Atom Nomenclature for MPZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MPZ

Atom Name (V3) Atom Name (V2)
O16 O16
C15 C15
C14 C14
C13 C13
C12 C12
C11 C11
C10 C10
C09 C09
C08 C08
N07 N07
C06 C06
C05 C05
C04 C04
C03 C03
NP2 NP2
C01 C01
N17 N17
C18 C18
C19 C19
C20 C20
C21 C21
C23 C23
C22 C22
N24 N24
C25 C25
N26 N26
C27 C27
C28 C28
C30 C30
N29 N29
C31 C31
C32 C32
C36 C36
C35 C35
N34 N34
C33 C33
H13 H13
H12 H12
H11 H11
H10 H10
H081 1H08
H082 2H08
H061 1H06
H062 2H06
H051 1H05
H052 2H05
H041 1H04
H042 2H04
H031 1H03
H032 2H03
H011 1H01
H012 2H01
H013 3H01
H17 H17
H19 H19
H20 H20
H21 H21
H22 H22
H24 H24
H27 H27
H28 H28
H32 H32
H36 H36
H35 H35
H33 H33