PDB Chemical Component MRD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MRD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.520	1.530
C1	H1C1	1.100	1.089
C1	H1C2	1.100	1.090
C1	H1C3	1.100	1.090
C2	O2	1.456	1.428
C2	CM	1.529	1.529
C2	C3	1.535	1.530
O2	H2	0.990	0.967
CM	HMC1	1.100	1.090
CM	HMC2	1.100	1.089
CM	HMC3	1.101	1.090
C3	C4	1.495	1.529
C3	H3C1	1.100	1.090
C3	H3C2	1.100	1.090
C4	O4	1.455	1.429
C4	C5	1.542	1.531
C4	H4	1.100	1.090
O4	HA	0.990	0.966
C5	H5C1	1.100	1.089
C5	H5C2	1.100	1.090
C5	H5C3	1.100	1.090

Bond Angles for MRD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	H1C1	109.5	109.5
C2	C1	H1C2	109.5	109.4
C2	C1	H1C3	109.5	109.4
C1	C2	O2	106.7	109.5
C1	C2	CM	113.6	109.5
C1	C2	C3	113.2	109.5
H1C1	C1	H1C2	109.5	109.5
H1C1	C1	H1C3	109.5	109.5
H1C2	C1	H1C3	109.5	109.5
O2	C2	CM	110.6	109.5
O2	C2	C3	105.6	109.5
C2	O2	H2	109.5	106.8
CM	C2	C3	106.9	109.5
C2	CM	HMC1	109.5	109.5
C2	CM	HMC2	109.5	109.5
C2	CM	HMC3	109.5	109.5
C2	C3	C4	114.5	109.4
C2	C3	H3C1	108.2	109.5
C2	C3	H3C2	106.5	109.5
HMC1	CM	HMC2	109.5	109.4
HMC1	CM	HMC3	109.5	109.4
HMC2	CM	HMC3	109.5	109.5
C4	C3	H3C1	108.2	109.5
C4	C3	H3C2	106.5	109.5
C3	C4	O4	114.3	109.5
C3	C4	C5	108.7	109.5
C3	C4	H4	105.3	109.5
H3C1	C3	H3C2	113.1	109.5
O4	C4	C5	104.7	109.4
O4	C4	H4	109.2	109.5
C4	O4	HA	109.5	106.8
C5	C4	H4	114.8	109.5
C4	C5	H5C1	109.5	109.5
C4	C5	H5C2	109.4	109.5
C4	C5	H5C3	109.4	109.5
H5C1	C5	H5C2	109.5	109.5
H5C1	C5	H5C3	109.5	109.4
H5C2	C5	H5C3	109.5	109.4

Torsion Angles for MRD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H1C1	C1	C2	H1C2	240.0	240.0
H1C1	C1	C2	H1C3	120.0	120.0
H1C2	C1	C2	H1C3	240.0	240.1
O2	C2	C1	CM	237.9	240.0
O2	C2	C1	C3	115.6	120.0
C1	C2	O2	H2	174.4	300.0
CM	C2	C1	C3	237.8	240.0
C1	C2	CM	HMC1	61.8	60.0
C1	C2	CM	HMC2	181.9	180.0
C1	C2	CM	HMC3	301.8	300.1
C1	C2	C3	C4	307.6	180.0
C1	C2	C3	H3C1	68.4	60.0
C1	C2	C3	H3C2	190.2	300.0
C2	C1	H1C1	H1C2	120.0	120.0
C2	C1	H1C1	H1C3	240.0	240.0
H1C1	C1	C2	O2	164.2	300.0
H1C1	C1	C2	CM	286.3	60.0
H1C1	C1	C2	C3	48.5	180.0
H1C2	C1	H1C1	H1C3	120.0	120.0
C2	C1	H1C2	H1C1	240.0	240.0
C2	C1	H1C2	H1C3	120.0	119.9
H1C2	C1	C2	O2	284.2	60.0
H1C2	C1	C2	CM	46.3	180.1
H1C2	C1	C2	C3	168.5	300.0
H1C1	C1	H1C2	H1C3	240.0	239.9
C2	C1	H1C3	H1C1	120.0	120.0
C2	C1	H1C3	H1C2	240.0	240.1
H1C3	C1	C2	O2	44.2	180.0
H1C3	C1	C2	CM	166.3	300.0
H1C3	C1	C2	C3	288.5	60.0
H1C1	C1	H1C3	H1C2	120.0	120.1
O2	C2	C1	H1C1	164.2	300.0
O2	C2	C1	H1C2	284.2	60.0
O2	C2	C1	H1C3	44.2	180.0
C1	C2	O2	CM	124.0	120.0
C1	C2	O2	C3	239.4	240.0
CM	C2	O2	C3	115.3	120.0
O2	C2	CM	HMC1	181.8	180.0
O2	C2	CM	HMC2	301.8	300.0
O2	C2	CM	HMC3	61.8	60.1
O2	C2	C3	C4	191.3	60.0
O2	C2	C3	H3C1	312.1	300.0
O2	C2	C3	H3C2	73.9	180.0
CM	C2	C1	H1C1	286.3	60.0
CM	C2	C1	H1C2	46.3	180.1
CM	C2	C1	H1C3	166.3	300.0
C1	C2	CM	O2	240.1	240.0
C1	C2	CM	C3	125.6	120.0
O2	C2	CM	C3	245.5	240.0
CM	C2	O2	H2	50.4	179.9
CM	C2	C3	C4	73.5	300.0
CM	C2	C3	H3C1	194.3	180.0
CM	C2	C3	H3C2	316.1	60.0
HMC1	CM	C2	HMC2	240.0	240.0
HMC1	CM	C2	HMC3	120.0	119.9
HMC2	CM	C2	HMC3	240.0	239.9
C3	C2	C1	H1C1	48.5	180.0
C3	C2	C1	H1C2	168.5	300.0
C3	C2	C1	H1C3	288.5	60.0
C1	C2	C3	O2	116.3	120.0
C1	C2	C3	CM	234.1	240.0
O2	C2	C3	CM	117.8	120.0
C3	C2	O2	H2	295.0	59.9
C3	C2	CM	HMC1	296.2	300.0
C3	C2	CM	HMC2	56.3	60.0
C3	C2	CM	HMC3	176.2	180.1
C4	C3	C2	H3C1	239.2	120.0
C4	C3	C2	H3C2	117.4	240.0
C2	C3	C4	O4	288.4	300.0
C2	C3	C4	C5	171.8	180.0
C2	C3	C4	H4	48.3	60.0
H3C1	C3	C2	H3C2	238.2	120.0
H2	O2	C2	CM	50.4	179.9
H2	O2	C2	C3	295.0	59.9
HMC1	CM	C2	C3	296.2	300.0
C2	CM	HMC1	HMC2	120.0	120.0
C2	CM	HMC1	HMC3	240.0	240.0
HMC2	CM	HMC1	HMC3	120.0	120.0
HMC2	CM	C2	C3	56.3	60.0
C2	CM	HMC2	HMC1	240.0	240.0
C2	CM	HMC2	HMC3	120.0	120.0
HMC1	CM	HMC2	HMC3	240.0	240.1
HMC3	CM	C2	C3	176.2	180.1
C2	CM	HMC3	HMC1	120.0	120.0
C2	CM	HMC3	HMC2	240.0	239.9
HMC1	CM	HMC3	HMC2	120.0	120.0
C2	C3	C4	H3C1	120.8	240.0
C2	C3	C4	H3C2	242.6	120.0
H3C1	C3	C4	H3C2	121.8	240.0
O4	C4	C3	C5	116.6	120.0
O4	C4	C3	H4	240.1	240.0
C3	C4	O4	HA	177.9	300.0
C5	C4	C3	H4	123.5	120.0
C3	C4	C5	H5C1	183.9	180.0
C3	C4	C5	H5C2	303.9	300.1
C3	C4	C5	H5C3	63.9	60.0
C2	C3	H3C1	C4	235.4	120.0
C2	C3	H3C1	H3C2	117.7	240.0
C4	C3	H3C1	H3C2	242.3	120.0
H3C1	C3	C4	O4	167.7	60.0
H3C1	C3	C4	C5	51.1	300.0
H3C1	C3	C4	H4	287.6	180.0
C2	C3	H3C2	C4	122.6	240.0
C2	C3	H3C2	H3C1	241.3	120.0
C4	C3	H3C2	H3C1	118.7	240.0
H3C2	C3	C4	O4	45.8	180.0
H3C2	C3	C4	C5	289.3	60.0
H3C2	C3	C4	H4	165.7	300.0
O4	C4	C3	H3C1	167.7	60.0
O4	C4	C3	H3C2	45.8	180.0
C3	C4	O4	C5	241.2	240.0
C3	C4	O4	H4	117.7	120.0
C5	C4	O4	H4	236.5	240.0
O4	C4	C5	H5C1	61.3	59.9
O4	C4	C5	H5C2	181.3	180.0
O4	C4	C5	H5C3	301.3	300.0
C5	C4	C3	H3C1	51.1	300.0
C5	C4	C3	H3C2	289.3	60.0
C3	C4	C5	O4	122.6	120.0
C3	C4	C5	H4	242.4	240.0
O4	C4	C5	H4	119.8	120.0
C5	C4	O4	HA	296.7	60.0
H5C1	C5	C4	H5C2	240.0	239.9
H5C1	C5	C4	H5C3	120.0	120.0
H5C2	C5	C4	H5C3	240.0	240.1
H4	C4	C3	H3C1	287.6	180.0
H4	C4	C3	H3C2	165.7	300.0
C3	C4	H4	O4	236.8	239.9
C3	C4	H4	C5	119.5	120.0
O4	C4	H4	C5	242.8	240.1
H4	C4	O4	HA	60.1	180.0
H4	C4	C5	H5C1	301.5	300.0
H4	C4	C5	H5C2	61.5	60.1
H4	C4	C5	H5C3	181.5	180.0
HA	O4	C4	C5	296.7	60.0
HA	O4	C4	H4	60.1	180.0
H5C1	C5	C4	H4	301.5	300.0
C4	C5	H5C1	H5C2	120.0	120.1
C4	C5	H5C1	H5C3	240.0	240.0
H5C2	C5	H5C1	H5C3	120.1	120.0
H5C2	C5	C4	H4	61.5	60.1
C4	C5	H5C2	H5C1	240.0	239.9
C4	C5	H5C2	H5C3	119.9	119.9
H5C1	C5	H5C2	H5C3	239.9	240.0
H5C3	C5	C4	H4	181.5	180.0
C4	C5	H5C3	H5C1	120.0	120.0
C4	C5	H5C3	H5C2	240.1	240.0
H5C1	C5	H5C3	H5C2	120.1	120.0