PDB Chemical Component MSG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MSG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5' C5' 1.459 1.429
O5' H5' 0.950 0.967
C5' C4' 1.536 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.091
C4' O4' 1.476 1.445
C4' C3' 1.585 1.545
C4' H4' 1.115 1.090
O4' C1' 1.504 1.444
C1' N9 1.465 1.465
C1' C2' 1.525 1.545
C1' H1' 1.115 1.090
N9 C8 1.365 1.364
N9 C4 1.446 1.373
C8 N7 1.452 1.302
C8 H8 1.103 1.080
N7 C1 1.464 1.464
N7 C5 1.398 1.356
C1 H11 1.114 1.090
C1 H12 1.115 1.089
C1 H13 1.115 1.090
C5 C6 1.469 1.406
C5 C4 1.348 1.405
C6 S6 1.805 1.762
C6 N1 1.416 1.330
N1 C2 1.400 1.327
C2 N2 1.459 1.385
C2 N3 1.353 1.323
N2 HN21 1.020 0.970
N2 HN22 1.020 0.970
N3 C4 1.356 1.329
C2' O2' 1.465 1.430
C2' C3' 1.598 1.547
C2' H2' 1.115 1.090
O2' H2 0.950 0.966
C3' O3' 1.489 1.429
C3' H3' 1.115 1.090
O3' H1 0.950 0.967

Bond Angles for MSG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5' O5' H5' 113.7 106.8
O5' C5' C4' 113.7 109.5
O5' C5' H5'1 110.7 109.5
O5' C5' H5'2 110.7 109.4
C4' C5' H5'1 110.7 109.5
C4' C5' H5'2 110.7 109.5
C5' C4' O4' 98.9 110.4
C5' C4' C3' 117.1 110.5
C5' C4' H4' 110.4 110.4
H5'1 C5' H5'2 99.6 109.5
O4' C4' C3' 105.1 104.8
O4' C4' H4' 121.4 110.4
C4' O4' C1' 113.6 105.3
C3' C4' H4' 104.7 110.4
C4' C3' C2' 106.8 104.1
C4' C3' O3' 112.7 110.5
C4' C3' H3' 109.1 110.5
O4' C1' N9 109.5 110.4
O4' C1' C2' 107.4 104.9
O4' C1' H1' 112.5 110.4
N9 C1' C2' 113.9 110.3
N9 C1' H1' 105.7 110.3
C1' N9 C8 125.1 126.3
C1' N9 C4 127.2 126.2
C2' C1' H1' 107.9 110.4
C1' C2' O2' 107.4 110.8
C1' C2' C3' 106.5 104.0
C1' C2' H2' 114.0 110.5
C8 N9 C4 107.7 107.5
N9 C8 N7 109.1 110.0
N9 C8 H8 123.0 125.1
N9 C4 C5 106.9 106.0
N9 C4 N3 128.6 134.8
N7 C8 H8 128.0 125.0
C8 N7 C1 110.6 125.3
C8 N7 C5 104.4 109.4
C1 N7 C5 111.1 125.3
N7 C1 H11 111.8 109.5
N7 C1 H12 110.6 109.5
N7 C1 H13 111.8 109.5
N7 C5 C6 125.6 134.5
N7 C5 C4 112.1 107.2
H11 C1 H12 111.8 109.5
H11 C1 H13 98.6 109.4
H12 C1 H13 111.8 109.4
C6 C5 C4 122.3 118.3
C5 C6 S6 127.2 120.8
C5 C6 N1 110.0 118.6
C5 C4 N3 124.5 119.2
S6 C6 N1 122.8 120.7
C6 N1 C2 125.5 121.1
N1 C2 N2 119.7 118.9
N1 C2 N3 120.3 122.2
N2 C2 N3 119.9 118.9
C2 N2 HN21 108.5 120.0
C2 N2 HN22 119.7 120.0
C2 N3 C4 117.3 120.6
HN21 N2 HN22 108.6 120.0
O2' C2' C3' 113.2 110.5
O2' C2' H2' 107.5 110.4
C2' O2' H2 107.4 106.8
C3' C2' H2' 108.3 110.5
C2' C3' O3' 109.3 110.6
C2' C3' H3' 112.5 110.6
O3' C3' H3' 106.5 110.4
C3' O3' H1 112.7 106.8

Torsion Angles for MSG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C5' O5' H5'1 125.3 120.0
C4' C5' O5' H5'2 234.7 240.0
O5' C5' C4' O4' 320.6 66.5
O5' C5' C4' C3' 72.7 181.8
O5' C5' C4' H4' 192.3 304.2
H5'1 C5' O5' H5'2 109.4 120.0
H5' O5' C5' C4' 180.0 179.9
H5' O5' C5' H5'1 54.7 59.9
H5' O5' C5' H5'2 305.3 299.9
C4' C5' O5' H5' 180.0 179.9
O5' C5' C4' H5'1 234.7 240.0
O5' C5' C4' H5'2 125.2 120.0
H5'1 C5' C4' H5'2 250.5 240.0
O4' C4' C5' C3' 247.9 244.6
O4' C4' C5' H4' 128.3 122.3
C5' C4' O4' C1' 113.1 159.5
C3' C4' C5' H4' 240.4 237.6
C5' C4' C3' C2' 259.0 217.1
C5' C4' C3' O3' 138.9 98.4
C5' C4' C3' H3' 20.8 335.8
H5'1 C5' O5' H5' 54.7 59.9
O5' C5' H5'1 C4' 127.0 120.0
O5' C5' H5'1 H5'2 243.5 240.0
C4' C5' H5'1 H5'2 116.5 120.0
H5'1 C5' C4' O4' 85.9 186.5
H5'1 C5' C4' C3' 198.0 301.9
H5'1 C5' C4' H4' 317.6 64.2
H5'2 C5' O5' H5' 305.3 299.9
O5' C5' H5'2 C4' 233.1 240.0
O5' C5' H5'2 H5'1 116.5 120.0
C4' C5' H5'2 H5'1 243.5 240.0
H5'2 C5' C4' O4' 195.4 306.5
H5'2 C5' C4' C3' 307.5 61.8
H5'2 C5' C4' H4' 67.0 184.2
O4' C4' C5' H5'1 85.9 186.5
O4' C4' C5' H5'2 195.4 306.5
C5' C4' O4' C3' 121.3 118.9
C5' C4' O4' H4' 239.5 237.7
C3' C4' O4' H4' 118.2 118.8
O4' C4' C3' C2' 7.6 335.9
O4' C4' C3' O3' 247.5 217.2
O4' C4' C3' H3' 129.4 94.7
C4' O4' C1' N9 241.4 200.7
C4' O4' C1' C2' 5.5 319.5
C4' O4' C1' H1' 124.1 78.4
C3' C4' C5' H5'1 198.0 301.9
C3' C4' C5' H5'2 307.5 61.8
C5' C4' C3' O4' 251.4 241.1
C5' C4' C3' H4' 122.5 122.4
O4' C4' C3' H4' 231.1 241.2
C3' C4' O4' C1' 351.8 40.5
C1' C2' C3' C4' 355.5 0.1
O2' C2' C3' C4' 237.6 241.2
C4' C3' C2' H2' 118.5 118.7
C2' C3' C4' O3' 120.1 118.7
C2' C3' C4' H3' 238.2 241.2
O3' C3' C4' H3' 118.1 122.5
C4' C3' O3' H1 180.0 298.6
H4' C4' C5' H5'1 317.6 64.2
H4' C4' C5' H5'2 67.0 184.2
C5' C4' H4' O4' 114.8 122.3
C5' C4' H4' C3' 233.2 237.6
O4' C4' H4' C3' 118.4 115.3
H4' C4' O4' C1' 233.6 281.7
H4' C4' C3' C2' 136.5 94.7
H4' C4' C3' O3' 16.4 336.0
H4' C4' C3' H3' 258.3 213.5
C1' O4' C4' C3' 351.8 40.5
C1' O4' C4' H4' 233.6 281.7
N9 C1' O4' C2' 235.9 241.2
N9 C1' O4' H1' 117.3 122.3
O4' C1' N9 C8 343.0 22.0
O4' C1' N9 C4 163.2 202.1
C2' C1' O4' H1' 241.4 241.1
O4' C1' C2' O2' 121.4 142.6
O4' C1' C2' C3' 359.7 23.9
O4' C1' C2' H2' 240.3 265.3
O4' C1' N9 C2' 120.2 115.5
O4' C1' N9 H1' 238.5 237.7
C2' C1' N9 H1' 118.3 122.2
N9 C1' C2' O2' 242.8 261.4
N9 C1' C2' C3' 121.1 142.7
N9 C1' C2' H2' 1.7 24.1
C8 N9 C1' C4 179.7 179.9
C1' N9 C8 N7 180.0 180.1
C1' N9 C8 H8 0.0 0.1
C1' N9 C4 C5 180.1 179.7
C1' N9 C4 N3 359.9 359.8
C4' C3' C2' C1' 355.5 0.1
O4' C1' C2' N9 238.6 241.2
O4' C1' C2' H1' 121.5 119.0
N9 C1' C2' H1' 242.9 237.8
C2' C1' N9 C8 222.8 266.5
C2' C1' N9 C4 43.1 86.6
O2' C2' C1' C3' 121.6 118.7
O2' C2' C1' H2' 241.1 237.3
C1' C2' O2' H2 180.0 183.9
C3' C2' C1' H2' 119.4 118.6
C1' C2' C3' O3' 117.7 118.8
C1' C2' C3' H3' 235.8 241.4
O4' C1' H1' N9 119.5 122.3
O4' C1' H1' C2' 241.7 244.5
N9 C1' H1' C2' 122.3 122.2
H1' C1' N9 C8 104.5 144.3
H1' C1' N9 C4 284.7 324.4
H1' C1' C2' O2' 359.9 23.6
H1' C1' C2' C3' 238.2 264.9
H1' C1' C2' H2' 118.8 146.3
C8 N9 C1' C2' 222.8 266.5
C8 N9 C1' H1' 104.5 144.3
C1' N9 C8 C4 180.2 180.1
C8 N9 C4 C5 0.3 359.8
C8 N9 C4 N3 180.1 179.9
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C1 119.6 180.0
N9 C8 N7 C5 0.0 0.2
C4 N9 C1' C2' 43.1 86.6
C4 N9 C1' H1' 284.7 324.4
C1' N9 C4 C8 179.8 179.9
C4 N9 C8 N7 359.8 360.0
C4 N9 C8 H8 179.8 180.0
N7 C5 C4 N9 359.7 0.3
C6 C5 C4 N9 179.6 179.7
C5 C4 N9 N3 180.2 179.8
C2 N3 C4 N9 180.5 180.0
N7 C8 N9 C4 359.8 360.0
N9 C8 N7 H8 180.0 180.0
C1 N7 C8 C5 119.6 179.8
C8 N7 C1 H11 54.7 90.0
C8 N7 C1 H12 180.0 210.0
C8 N7 C1 H13 305.3 330.0
C8 N7 C5 C6 180.2 180.5
C8 N7 C5 C4 0.2 359.7
H8 C8 N9 C4 179.8 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C1 299.6 360.0
H8 C8 N7 C5 180.0 180.2
C1 N7 C8 H8 299.6 360.0
C8 N7 C1 C5 244.6 180.3
C1 N7 C5 C6 61.0 0.7
C1 N7 C5 C4 240.9 179.9
H11 C1 N7 H12 234.7 239.9
H11 C1 N7 H13 109.4 119.9
H12 C1 N7 H13 234.7 240.0
N9 C4 C5 N7 359.7 0.3
C5 N7 C8 H8 180.0 180.2
C8 N7 C5 C1 119.3 179.8
C5 N7 C1 H11 170.1 269.7
C5 N7 C1 H12 295.4 29.7
C5 N7 C1 H13 60.7 149.7
C6 C5 N7 C4 180.1 180.8
N7 C5 C6 S6 0.2 359.3
N7 C5 C6 N1 179.8 179.6
N7 C5 C4 N3 179.9 180.2
H11 C1 N7 C5 170.1 269.7
N7 C1 H11 H12 124.6 120.1
N7 C1 H11 H13 242.3 240.0
H12 C1 H11 H13 117.7 119.9
H12 C1 N7 C5 295.4 29.7
N7 C1 H12 H11 234.8 239.9
N7 C1 H12 H13 125.3 120.0
H11 C1 H12 H13 250.5 240.1
H13 C1 N7 C5 60.7 149.7
N7 C1 H13 H11 117.6 120.0
N7 C1 H13 H12 235.4 239.9
H11 C1 H13 H12 117.7 120.0
N9 C4 C5 C6 179.6 179.7
N7 C5 C6 C4 179.9 179.1
C6 C5 C4 N3 359.8 359.6
S6 C6 C5 N1 180.3 179.7
C5 C6 N1 C2 0.3 359.7
N9 C4 C5 N3 179.8 180.1
N7 C5 C4 C6 180.0 180.6
C4 C5 C6 S6 180.2 180.2
C4 C5 C6 N1 359.9 0.5
C2 N3 C4 C5 0.3 0.2
S6 C6 C5 C4 180.2 180.2
C5 C6 S6 N1 179.6 180.3
S6 C6 N1 C2 180.0 180.0
N1 C6 C5 C4 359.9 0.5
C5 C6 N1 S6 180.3 179.7
C6 N1 C2 N2 179.7 180.0
C6 N1 C2 N3 359.8 0.0
N2 C2 N1 N3 180.0 180.0
N1 C2 N2 HN21 54.7 180.0
N1 C2 N2 HN22 180.0 0.0
N1 C2 N3 C4 359.9 0.0
N1 C2 N2 N3 180.0 180.0
N2 C2 N3 C4 180.0 180.0
HN21 N2 C2 HN22 234.7 180.0
N9 C4 N3 C2 180.5 180.0
C5 C4 N3 C2 0.3 0.2
N1 C2 N3 N2 180.0 180.0
N3 C2 N2 HN21 234.7 0.0
N3 C2 N2 HN22 360.0 180.0
HN21 N2 C2 N3 234.7 0.0
C2 N2 HN21 HN22 131.6 180.0
HN22 N2 C2 N3 360.0 180.0
C2 N2 HN22 HN21 234.7 180.0
N9 C4 N3 C5 180.3 179.8
C4' C3' C2' O2' 237.6 241.2
O2' C2' C1' H1' 359.9 23.6
C1' C2' O2' C3' 242.6 245.3
C1' C2' O2' H2' 123.1 122.8
C3' C2' O2' H2' 240.4 237.4
O2' C2' C3' O3' 359.8 359.9
O2' C2' C3' H3' 118.0 122.5
C2' C3' C4' H4' 136.5 94.7
C4' C3' C2' O3' 237.8 241.4
C4' C3' C2' H3' 119.6 118.7
C3' C2' C1' H1' 238.2 264.9
C1' C2' C3' O2' 117.9 118.9
C1' C2' C3' H2' 236.9 241.4
O2' C2' C3' H2' 119.1 122.5
C3' C2' O2' H2 297.4 298.5
O3' C3' C2' H3' 241.9 237.4
C2' C3' O3' H1 61.4 183.9
H2' C2' C1' H1' 118.8 146.3
C1' C2' H2' O2' 241.1 237.1
C1' C2' H2' C3' 118.4 114.5
O2' C2' H2' C3' 237.3 237.5
H2' C2' O2' H2 57.0 61.1
H2' C2' C3' O3' 240.8 237.3
H2' C2' C3' H3' 358.9 360.0
H2 O2' C2' C3' 297.4 298.5
H2 O2' C2' H2' 57.0 61.1
O3' C3' C4' H4' 16.4 336.0
C4' C3' O3' C2' 118.6 114.7
C4' C3' O3' H3' 240.4 237.4
O3' C3' C2' H2' 240.8 237.3
C2' C3' O3' H3' 121.8 122.7
H3' C3' C4' H4' 258.3 213.5
C4' C3' H3' C2' 241.7 245.3
C4' C3' H3' O3' 121.9 122.5
H3' C3' C2' H2' 358.9 360.0
C2' C3' H3' O3' 240.2 237.3
H3' C3' O3' H1 299.6 61.1
H1 O3' C3' H3' 299.6 61.1