PDB Chemical Component MQD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MQD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.528	1.530
C1	H1C1	1.100	1.091
C1	H1C2	1.100	1.090
C1	H1C3	1.100	1.089
C2	O2	1.454	1.428
C2	CM	1.538	1.530
C2	C3	1.507	1.528
O2	H2	0.991	0.967
CM	O6	1.440	1.428
CM	HMC1	1.100	1.090
CM	HMC2	1.100	1.090
C3	C4	1.542	1.530
C3	H3C1	1.100	1.091
C3	H3C2	1.101	1.090
C4	O4	1.432	1.428
C4	C5	1.525	1.530
C4	H4	1.100	1.090
O4	HA	0.990	0.968
C5	H5C1	1.100	1.090
C5	H5C2	1.100	1.089
C5	H5C3	1.099	1.090
O6	H6	0.990	0.967

Bond Angles for MQD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	H1C1	109.5	109.4
C2	C1	H1C2	109.4	109.5
C2	C1	H1C3	109.4	109.5
C1	C2	O2	110.1	109.4
C1	C2	CM	111.6	109.4
C1	C2	C3	112.4	109.5
H1C1	C1	H1C2	109.5	109.4
H1C1	C1	H1C3	109.5	109.4
H1C2	C1	H1C3	109.5	109.5
O2	C2	CM	111.1	109.5
O2	C2	C3	104.1	109.5
C2	O2	H2	109.5	106.8
CM	C2	C3	107.3	109.5
C2	CM	O6	110.4	109.5
C2	CM	HMC1	109.2	109.5
C2	CM	HMC2	108.9	109.4
C2	C3	C4	113.7	109.5
C2	C3	H3C1	108.4	109.5
C2	C3	H3C2	107.0	109.5
O6	CM	HMC1	109.2	109.5
O6	CM	HMC2	108.9	109.5
CM	O6	H6	109.5	106.8
HMC1	CM	HMC2	110.1	109.5
C4	C3	H3C1	108.4	109.5
C4	C3	H3C2	107.0	109.4
C3	C4	O4	110.3	109.5
C3	C4	C5	107.3	109.5
C3	C4	H4	110.2	109.4
H3C1	C3	H3C2	112.4	109.4
O4	C4	C5	108.7	109.5
O4	C4	H4	108.7	109.4
C4	O4	HA	109.5	106.7
C5	C4	H4	111.7	109.4
C4	C5	H5C1	109.5	109.5
C4	C5	H5C2	109.5	109.5
C4	C5	H5C3	109.5	109.5
H5C1	C5	H5C2	109.4	109.4
H5C1	C5	H5C3	109.5	109.4
H5C2	C5	H5C3	109.5	109.6

Torsion Angles for MQD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H1C1	C1	C2	H1C2	240.0	240.0
H1C1	C1	C2	H1C3	120.0	119.9
H1C2	C1	C2	H1C3	240.0	239.9
O2	C2	C1	CM	236.1	240.0
O2	C2	C1	C3	115.5	120.0
C1	C2	O2	H2	156.5	180.0
CM	C2	C1	C3	239.4	240.0
C1	C2	CM	O6	206.3	300.0
C1	C2	CM	HMC1	326.5	60.0
C1	C2	CM	HMC2	86.7	180.0
C1	C2	C3	C4	280.5	60.0
C1	C2	C3	H3C1	41.1	300.0
C1	C2	C3	H3C2	162.6	180.0
C2	C1	H1C1	H1C2	120.0	120.0
C2	C1	H1C1	H1C3	240.0	240.0
H1C1	C1	C2	O2	56.5	180.0
H1C1	C1	C2	CM	180.4	300.0
H1C1	C1	C2	C3	301.0	60.0
H1C2	C1	H1C1	H1C3	120.0	120.0
C2	C1	H1C2	H1C1	240.0	240.0
C2	C1	H1C2	H1C3	119.9	120.1
H1C2	C1	C2	O2	176.5	300.0
H1C2	C1	C2	CM	300.4	59.9
H1C2	C1	C2	C3	61.0	180.0
H1C1	C1	H1C2	H1C3	240.0	240.1
C2	C1	H1C3	H1C1	120.0	119.9
C2	C1	H1C3	H1C2	240.1	239.9
H1C3	C1	C2	O2	296.5	60.1
H1C3	C1	C2	CM	60.4	180.0
H1C3	C1	C2	C3	180.9	300.1
H1C1	C1	H1C3	H1C2	120.0	120.0
O2	C2	C1	H1C1	56.5	180.0
O2	C2	C1	H1C2	176.5	300.0
O2	C2	C1	H1C3	296.5	60.1
C1	C2	O2	CM	124.2	119.9
C1	C2	O2	C3	239.4	240.0
CM	C2	O2	C3	115.2	120.1
O2	C2	CM	O6	329.6	60.0
O2	C2	CM	HMC1	89.8	180.0
O2	C2	CM	HMC2	210.1	300.0
O2	C2	C3	C4	161.4	300.0
O2	C2	C3	H3C1	282.0	180.0
O2	C2	C3	H3C2	43.4	60.0
CM	C2	C1	H1C1	180.4	300.0
CM	C2	C1	H1C2	300.4	59.9
CM	C2	C1	H1C3	60.4	180.0
C1	C2	CM	O2	236.7	240.1
C1	C2	CM	C3	123.5	120.0
O2	C2	CM	C3	246.8	239.9
CM	C2	O2	H2	32.3	60.1
CM	C2	C3	C4	43.6	180.0
CM	C2	C3	H3C1	164.2	60.0
CM	C2	C3	H3C2	285.6	300.0
O6	CM	C2	HMC1	239.9	240.0
O6	CM	C2	HMC2	119.6	120.0
C2	CM	O6	H6	343.4	180.0
HMC1	CM	C2	HMC2	239.7	240.0
C3	C2	C1	H1C1	301.0	60.0
C3	C2	C1	H1C2	61.0	180.0
C3	C2	C1	H1C3	180.9	300.1
C1	C2	C3	O2	119.1	120.0
C1	C2	C3	CM	236.9	240.0
O2	C2	C3	CM	117.8	120.0
C3	C2	O2	H2	277.1	300.0
C3	C2	CM	O6	82.8	180.0
C3	C2	CM	HMC1	203.0	300.0
C3	C2	CM	HMC2	323.2	60.0
C4	C3	C2	H3C1	239.4	120.0
C4	C3	C2	H3C2	117.9	240.0
C2	C3	C4	O4	70.0	59.9
C2	C3	C4	C5	188.2	180.0
C2	C3	C4	H4	309.9	300.0
H3C1	C3	C2	H3C2	238.5	120.0
H2	O2	C2	CM	32.3	60.1
H2	O2	C2	C3	277.1	300.0
O6	CM	C2	C3	82.8	180.0
C2	CM	O6	HMC1	120.2	120.0
C2	CM	O6	HMC2	240.4	240.1
HMC1	CM	O6	HMC2	120.3	120.0
HMC1	CM	C2	C3	203.0	300.0
C2	CM	HMC1	O6	239.1	240.0
C2	CM	HMC1	HMC2	119.6	119.9
O6	CM	HMC1	HMC2	240.4	240.0
HMC1	CM	O6	H6	223.3	60.0
HMC2	CM	C2	C3	323.2	60.0
C2	CM	HMC2	O6	120.5	120.0
C2	CM	HMC2	HMC1	240.2	240.0
O6	CM	HMC2	HMC1	119.7	120.0
HMC2	CM	O6	H6	103.0	300.0
C2	C3	C4	H3C1	120.6	240.0
C2	C3	C4	H3C2	242.1	120.0
H3C1	C3	C4	H3C2	121.5	240.1
O4	C4	C3	C5	241.8	239.9
O4	C4	C3	H4	120.0	120.0
C3	C4	O4	HA	62.9	60.1
C5	C4	C3	H4	238.2	240.1
C3	C4	C5	H5C1	82.6	180.0
C3	C4	C5	H5C2	202.6	299.9
C3	C4	C5	H5C3	322.6	60.0
C2	C3	H3C1	C4	236.2	120.1
C2	C3	H3C1	H3C2	118.1	240.0
C4	C3	H3C1	H3C2	241.9	119.9
H3C1	C3	C4	O4	309.4	180.0
H3C1	C3	C4	C5	67.6	300.1
H3C1	C3	C4	H4	189.3	60.0
C2	C3	H3C2	C4	122.2	240.0
C2	C3	H3C2	H3C1	241.1	120.0
C4	C3	H3C2	H3C1	118.9	240.1
H3C2	C3	C4	O4	187.9	299.9
H3C2	C3	C4	C5	306.1	60.0
H3C2	C3	C4	H4	67.9	179.9
O4	C4	C3	H3C1	309.4	180.0
O4	C4	C3	H3C2	187.9	299.9
C3	C4	O4	C5	117.3	120.1
C3	C4	O4	H4	239.1	240.0
C5	C4	O4	H4	121.8	119.9
O4	C4	C5	H5C1	201.8	300.1
O4	C4	C5	H5C2	321.8	60.0
O4	C4	C5	H5C3	81.8	180.1
C5	C4	C3	H3C1	67.6	300.1
C5	C4	C3	H3C2	306.1	60.0
C3	C4	C5	O4	240.8	239.9
C3	C4	C5	H4	120.8	120.0
O4	C4	C5	H4	240.0	240.1
C5	C4	O4	HA	305.5	300.0
H5C1	C5	C4	H5C2	240.0	240.1
H5C1	C5	C4	H5C3	120.0	120.0
H5C2	C5	C4	H5C3	240.0	239.9
H4	C4	C3	H3C1	189.3	60.0
H4	C4	C3	H3C2	67.9	179.9
C3	C4	H4	O4	120.9	120.0
C3	C4	H4	C5	240.9	240.0
O4	C4	H4	C5	120.0	120.0
H4	C4	O4	HA	183.8	180.0
H4	C4	C5	H5C1	321.8	60.0
H4	C4	C5	H5C2	81.7	180.0
H4	C4	C5	H5C3	201.7	300.1
HA	O4	C4	C5	305.5	300.0
HA	O4	C4	H4	183.8	180.0
H5C1	C5	C4	H4	321.8	60.0
C4	C5	H5C1	H5C2	120.0	120.0
C4	C5	H5C1	H5C3	240.0	240.0
H5C2	C5	H5C1	H5C3	120.0	120.0
H5C2	C5	C4	H4	81.7	180.0
C4	C5	H5C2	H5C1	240.0	240.0
C4	C5	H5C2	H5C3	120.0	120.0
H5C1	C5	H5C2	H5C3	240.0	240.0
H5C3	C5	C4	H4	201.7	300.1
C4	C5	H5C3	H5C1	120.0	120.0
C4	C5	H5C3	H5C2	240.0	240.0
H5C1	C5	H5C3	H5C2	119.9	120.0
H6	O6	CM	HMC1	223.3	60.0
H6	O6	CM	HMC2	103.0	300.0