PDB Chemical Component MRG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MRG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.502 1.501
P OP2 1.516 1.617
P O5' 1.599 1.620
P OP3   1.618
OP2 HOP2 0.950 0.981
O5' C5' 1.422 1.416
N9 C4 1.371 1.366
N9 C8 1.325 1.376
N9 C1' 1.481 1.459
C4 N3 1.311 1.352
C4 C5 1.331 1.374
N3 C2 1.267 1.315
C2 N1 1.405 1.415
C2 N2 1.448 1.370
N1 C6 1.421 1.402
N1 H1 1.020 1.015
C6 O6 1.250 1.224
C6 C5 1.412 1.437
C5 N7 1.396 1.363
N7 C8 1.255 1.319
C8 H8 1.102 1.082
N2 C21 1.388 1.433
N2 H21 1.020 0.990
C21 C22 1.520 1.527
C21 H211 1.115 1.094
C21 H212 1.114 1.095
C22 C23 1.521 1.528
C22 H221 1.115 1.098
C22 H222 1.115 1.098
C23 S24 1.795 1.818
C23 H231 1.115 1.094
C23 H232 1.115 1.094
S24 H24 0.949 1.339
C2' C1' 1.523 1.523
C2' C3' 1.492 1.511
C2' H2' 1.114 1.096
C2' H2'' 1.115 1.095
C5' C4' 1.457 1.522
C5' H5' 1.114 1.092
C5' H5'' 1.115 1.091
C4' O4' 1.473 1.443
C4' C3' 1.507 1.526
C4' H4' 1.114 1.095
O4' C1' 1.451 1.437
C1' H1' 1.115 1.095
C3' O3' 1.455 1.426
C3' H3' 1.115 1.092
O3' HO3' 0.950 0.970
OP3 HOP3   0.981

Bond Angles for MRG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.1 115.3
OP1 P O5' 110.3 115.0
OP1 P OP3   115.0
OP2 P O5' 111.6 103.7
OP2 P OP3   103.3
P OP2 HOP2 120.1 118.9
O5' P OP3   102.9
P O5' C5' 117.6 118.5
P OP3 HOP3   118.9
O5' C5' C4' 115.7 108.7
O5' C5' H5' 109.9 109.2
O5' C5' H5'' 109.9 109.2
C4 N9 C8 104.9 106.5
C4 N9 C1' 128.4 127.4
N9 C4 N3 120.2 126.0
N9 C4 C5 106.1 105.0
C8 N9 C1' 126.2 126.1
N9 C8 N7 115.4 112.5
N9 C8 H8 124.8 121.9
N9 C1' C2' 120.2 114.3
N9 C1' O4' 112.9 110.0
N9 C1' H1' 97.1 105.9
N3 C4 C5 133.3 129.1
C4 N3 C2 110.8 113.0
C4 C5 C6 117.6 119.2
C4 C5 N7 109.5 112.1
N3 C2 N1 124.6 122.6
N3 C2 N2 119.2 122.0
N1 C2 N2 116.2 115.3
C2 N1 C6 122.8 125.3
C2 N1 H1 118.0 117.4
C2 N2 C21 122.8 120.5
C2 N2 H21 107.4 116.5
C6 N1 H1 119.2 117.4
N1 C6 O6 123.3 125.4
N1 C6 C5 110.3 110.8
O6 C6 C5 126.4 123.8
C6 C5 N7 132.8 128.7
C5 N7 C8 103.3 103.9
N7 C8 H8 119.8 125.6
C21 N2 H21 107.5 123.0
N2 C21 C22 106.3 112.9
N2 C21 H211 113.4 107.8
N2 C21 H212 113.4 106.8
C22 C21 H211 113.4 111.4
C22 C21 H212 113.4 109.6
C21 C22 C23 96.9 112.4
C21 C22 H221 117.1 109.4
C21 C22 H222 117.1 108.0
H211 C21 H212 97.1 108.2
C23 C22 H221 117.1 110.2
C23 C22 H222 117.1 109.4
C22 C23 S24 136.0 110.6
C22 C23 H231 103.1 111.2
C22 C23 H232 103.1 110.6
H221 C22 H222 93.2 107.3
S24 C23 H231 103.2 108.0
S24 C23 H232 103.2 108.3
C23 S24 H24 136.0 96.0
H231 C23 H232 105.4 108.1
C1' C2' C3' 108.0 101.6
C1' C2' H2' 112.8 110.5
C1' C2' H2'' 112.7 111.7
C2' C1' O4' 103.7 106.7
C2' C1' H1' 107.7 111.7
C3' C2' H2' 112.8 110.1
C3' C2' H2'' 112.8 114.2
C2' C3' C4' 97.6 103.2
C2' C3' O3' 109.4 108.4
C2' C3' H3' 117.6 113.8
H2' C2' H2'' 97.7 108.7
C4' C5' H5' 110.0 110.1
C4' C5' H5'' 110.0 110.1
C5' C4' O4' 109.5 108.1
C5' C4' C3' 119.8 112.7
C5' C4' H4' 102.3 109.4
H5' C5' H5'' 100.3 109.6
O4' C4' C3' 110.7 106.8
O4' C4' H4' 113.2 107.8
C4' O4' C1' 106.7 108.8
C3' C4' H4' 100.8 112.0
C4' C3' O3' 111.5 109.6
C4' C3' H3' 115.7 113.9
O4' C1' H1' 115.8 108.1
O3' C3' H3' 105.1 107.8
C3' O3' HO3' 109.3 106.5

Torsion Angles for MRG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 228.1 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 180.0 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 336.0 180.1
OP1 P OP3 HOP3   312.0
OP1 P OP2 O5' 131.4 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 112.2 53.2
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 223.8 126.8
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 48.6 175.4
O5' P OP3 HOP3   186.2
P O5' C5' C4' 214.6 180.0
P O5' C5' H5' 339.9 300.1
P O5' C5' H5'' 89.3 59.8
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 48.6 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 234.7 239.9
C4' C5' O5' H5'' 125.2 120.2
O5' C5' C4' O4' 310.4 61.8
O5' C5' C4' C3' 79.9 179.5
O5' C5' C4' H4' 190.1 304.7
H5' C5' O5' H5'' 250.5 240.3
C8 N9 C4 C1' 188.4 180.0
C4 N9 C8 N7 6.9 360.0
C4 N9 C8 H8 186.9 180.0
C4 N9 C1' C2' 120.3 93.5
C4 N9 C1' O4' 243.2 213.5
C4 N9 C1' H1' 5.0 330.0
N3 C4 N9 C5 174.2 179.9
N9 C4 N3 C2 184.2 180.0
N9 C4 C5 C6 174.1 180.0
N9 C4 C5 N7 355.7 360.0
C4 N9 C8 C1' 171.9 180.0
C8 N9 C4 N3 173.2 179.9
C8 N9 C4 C5 359.0 0.0
C8 N9 C1' C2' 290.2 273.4
C8 N9 C1' O4' 53.1 33.4
C8 N9 C1' H1' 175.0 150.0
C5 N7 C8 N9 350.7 0.0
N7 C8 N9 H8 180.0 180.0
C4 N9 C1' C8 190.1 180.0
C1' N9 C4 N3 344.8 359.9
C1' N9 C4 C5 170.6 180.0
C1' N9 C8 N7 195.1 180.0
C1' N9 C8 H8 15.0 0.0
N9 C1' C2' C3' 95.4 154.6
N9 C1' C2' H2' 220.7 37.8
N9 C1' C2' H2'' 330.2 276.7
C2' C1' N9 O4' 237.1 240.0
C2' C1' N9 H1' 115.2 123.4
C4' O4' C1' N9 240.4 218.2
O4' C1' N9 H1' 238.1 243.4
N3 C4 N9 C8 173.2 179.9
N3 C4 N9 C1' 344.8 359.9
N9 C4 N3 C5 187.7 180.1
N3 C4 C5 C6 0.9 0.1
N3 C4 C5 N7 182.6 180.1
C4 N3 C2 N1 359.2 0.0
C4 N3 C2 N2 179.8 180.0
C5 C4 N9 C8 359.0 0.0
C5 C4 N9 C1' 170.6 180.0
N9 C4 C5 N3 173.1 179.9
C5 C4 N3 C2 356.6 359.9
N1 C6 C5 C4 5.1 360.0
O6 C6 C5 C4 187.2 179.9
C6 C5 C4 N7 178.4 180.0
C4 C5 N7 C8 8.1 360.0
C2 N3 C4 C5 356.6 359.9
N1 C2 N3 N2 179.4 180.0
N3 C2 N1 C6 7.3 0.0
N3 C2 N1 H1 187.3 180.0
N3 C2 N2 C21 8.6 360.0
N3 C2 N2 H21 243.3 179.9
N3 C2 N1 N2 180.6 180.0
N1 C2 N2 C21 189.2 180.0
N1 C2 N2 H21 63.8 359.9
C6 N1 C2 H1 180.0 180.0
C2 N1 C6 O6 169.1 180.0
C2 N1 C6 C5 351.2 360.0
N3 C2 N2 N1 179.5 180.0
N2 C2 N1 C6 186.7 180.0
N2 C2 N1 H1 6.7 0.0
C21 N2 C2 H21 125.3 180.1
C2 N2 C21 C22 81.7 183.4
C2 N2 C21 H211 206.9 60.0
C2 N2 C21 H212 316.4 304.0
C4 C5 C6 N1 5.1 360.0
C6 N1 C2 N2 186.7 180.0
C2 N1 C6 H1 180.0 180.0
O6 C6 N1 C5 178.0 180.1
N1 C6 C5 N7 183.0 180.0
H1 N1 C2 N2 6.7 0.0
C2 N1 H1 C6 180.0 180.0
H1 N1 C6 O6 349.1 0.0
H1 N1 C6 C5 171.2 180.0
C4 C5 C6 O6 187.2 179.9
O6 C6 N1 H1 349.1 0.0
N1 C6 O6 C5 182.4 179.9
O6 C6 C5 N7 5.1 359.9
C4 C5 C6 N7 182.1 180.0
C5 C6 N1 H1 171.2 180.0
N1 C6 C5 O6 177.9 180.1
C6 C5 N7 C8 190.1 180.0
N9 C8 N7 C5 350.7 0.0
C4 C5 N7 C6 178.0 180.0
C5 N7 C8 H8 170.8 180.0
N7 C8 N9 C1' 195.1 180.0
N9 C8 N7 H8 180.0 180.0
H8 C8 N9 C1' 15.0 0.0
N9 C8 H8 N7 180.0 180.0
C2 N2 C21 H21 234.7 179.9
C22 C21 N2 H211 234.7 123.4
C22 C21 N2 H212 125.3 239.5
N2 C21 C22 C23 192.4 298.6
N2 C21 C22 H221 317.7 61.3
N2 C21 C22 H222 67.1 177.8
H211 C21 N2 H212 250.5 116.1
C2 N2 H21 C21 134.0 180.1
H21 N2 C21 C22 206.9 3.5
H21 N2 C21 H211 332.2 240.1
H21 N2 C21 H212 81.7 124.0
C22 C21 N2 H21 206.9 3.5
N2 C21 C22 H211 125.2 238.6
N2 C21 C22 H212 234.8 118.9
H211 C21 C22 H212 109.5 240.3
C23 C22 C21 H221 234.7 237.2
C23 C22 C21 H222 125.3 120.7
C21 C22 C23 S24 116.7 180.0
C21 C22 C23 H231 242.0 60.0
C21 C22 C23 H232 351.5 299.9
H221 C22 C21 H222 250.6 243.5
H211 C21 N2 H21 332.2 240.1
N2 C21 H211 C22 238.7 124.3
N2 C21 H211 H212 119.3 244.9
C22 C21 H211 H212 240.6 120.5
H211 C21 C22 C23 67.2 60.0
H211 C21 C22 H221 192.5 182.8
H211 C21 C22 H222 301.9 299.3
H212 C21 N2 H21 81.7 124.0
N2 C21 H212 C22 121.3 237.4
N2 C21 H212 H211 240.7 115.8
C22 C21 H212 H211 119.4 238.4
H212 C21 C22 C23 317.6 179.7
H212 C21 C22 H221 83.0 302.4
H212 C21 C22 H222 192.3 59.0
C23 C22 C21 H211 67.2 60.0
C23 C22 C21 H212 317.6 179.7
C21 C22 C23 H221 125.3 122.3
C21 C22 C23 H222 234.7 240.1
H221 C22 C23 H222 109.4 117.7
S24 C23 C22 H231 234.7 120.0
S24 C23 C22 H232 125.3 240.1
C22 C23 S24 H24 180.0 31.7
H231 C23 C22 H232 250.5 120.1
H221 C22 C21 H211 192.5 182.8
H221 C22 C21 H212 83.0 302.4
C21 C22 H221 C23 245.5 235.9
C21 C22 H221 H222 122.7 116.9
C23 C22 H221 H222 237.2 241.0
H221 C22 C23 S24 351.5 57.7
H221 C22 C23 H231 116.8 297.7
H221 C22 C23 H232 226.2 177.6
H222 C22 C21 H211 301.9 299.3
H222 C22 C21 H212 192.3 59.0
C21 C22 H222 C23 114.5 122.6
C21 C22 H222 H221 237.3 242.1
C23 C22 H222 H221 122.8 119.5
H222 C22 C23 S24 242.0 299.9
H222 C22 C23 H231 7.3 180.0
H222 C22 C23 H232 116.8 59.9
S24 C23 C22 H221 351.5 57.7
S24 C23 C22 H222 242.0 299.9
C22 C23 S24 H231 125.3 238.1
C22 C23 S24 H232 234.8 121.3
H231 C23 S24 H232 109.5 243.2
H231 C23 C22 H221 116.8 297.7
H231 C23 C22 H222 7.3 180.0
C22 C23 H231 S24 215.6 121.5
C22 C23 H231 H232 107.7 238.4
S24 C23 H231 H232 252.1 116.9
H231 C23 S24 H24 54.7 153.6
H232 C23 C22 H221 226.2 177.6
H232 C23 C22 H222 116.8 59.9
C22 C23 H232 S24 144.4 238.7
C22 C23 H232 H231 252.3 121.9
S24 C23 H232 H231 107.9 243.3
H232 C23 S24 H24 305.2 270.4
H24 S24 C23 H231 54.7 153.6
H24 S24 C23 H232 305.2 270.4
N9 C1' C2' O4' 127.3 121.8
N9 C1' C2' H1' 250.4 239.8
C3' C2' C1' H2' 234.7 116.8
C3' C2' C1' H2'' 125.3 237.9
C1' C2' C3' C4' 36.2 325.2
C1' C2' C3' O3' 152.2 81.3
C1' C2' C3' H3' 271.9 201.3
H2' C2' C1' H2'' 250.6 121.1
C4' O4' C1' C2' 12.1 342.7
O4' C1' C2' H1' 123.2 117.9
C1' C2' C3' H2' 125.3 242.9
C1' C2' C3' H2'' 234.8 120.4
C3' C2' C1' O4' 328.2 32.8
C3' C2' C1' H1' 205.0 274.8
H2' C2' C3' H2'' 109.5 237.5
C5' C4' C3' C2' 202.2 267.4
O4' C4' C3' C2' 331.1 25.9
C2' C3' C4' H4' 91.2 143.6
C4' C3' C2' O3' 244.0 243.9
C4' C3' C2' H3' 124.2 123.9
O3' C3' C2' H3' 240.3 240.1
C2' C3' O3' HO3' 180.0 294.7
C1' C2' H2' C3' 237.4 111.5
C1' C2' H2' H2'' 118.6 237.1
H2' C2' C1' O4' 93.5 276.0
H2' C2' C1' H1' 330.3 158.0
C3' C2' H2' H2'' 241.3 125.7
H2' C2' C3' C4' 270.9 82.3
H2' C2' C3' O3' 26.9 198.4
H2' C2' C3' H3' 146.7 318.4
C1' C2' H2'' C3' 122.6 245.4
C1' C2' H2'' H2' 241.3 122.1
H2'' C2' C1' O4' 202.9 154.9
H2'' C2' C1' H1' 79.7 37.0
C3' C2' H2'' H2' 118.7 236.7
H2'' C2' C3' C4' 161.4 204.8
H2'' C2' C3' O3' 277.4 320.9
H2'' C2' C3' H3' 37.2 80.9
O5' C5' C4' H5' 125.3 119.5
O5' C5' C4' H5'' 234.8 240.4
C2' C3' C4' C5' 202.2 267.4
H5' C5' C4' H5'' 109.5 120.9
O4' C4' C5' C3' 230.6 242.3
O4' C4' C5' H4' 120.3 117.1
C5' C4' O4' C1' 145.2 116.0
C3' C4' C5' H4' 249.8 234.8
C5' C4' C3' O3' 87.9 152.1
C5' C4' C3' H3' 327.8 31.2
O5' C5' H5' C4' 231.5 240.8
O5' C5' H5' H5'' 115.7 119.5
C4' C5' H5' H5'' 244.2 238.7
H5' C5' C4' O4' 185.2 302.3
H5' C5' C4' C3' 314.6 60.0
H5' C5' C4' H4' 64.9 185.2
O5' C5' H5'' C4' 128.5 119.3
O5' C5' H5'' H5' 244.3 240.5
C4' C5' H5'' H5' 115.8 121.2
H5'' C5' C4' O4' 75.6 181.4
H5'' C5' C4' C3' 205.1 299.1
H5'' C5' C4' H4' 315.3 64.3
N9 C1' O4' C4' 240.4 218.2
C2' C1' O4' C4' 12.1 342.7
C2' C3' C4' O4' 331.1 25.9
O4' C4' C5' H5' 185.2 302.3
O4' C4' C5' H5'' 75.6 181.4
C5' C4' O4' C3' 134.2 121.5
C5' C4' O4' H4' 246.6 241.9
C3' C4' O4' H4' 112.3 120.5
O4' C4' C3' O3' 216.8 270.6
O4' C4' C3' H3' 96.7 149.7
C4' O4' C1' H1' 129.8 103.0
C4' C3' C2' H2' 270.9 82.3
C4' C3' C2' H2'' 161.4 204.8
C2' C3' C4' O3' 114.3 115.3
C2' C3' C4' H3' 234.4 236.2
C3' C4' C5' H5' 314.6 60.0
C3' C4' C5' H5'' 205.1 299.1
C5' C4' C3' O4' 231.1 241.5
C5' C4' C3' H4' 111.1 123.8
O4' C4' C3' H4' 239.9 242.3
C3' C4' O4' C1' 11.0 354.5
O3' C3' C4' H3' 120.1 120.8
C4' C3' O3' HO3' 286.8 46.6
H4' C4' C5' H5' 64.9 185.2
H4' C4' C5' H5'' 315.3 64.3
C5' C4' H4' O4' 117.7 117.2
C5' C4' H4' C3' 236.0 234.4
O4' C4' H4' C3' 118.3 117.1
H4' C4' O4' C1' 258.7 234.1
H4' C4' C3' O3' 336.8 28.3
H4' C4' C3' H3' 216.8 267.5
N9 C1' O4' C2' 228.3 235.5
N9 C1' O4' H1' 110.6 115.2
O4' C1' C2' C3' 328.2 32.8
O4' C1' C2' H2' 93.5 276.0
O4' C1' C2' H2'' 202.9 154.9
C2' C1' O4' H1' 242.3 239.7
C1' O4' C4' C3' 11.0 354.5
C1' O4' C4' H4' 258.7 234.1
N9 C1' H1' C2' 124.9 125.0
N9 C1' H1' O4' 240.3 242.1
H1' C1' C2' C3' 205.0 274.8
H1' C1' C2' H2' 330.3 158.0
H1' C1' C2' H2'' 79.7 37.0
C2' C1' H1' O4' 115.4 117.1
O3' C3' C2' H2' 26.9 198.4
O3' C3' C2' H2'' 277.4 320.9
C2' C3' O3' C4' 253.2 248.1
C2' C3' O3' H3' 127.1 123.6
O3' C3' C4' H4' 336.8 28.3
C4' C3' O3' H3' 233.9 235.5
H3' C3' C2' H2' 146.7 318.4
H3' C3' C2' H2'' 37.2 80.9
C2' C3' H3' C4' 114.6 117.9
C2' C3' H3' O3' 238.1 239.7
H3' C3' C4' H4' 216.8 267.5
C4' C3' H3' O3' 123.5 121.8
H3' C3' O3' HO3' 52.9 171.1
HO3' O3' C3' H3' 52.9 171.1