PDB Chemical Component MSE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MSE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.461 |
1.469 |
| N |
H |
1.019 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
C |
1.529 |
1.506 |
| CA |
CB |
1.530 |
1.529 |
| CA |
HA |
1.115 |
1.091 |
| C |
O |
1.251 |
1.207 |
| C |
OXT |
1.250 |
1.342 |
| OXT |
HXT |
0.951 |
0.967 |
| CB |
CG |
1.521 |
1.529 |
| CB |
HB2 |
1.114 |
1.090 |
| CB |
HB3 |
1.116 |
1.090 |
| CG |
SE |
1.803 |
1.959 |
| CG |
HG2 |
1.115 |
1.090 |
| CG |
HG3 |
1.114 |
1.090 |
| SE |
CE |
1.792 |
1.959 |
| CE |
HE1 |
1.115 |
1.090 |
| CE |
HE2 |
1.115 |
1.090 |
| CE |
HE3 |
1.115 |
1.090 |
Bond Angles for MSE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
112.3 |
106.7 |
| CA |
N |
H2 |
111.2 |
106.8 |
| N |
CA |
C |
112.3 |
109.5 |
| N |
CA |
CB |
110.0 |
109.4 |
| N |
CA |
HA |
107.2 |
109.4 |
| H |
N |
H2 |
111.2 |
106.7 |
| C |
CA |
CB |
109.5 |
109.5 |
| C |
CA |
HA |
107.7 |
109.5 |
| CA |
C |
O |
118.4 |
120.0 |
| CA |
C |
OXT |
117.8 |
120.0 |
| CB |
CA |
HA |
110.1 |
109.4 |
| CA |
CB |
CG |
114.0 |
109.6 |
| CA |
CB |
HB2 |
110.5 |
109.5 |
| CA |
CB |
HB3 |
110.5 |
109.5 |
| O |
C |
OXT |
123.8 |
120.0 |
| C |
OXT |
HXT |
117.8 |
120.0 |
| CG |
CB |
HB2 |
110.6 |
109.4 |
| CG |
CB |
HB3 |
110.6 |
109.5 |
| CB |
CG |
SE |
112.7 |
109.5 |
| CB |
CG |
HG2 |
111.0 |
109.4 |
| CB |
CG |
HG3 |
111.0 |
109.4 |
| HB2 |
CB |
HB3 |
99.8 |
109.4 |
| SE |
CG |
HG2 |
111.1 |
109.5 |
| SE |
CG |
HG3 |
111.0 |
109.5 |
| CG |
SE |
CE |
100.8 |
95.1 |
| HG2 |
CG |
HG3 |
99.3 |
109.4 |
| SE |
CE |
HE1 |
100.8 |
109.5 |
| SE |
CE |
HE2 |
115.5 |
109.5 |
| SE |
CE |
HE3 |
115.5 |
109.4 |
| HE1 |
CE |
HE2 |
115.6 |
109.5 |
| HE1 |
CE |
HE3 |
115.5 |
109.5 |
| HE2 |
CE |
HE3 |
95.0 |
109.5 |
Torsion Angles for MSE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.4 |
246.2 |
| C |
CA |
N |
CB |
122.2 |
120.1 |
| C |
CA |
N |
HA |
241.9 |
240.0 |
| N |
CA |
C |
O |
355.4 |
329.9 |
| N |
CA |
C |
OXT |
175.7 |
150.0 |
| CB |
CA |
N |
HA |
119.7 |
119.9 |
| N |
CA |
CB |
CG |
300.2 |
300.1 |
| N |
CA |
CB |
HB2 |
65.5 |
180.1 |
| N |
CA |
CB |
HB3 |
175.0 |
60.1 |
| CA |
N |
H |
H2 |
234.7 |
113.9 |
| H |
N |
CA |
C |
180.1 |
60.0 |
| H |
N |
CA |
CB |
57.8 |
299.9 |
| H |
N |
CA |
HA |
298.1 |
180.0 |
| CA |
N |
H2 |
H |
125.9 |
246.2 |
| H2 |
N |
CA |
C |
54.7 |
173.7 |
| H2 |
N |
CA |
CB |
292.5 |
53.6 |
| H2 |
N |
CA |
HA |
172.8 |
293.8 |
| C |
CA |
N |
H |
180.1 |
60.0 |
| C |
CA |
N |
H2 |
54.7 |
173.7 |
| N |
CA |
C |
CB |
237.5 |
240.0 |
| N |
CA |
C |
HA |
117.8 |
120.0 |
| CB |
CA |
C |
HA |
240.3 |
240.0 |
| C |
CA |
CB |
CG |
176.4 |
180.0 |
| C |
CA |
CB |
HB2 |
301.6 |
60.0 |
| C |
CA |
CB |
HB3 |
51.1 |
300.1 |
| O |
C |
CA |
OXT |
179.8 |
179.9 |
| CA |
C |
OXT |
HXT |
180.1 |
180.0 |
| CB |
CA |
N |
H |
57.8 |
299.9 |
| CB |
CA |
N |
H2 |
292.5 |
53.6 |
| N |
CA |
CB |
C |
123.9 |
120.1 |
| N |
CA |
CB |
HA |
242.1 |
240.1 |
| C |
CA |
CB |
HA |
118.2 |
120.0 |
| CB |
CA |
C |
O |
117.9 |
90.0 |
| CB |
CA |
C |
OXT |
298.2 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
120.0 |
| CG |
CB |
CA |
HB3 |
125.2 |
240.0 |
| CA |
CB |
CG |
SE |
179.5 |
180.0 |
| CA |
CB |
CG |
HG2 |
304.8 |
59.9 |
| CA |
CB |
CG |
HG3 |
54.2 |
300.0 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
119.9 |
| HA |
CA |
N |
H |
298.1 |
180.0 |
| HA |
CA |
N |
H2 |
172.8 |
293.8 |
| N |
CA |
HA |
C |
239.0 |
240.0 |
| N |
CA |
HA |
CB |
119.6 |
119.9 |
| C |
CA |
HA |
CB |
240.6 |
239.9 |
| HA |
CA |
C |
O |
237.7 |
209.9 |
| HA |
CA |
C |
OXT |
57.9 |
30.0 |
| HA |
CA |
CB |
CG |
58.1 |
60.0 |
| HA |
CA |
CB |
HB2 |
183.4 |
300.0 |
| HA |
CA |
CB |
HB3 |
292.9 |
180.0 |
| O |
C |
CA |
CB |
117.9 |
90.0 |
| O |
C |
CA |
HA |
237.7 |
209.9 |
| CA |
C |
O |
OXT |
180.2 |
180.1 |
| O |
C |
OXT |
HXT |
0.3 |
0.0 |
| OXT |
C |
CA |
CB |
298.2 |
270.0 |
| OXT |
C |
CA |
HA |
57.9 |
30.0 |
| CA |
C |
OXT |
O |
179.8 |
179.9 |
| CG |
CB |
CA |
HA |
58.1 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.2 |
239.9 |
| CA |
CB |
CG |
HB3 |
234.8 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.6 |
240.1 |
| SE |
CG |
CB |
HG2 |
234.7 |
120.1 |
| SE |
CG |
CB |
HG3 |
125.3 |
240.0 |
| CB |
CG |
SE |
CE |
269.3 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
250.6 |
119.9 |
| HB2 |
CB |
CA |
HA |
183.4 |
300.0 |
| CA |
CB |
HB2 |
CG |
232.8 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
116.4 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
243.6 |
119.9 |
| HB2 |
CB |
CG |
SE |
54.3 |
300.1 |
| HB2 |
CB |
CG |
HG2 |
179.6 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
289.0 |
60.1 |
| HB3 |
CB |
CA |
HA |
292.9 |
180.0 |
| CA |
CB |
HB3 |
CG |
127.2 |
239.9 |
| CA |
CB |
HB3 |
HB2 |
243.7 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
116.5 |
240.1 |
| HB3 |
CB |
CG |
SE |
304.7 |
59.9 |
| HB3 |
CB |
CG |
HG2 |
70.0 |
299.8 |
| HB3 |
CB |
CG |
HG3 |
179.4 |
180.0 |
| SE |
CG |
CB |
HB2 |
54.3 |
300.1 |
| SE |
CG |
CB |
HB3 |
304.7 |
59.9 |
| CB |
CG |
SE |
HG2 |
125.3 |
240.0 |
| CB |
CG |
SE |
HG3 |
234.7 |
120.0 |
| HG2 |
CG |
SE |
HG3 |
109.5 |
240.0 |
| CG |
SE |
CE |
HE1 |
180.0 |
180.0 |
| CG |
SE |
CE |
HE2 |
305.3 |
300.0 |
| CG |
SE |
CE |
HE3 |
54.7 |
60.0 |
| HG2 |
CG |
CB |
HB2 |
179.6 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
70.0 |
299.8 |
| CB |
CG |
HG2 |
SE |
233.8 |
120.1 |
| CB |
CG |
HG2 |
HG3 |
116.8 |
240.1 |
| SE |
CG |
HG2 |
HG3 |
243.1 |
120.0 |
| HG2 |
CG |
SE |
CE |
144.1 |
300.0 |
| HG3 |
CG |
CB |
HB2 |
289.0 |
60.1 |
| HG3 |
CG |
CB |
HB3 |
179.4 |
180.0 |
| CB |
CG |
HG3 |
SE |
126.2 |
239.9 |
| CB |
CG |
HG3 |
HG2 |
243.2 |
119.9 |
| SE |
CG |
HG3 |
HG2 |
116.9 |
240.0 |
| HG3 |
CG |
SE |
CE |
34.6 |
60.0 |
| CE |
SE |
CG |
HG2 |
144.1 |
300.0 |
| CE |
SE |
CG |
HG3 |
34.6 |
60.0 |
| HE1 |
CE |
SE |
HE2 |
234.7 |
240.0 |
| HE1 |
CE |
SE |
HE3 |
125.2 |
120.0 |
| HE2 |
CE |
SE |
HE3 |
250.6 |
240.0 |
| SE |
CE |
HE1 |
HE2 |
125.2 |
120.0 |
| SE |
CE |
HE1 |
HE3 |
234.8 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
109.6 |
120.0 |
| SE |
CE |
HE2 |
HE1 |
242.7 |
240.0 |
| SE |
CE |
HE2 |
HE3 |
121.3 |
119.9 |
| HE1 |
CE |
HE2 |
HE3 |
238.6 |
240.0 |
| SE |
CE |
HE3 |
HE1 |
117.2 |
120.0 |
| SE |
CE |
HE3 |
HE2 |
238.7 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
121.5 |
120.0 |