PDB Chemical Component MRK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MRK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S1 |
C2 |
1.728 |
1.787 |
| S1 |
C5 |
1.714 |
1.736 |
| C2 |
C3 |
1.364 |
1.355 |
| C2 |
H2 |
1.103 |
1.080 |
| C3 |
N4 |
1.373 |
1.319 |
| C3 |
H3 |
1.103 |
1.080 |
| N4 |
C5 |
1.341 |
1.318 |
| C5 |
N6 |
1.365 |
1.389 |
| N6 |
C7 |
1.440 |
1.347 |
| N6 |
HN6 |
1.020 |
0.970 |
| C7 |
O8 |
1.238 |
1.216 |
| C7 |
C10 |
1.541 |
1.473 |
| C9 |
C10 |
1.451 |
1.403 |
| C9 |
C15 |
1.416 |
1.388 |
| C9 |
N23 |
1.336 |
1.391 |
| C10 |
C11 |
1.443 |
1.397 |
| C11 |
C12 |
1.409 |
1.383 |
| C11 |
H11 |
1.103 |
1.079 |
| C12 |
C13 |
1.426 |
1.394 |
| C12 |
S16 |
1.771 |
1.761 |
| C13 |
F14 |
1.360 |
1.352 |
| C13 |
C15 |
1.416 |
1.381 |
| C15 |
H15 |
1.103 |
1.080 |
| S16 |
C18 |
1.761 |
1.761 |
| N17 |
C18 |
1.390 |
1.361 |
| N17 |
C21 |
1.387 |
1.376 |
| N17 |
C22 |
1.482 |
1.465 |
| C18 |
N19 |
1.376 |
1.313 |
| N19 |
C20 |
1.388 |
1.343 |
| C20 |
C21 |
1.398 |
1.344 |
| C20 |
H20 |
1.103 |
1.080 |
| C21 |
H21 |
1.103 |
1.080 |
| C22 |
H221 |
1.115 |
1.089 |
| C22 |
H222 |
1.115 |
1.090 |
| C22 |
H223 |
1.115 |
1.090 |
| N23 |
H231 |
1.020 |
0.970 |
| N23 |
H232 |
1.020 |
0.969 |
Bond Angles for MRK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C5 |
90.2 |
97.5 |
| S1 |
C2 |
C3 |
109.7 |
100.7 |
| S1 |
C2 |
H2 |
134.6 |
129.6 |
| S1 |
C5 |
N4 |
113.7 |
102.2 |
| S1 |
C5 |
N6 |
125.4 |
128.9 |
| C3 |
C2 |
H2 |
115.6 |
129.7 |
| C2 |
C3 |
N4 |
115.4 |
118.4 |
| C2 |
C3 |
H3 |
122.0 |
120.7 |
| N4 |
C3 |
H3 |
122.6 |
120.8 |
| C3 |
N4 |
C5 |
110.9 |
121.2 |
| N4 |
C5 |
N6 |
120.8 |
128.9 |
| C5 |
N6 |
C7 |
128.2 |
120.0 |
| C5 |
N6 |
HN6 |
112.8 |
120.0 |
| C7 |
N6 |
HN6 |
119.0 |
120.0 |
| N6 |
C7 |
O8 |
121.3 |
120.0 |
| N6 |
C7 |
C10 |
118.8 |
120.0 |
| O8 |
C7 |
C10 |
119.9 |
120.0 |
| C7 |
C10 |
C9 |
127.9 |
120.1 |
| C7 |
C10 |
C11 |
114.5 |
120.1 |
| C10 |
C9 |
C15 |
120.3 |
119.8 |
| C10 |
C9 |
N23 |
123.3 |
120.1 |
| C9 |
C10 |
C11 |
117.5 |
119.8 |
| C15 |
C9 |
N23 |
116.4 |
120.1 |
| C9 |
C15 |
C13 |
121.1 |
120.1 |
| C9 |
C15 |
H15 |
119.5 |
119.9 |
| C9 |
N23 |
H231 |
107.3 |
120.0 |
| C9 |
N23 |
H232 |
123.3 |
120.0 |
| C10 |
C11 |
C12 |
121.4 |
119.8 |
| C10 |
C11 |
H11 |
120.5 |
120.2 |
| C12 |
C11 |
H11 |
118.1 |
120.0 |
| C11 |
C12 |
C13 |
120.2 |
120.1 |
| C11 |
C12 |
S16 |
116.9 |
119.9 |
| C13 |
C12 |
S16 |
122.9 |
119.9 |
| C12 |
C13 |
F14 |
122.1 |
119.8 |
| C12 |
C13 |
C15 |
119.5 |
120.4 |
| C12 |
S16 |
C18 |
113.6 |
100.0 |
| F14 |
C13 |
C15 |
118.3 |
119.8 |
| C13 |
C15 |
H15 |
119.5 |
120.0 |
| S16 |
C18 |
N17 |
118.5 |
125.8 |
| S16 |
C18 |
N19 |
121.8 |
125.8 |
| C18 |
N17 |
C21 |
99.3 |
107.0 |
| C18 |
N17 |
C22 |
130.4 |
126.5 |
| N17 |
C18 |
N19 |
119.7 |
108.4 |
| C21 |
N17 |
C22 |
130.3 |
126.5 |
| N17 |
C21 |
C20 |
110.6 |
107.0 |
| N17 |
C21 |
H21 |
124.4 |
126.5 |
| N17 |
C22 |
H221 |
105.0 |
109.4 |
| N17 |
C22 |
H222 |
130.4 |
109.4 |
| N17 |
C22 |
H223 |
104.9 |
109.5 |
| C18 |
N19 |
C20 |
99.1 |
109.3 |
| N19 |
C20 |
C21 |
111.4 |
108.3 |
| N19 |
C20 |
H20 |
124.0 |
125.8 |
| C21 |
C20 |
H20 |
124.7 |
125.9 |
| C20 |
C21 |
H21 |
125.0 |
126.5 |
| H221 |
C22 |
H222 |
104.9 |
109.5 |
| H221 |
C22 |
H223 |
104.2 |
109.5 |
| H222 |
C22 |
H223 |
104.9 |
109.5 |
| H231 |
N23 |
H232 |
107.3 |
120.0 |
Torsion Angles for MRK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C5 |
N4 |
0.0 |
0.2 |
| C2 |
S1 |
C5 |
N6 |
180.5 |
180.0 |
| C3 |
C2 |
S1 |
H2 |
180.0 |
180.1 |
| S1 |
C2 |
C3 |
N4 |
0.0 |
359.6 |
| S1 |
C2 |
C3 |
H3 |
180.0 |
180.0 |
| C5 |
S1 |
C2 |
C3 |
360.0 |
0.1 |
| C5 |
S1 |
C2 |
H2 |
180.0 |
179.9 |
| C3 |
N4 |
C5 |
S1 |
360.0 |
359.5 |
| N4 |
C5 |
S1 |
N6 |
179.5 |
180.2 |
| S1 |
C5 |
N6 |
C7 |
355.6 |
180.1 |
| S1 |
C5 |
N6 |
HN6 |
175.6 |
360.0 |
| C3 |
C2 |
S1 |
C5 |
360.0 |
0.1 |
| S1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| N4 |
C3 |
C2 |
H3 |
180.0 |
179.6 |
| C2 |
C3 |
N4 |
C5 |
0.0 |
0.7 |
| H2 |
C2 |
S1 |
C5 |
180.0 |
179.9 |
| S1 |
C2 |
H2 |
C3 |
180.0 |
180.2 |
| H2 |
C2 |
C3 |
N4 |
180.0 |
179.7 |
| H2 |
C2 |
C3 |
H3 |
360.0 |
0.1 |
| S1 |
C5 |
N4 |
C3 |
360.0 |
359.5 |
| N4 |
C3 |
C2 |
H2 |
180.0 |
179.7 |
| C2 |
C3 |
N4 |
H3 |
180.0 |
180.4 |
| C3 |
N4 |
C5 |
N6 |
179.5 |
179.7 |
| H3 |
C3 |
C2 |
H2 |
360.0 |
0.1 |
| C2 |
C3 |
H3 |
N4 |
180.0 |
179.6 |
| H3 |
C3 |
N4 |
C5 |
180.0 |
180.3 |
| S1 |
C5 |
N4 |
N6 |
180.4 |
179.8 |
| C5 |
N4 |
C3 |
H3 |
180.0 |
180.3 |
| N4 |
C5 |
N6 |
C7 |
176.1 |
359.7 |
| N4 |
C5 |
N6 |
HN6 |
356.1 |
179.7 |
| S1 |
C5 |
N6 |
N4 |
179.5 |
180.3 |
| C7 |
N6 |
C5 |
HN6 |
180.0 |
180.1 |
| C5 |
N6 |
C7 |
O8 |
359.7 |
359.9 |
| C5 |
N6 |
C7 |
C10 |
179.0 |
180.0 |
| C5 |
N6 |
C7 |
HN6 |
180.0 |
179.9 |
| O8 |
C7 |
N6 |
C10 |
180.6 |
179.9 |
| N6 |
C7 |
C10 |
C9 |
155.7 |
185.7 |
| N6 |
C7 |
C10 |
C11 |
335.1 |
5.7 |
| C5 |
N6 |
HN6 |
C7 |
180.0 |
180.1 |
| HN6 |
N6 |
C7 |
O8 |
179.7 |
180.0 |
| HN6 |
N6 |
C7 |
C10 |
359.1 |
0.1 |
| O8 |
C7 |
N6 |
HN6 |
179.7 |
180.0 |
| N6 |
C7 |
O8 |
C10 |
179.4 |
180.1 |
| O8 |
C7 |
C10 |
C9 |
335.1 |
5.8 |
| O8 |
C7 |
C10 |
C11 |
154.4 |
185.8 |
| C10 |
C7 |
N6 |
HN6 |
359.1 |
0.1 |
| N6 |
C7 |
C10 |
O8 |
180.6 |
179.9 |
| C7 |
C10 |
C9 |
C15 |
179.7 |
180.0 |
| C7 |
C10 |
C9 |
N23 |
359.6 |
360.0 |
| C9 |
C10 |
C7 |
C11 |
180.7 |
180.0 |
| C7 |
C10 |
C11 |
C12 |
180.3 |
180.0 |
| C7 |
C10 |
C11 |
H11 |
0.4 |
360.0 |
| C7 |
C10 |
C9 |
C11 |
179.3 |
180.0 |
| C15 |
C9 |
C10 |
N23 |
180.1 |
180.0 |
| C10 |
C9 |
C15 |
C13 |
359.8 |
359.7 |
| C10 |
C9 |
C15 |
H15 |
179.8 |
180.0 |
| C10 |
C9 |
N23 |
H231 |
54.7 |
154.9 |
| C10 |
C9 |
N23 |
H232 |
180.0 |
334.8 |
| C9 |
C10 |
C11 |
C12 |
359.8 |
360.0 |
| C9 |
C10 |
C11 |
H11 |
179.8 |
180.0 |
| C10 |
C9 |
C15 |
N23 |
179.9 |
180.0 |
| C15 |
C9 |
C10 |
C11 |
0.4 |
0.0 |
| C15 |
C9 |
N23 |
H231 |
234.6 |
334.9 |
| C15 |
C9 |
N23 |
H232 |
359.9 |
154.8 |
| C12 |
C13 |
C15 |
C9 |
360.0 |
0.5 |
| F14 |
C13 |
C15 |
C9 |
180.1 |
180.0 |
| C13 |
C15 |
C9 |
H15 |
180.0 |
179.7 |
| C10 |
C9 |
N23 |
C15 |
180.1 |
180.0 |
| N23 |
C9 |
C10 |
C11 |
180.3 |
180.0 |
| N23 |
C9 |
C15 |
C13 |
179.9 |
179.7 |
| N23 |
C9 |
C15 |
H15 |
359.9 |
0.0 |
| H231 |
N23 |
C9 |
H232 |
234.8 |
180.0 |
| C7 |
C10 |
C11 |
C9 |
180.6 |
180.0 |
| C11 |
C10 |
C9 |
C15 |
0.4 |
0.0 |
| C11 |
C10 |
C9 |
N23 |
180.3 |
180.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
360.0 |
0.3 |
| C10 |
C11 |
C12 |
S16 |
179.7 |
179.9 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
S16 |
180.3 |
180.3 |
| C11 |
C12 |
C13 |
F14 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
C15 |
0.2 |
359.5 |
| C11 |
C12 |
S16 |
C18 |
148.2 |
105.3 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C12 |
C13 |
180.0 |
180.3 |
| H11 |
C11 |
C12 |
S16 |
359.7 |
359.9 |
| C9 |
C15 |
C13 |
C12 |
360.0 |
0.5 |
| C13 |
C12 |
C11 |
H11 |
180.0 |
180.3 |
| C11 |
C12 |
C13 |
S16 |
179.7 |
179.7 |
| C13 |
C12 |
S16 |
C18 |
327.9 |
284.9 |
| F14 |
C13 |
C12 |
C15 |
179.8 |
180.5 |
| C12 |
C13 |
C15 |
H15 |
180.0 |
180.2 |
| S16 |
C12 |
C11 |
H11 |
359.7 |
359.9 |
| C11 |
C12 |
S16 |
C13 |
180.3 |
180.3 |
| S16 |
C12 |
C13 |
F14 |
0.3 |
0.3 |
| S16 |
C12 |
C13 |
C15 |
180.5 |
179.8 |
| C12 |
S16 |
C18 |
N17 |
97.0 |
174.5 |
| C12 |
S16 |
C18 |
N19 |
277.0 |
354.8 |
| C9 |
C15 |
C13 |
F14 |
180.1 |
180.0 |
| F14 |
C13 |
C12 |
S16 |
0.3 |
0.3 |
| C12 |
C13 |
F14 |
C15 |
180.2 |
179.5 |
| F14 |
C13 |
C15 |
H15 |
0.1 |
359.7 |
| C13 |
C15 |
C9 |
N23 |
179.9 |
179.7 |
| C9 |
C15 |
C13 |
H15 |
180.0 |
180.3 |
| C15 |
C13 |
C12 |
S16 |
180.5 |
179.8 |
| C12 |
C13 |
C15 |
F14 |
179.8 |
180.5 |
| H15 |
C15 |
C9 |
N23 |
359.9 |
0.0 |
| C9 |
C15 |
H15 |
C13 |
180.0 |
179.7 |
| S16 |
C18 |
N17 |
C21 |
179.9 |
179.9 |
| S16 |
C18 |
N17 |
C22 |
359.9 |
0.2 |
| N17 |
C18 |
S16 |
N19 |
180.1 |
179.7 |
| S16 |
C18 |
N19 |
C20 |
180.1 |
180.1 |
| S16 |
C18 |
N17 |
N19 |
179.9 |
180.3 |
| C21 |
N17 |
C18 |
C22 |
180.0 |
179.8 |
| C18 |
N17 |
C21 |
C20 |
360.0 |
0.2 |
| C18 |
N17 |
C21 |
H21 |
180.0 |
180.2 |
| C18 |
N17 |
C22 |
H221 |
54.8 |
269.7 |
| C18 |
N17 |
C22 |
H222 |
180.0 |
29.7 |
| C18 |
N17 |
C22 |
H223 |
305.3 |
149.7 |
| N17 |
C18 |
N19 |
C20 |
0.1 |
0.4 |
| C18 |
N17 |
C21 |
C22 |
180.0 |
180.2 |
| C21 |
N17 |
C18 |
N19 |
360.0 |
359.6 |
| C21 |
N17 |
C22 |
H221 |
234.7 |
90.0 |
| C21 |
N17 |
C22 |
H222 |
360.0 |
210.0 |
| C21 |
N17 |
C22 |
H223 |
125.2 |
330.0 |
| N19 |
C20 |
C21 |
N17 |
0.1 |
0.0 |
| N17 |
C21 |
C20 |
H20 |
180.1 |
179.9 |
| C20 |
C21 |
N17 |
H21 |
180.0 |
180.0 |
| C18 |
N17 |
C22 |
C21 |
180.0 |
179.7 |
| C22 |
N17 |
C18 |
N19 |
180.0 |
179.9 |
| C22 |
N17 |
C21 |
C20 |
180.0 |
180.0 |
| C22 |
N17 |
C21 |
H21 |
360.0 |
360.0 |
| H221 |
C22 |
N17 |
H222 |
234.8 |
240.0 |
| H221 |
C22 |
N17 |
H223 |
109.5 |
120.0 |
| H222 |
C22 |
N17 |
H223 |
234.7 |
240.0 |
| S16 |
C18 |
N19 |
N17 |
180.1 |
179.7 |
| N19 |
C18 |
N17 |
C21 |
360.0 |
359.6 |
| N19 |
C18 |
N17 |
C22 |
180.0 |
179.9 |
| C18 |
N19 |
C20 |
C21 |
359.9 |
359.7 |
| C18 |
N19 |
C20 |
H20 |
179.9 |
179.8 |
| N17 |
C21 |
C20 |
N19 |
0.1 |
0.0 |
| C21 |
C20 |
N19 |
H20 |
180.0 |
179.9 |
| N19 |
C20 |
C21 |
H21 |
180.1 |
180.0 |
| C20 |
C21 |
N17 |
C22 |
180.0 |
180.0 |
| N17 |
C21 |
C20 |
H21 |
180.0 |
180.0 |
| N19 |
C20 |
C21 |
H20 |
180.0 |
180.1 |
| N19 |
C20 |
H20 |
C21 |
180.0 |
179.9 |
| H20 |
C20 |
C21 |
H21 |
0.1 |
359.9 |
| H21 |
C21 |
N17 |
C22 |
360.0 |
360.0 |
| N17 |
C21 |
H21 |
C20 |
180.0 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
0.1 |
359.9 |
| N17 |
C22 |
H221 |
H222 |
140.0 |
120.0 |
| N17 |
C22 |
H221 |
H223 |
250.0 |
240.0 |
| H222 |
C22 |
H221 |
H223 |
110.0 |
120.1 |
| N17 |
C22 |
H222 |
H221 |
234.7 |
240.1 |
| N17 |
C22 |
H222 |
H223 |
125.3 |
120.0 |
| H221 |
C22 |
H222 |
H223 |
250.5 |
239.9 |
| N17 |
C22 |
H223 |
H221 |
110.1 |
120.0 |
| N17 |
C22 |
H223 |
H222 |
220.0 |
240.0 |
| H221 |
C22 |
H223 |
H222 |
110.0 |
120.1 |
| C9 |
N23 |
H231 |
H232 |
134.4 |
180.0 |
| C9 |
N23 |
H232 |
H231 |
234.8 |
180.0 |