C |
75.6 |
179.9 |
| CG |
CB |
CA |
HA |
316.9 |
59.9 |
| CA |
CB |
CG |
HB2 |
125.3 |
240.1 |
| CA |
CB |
CG |
HB3 |
234.8 |
120.1 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
240.0 |
| SE |
CG |
CB |
HG2 |
234.8 |
119.9 |
| SE |
CG |
CB |
HG3 |
125.3 |
239.9 |
| CB |
CG |
SE |
OE |
300.6 |
275.5 |
| CB |
CG |
SE |
CE |
180.6 |
180.1 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
120.0 |
| HB2 |
CB |
CA |
C |
200.9 |
60.0 |
| HB2 |
CB |
CA |
HA |
82.2 |
300.0 |
| CA |
CB |
HB2 |
CG |
233.3 |
120.0 |
| CA |
CB |
HB2 |
HB3 |
116.7 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
243.4 |
120.0 |
| HB2 |
CB |
CG |
SE |
54.2 |
299.9 |
| HB2 |
CB |
CG |
HG2 |
179.4 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
288.9 |
60.0 |
| HB3 |
CB |
CA |
C |
310.4 |
300.0 |
| HB3 |
CB |
CA |
HA |
191.7 |
180.0 |
| CA |
CB |
HB3 |
CG |
126.7 |
239.9 |
| CA |
CB |
HB3 |
HB2 |
243.3 |
119.9 |
| CG |
CB |
HB3 |
HB2 |
116.6 |
240.0 |
| HB3 |
CB |
CG |
SE |
304.7 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
69.9 |
300.0 |
| HB3 |
CB |
CG |
HG3 |
179.5 |
180.0 |
| O |
C |
CA |
HA |
28.5 |
210.0 |
| CA |
C |
O |
OXT |
180.5 |
180.1 |
| O |
C |
OXT |
HXT |
0.6 |
0.0 |
| OXT |
C |
CA |
HA |
209.0 |
30.1 |
| CA |
C |
OXT |
O |
179.5 |
179.9 |
| SE |
CG |
CB |
HB2 |
54.2 |
299.9 |
| SE |
CG |
CB |
HB3 |
304.7 |
60.0 |
| CB |
CG |
SE |
HG2 |
125.3 |
240.1 |
| CB |
CG |
SE |
HG3 |
234.7 |
120.1 |
| HG2 |
CG |
SE |
HG3 |
109.5 |
240.0 |
| OE |
SE |
CG |
CE |
120.0 |
95.5 |
| CG |
SE |
CE |
HE1 |
180.0 |
180.0 |
| CG |
SE |
CE |
HE2 |
305.2 |
300.0 |
| CG |
SE |
CE |
HE3 |
54.7 |
60.0 |
| HG2 |
CG |
CB |
HB2 |
179.4 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
69.9 |
300.0 |
| CB |
CG |
HG2 |
SE |
237.1 |
120.0 |
| CB |
CG |
HG2 |
HG3 |
118.6 |
240.0 |
| SE |
CG |
HG2 |
HG3 |
241.5 |
120.0 |
| HG2 |
CG |
SE |
OE |
175.3 |
35.5 |
| HG2 |
CG |
SE |
CE |
55.4 |
300.0 |
| HG3 |
CG |
CB |
HB2 |
288.9 |
60.0 |
| HG3 |
CG |
CB |
HB3 |
179.5 |
180.0 |
| CB |
CG |
HG3 |
SE |
122.9 |
240.0 |
| CB |
CG |
HG3 |
HG2 |
241.4 |
120.0 |
| SE |
CG |
HG3 |
HG2 |
118.5 |
240.0 |
| HG3 |
CG |
SE |
OE |
65.8 |
155.5 |
| HG3 |
CG |
SE |
CE |
305.9 |
60.0 |
| OE |
SE |
CG |
HG2 |
175.3 |
35.5 |
| OE |
SE |
CG |
HG3 |
65.8 |
155.5 |
| CG |
SE |
OE |
CE |
246.6 |
264.5 |
| OE |
SE |
CE |
HE1 |
63.1 |
84.5 |
| OE |
SE |
CE |
HE2 |
188.3 |
204.5 |
| OE |
SE |
CE |
HE3 |
297.8 |
324.5 |
| CE |
SE |
CG |
HG2 |
55.4 |
300.0 |
| CE |
SE |
CG |
HG3 |
305.9 |
60.0 |
| CG |
SE |
CE |
OE |
116.9 |
95.5 |
| HE1 |
CE |
SE |
HE2 |
234.8 |
240.1 |
| HE1 |
CE |
SE |
HE3 |
125.3 |
120.1 |
| HE2 |
CE |
SE |
HE3 |
250.5 |
240.0 |
| SE |
CE |
HE1 |
HE2 |
125.3 |
120.0 |
| SE |
CE |
HE1 |
HE3 |
234.7 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
109.4 |
120.0 |
| SE |
CE |
HE2 |
HE1 |
241.2 |
240.0 |
| SE |
CE |
HE2 |
HE3 |
120.6 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
239.4 |
240.0 |
| SE |
CE |
HE3 |
HE1 |
118.9 |
120.0 |
| SE |
CE |
HE3 |
HE2 |
239.4 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
120.5 |
119.9 |