PDB Chemical Component MPQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MPQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CM |
1.455 |
1.469 |
| N |
CA |
1.429 |
1.469 |
| N |
H |
1.000 |
1.009 |
| CM |
HM1 |
1.100 |
1.090 |
| CM |
HM2 |
1.100 |
1.090 |
| CM |
HM3 |
1.100 |
1.090 |
| CA |
CG |
1.482 |
1.507 |
| CA |
C |
1.498 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CG |
CD1 |
1.356 |
1.382 |
| CG |
CD2 |
1.372 |
1.382 |
| CD1 |
CE1 |
1.351 |
1.382 |
| CD1 |
HD11 |
1.079 |
1.080 |
| CD2 |
CE2 |
1.348 |
1.383 |
| CD2 |
HD21 |
1.080 |
1.080 |
| CE1 |
CZ |
1.348 |
1.382 |
| CE1 |
HE11 |
1.080 |
1.080 |
| CE2 |
CZ |
1.342 |
1.383 |
| CE2 |
HE21 |
1.080 |
1.079 |
| CZ |
HZ1 |
1.080 |
1.079 |
| C |
O |
1.213 |
1.208 |
| C |
OXT |
1.341 |
1.343 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for MPQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CM |
N |
CA |
120.5 |
111.0 |
| CM |
N |
H |
105.9 |
111.0 |
| N |
CM |
HM1 |
109.5 |
109.4 |
| N |
CM |
HM2 |
109.5 |
109.5 |
| N |
CM |
HM3 |
109.5 |
109.4 |
| CA |
N |
H |
105.9 |
111.0 |
| N |
CA |
CG |
112.3 |
109.5 |
| N |
CA |
C |
108.8 |
109.4 |
| N |
CA |
HA |
107.1 |
109.5 |
| HM1 |
CM |
HM2 |
109.5 |
109.5 |
| HM1 |
CM |
HM3 |
109.5 |
109.5 |
| HM2 |
CM |
HM3 |
109.5 |
109.5 |
| CG |
CA |
C |
106.3 |
109.5 |
| CG |
CA |
HA |
109.5 |
109.5 |
| CA |
CG |
CD1 |
120.8 |
120.0 |
| CA |
CG |
CD2 |
120.7 |
120.0 |
| C |
CA |
HA |
112.9 |
109.5 |
| CA |
C |
O |
118.2 |
120.0 |
| CA |
C |
OXT |
118.2 |
120.0 |
| CD1 |
CG |
CD2 |
118.1 |
120.0 |
| CG |
CD1 |
CE1 |
120.4 |
120.0 |
| CG |
CD1 |
HD11 |
119.8 |
120.0 |
| CG |
CD2 |
CE2 |
121.1 |
120.0 |
| CG |
CD2 |
HD21 |
119.5 |
120.0 |
| CE1 |
CD1 |
HD11 |
119.8 |
120.0 |
| CD1 |
CE1 |
CZ |
120.6 |
120.0 |
| CD1 |
CE1 |
HE11 |
119.7 |
120.0 |
| CE2 |
CD2 |
HD21 |
119.4 |
120.0 |
| CD2 |
CE2 |
CZ |
119.7 |
119.9 |
| CD2 |
CE2 |
HE21 |
120.1 |
120.0 |
| CZ |
CE1 |
HE11 |
119.7 |
119.9 |
| CE1 |
CZ |
CE2 |
120.1 |
120.0 |
| CE1 |
CZ |
HZ1 |
119.9 |
120.1 |
| CZ |
CE2 |
HE21 |
120.1 |
120.0 |
| CE2 |
CZ |
HZ1 |
120.0 |
119.9 |
| O |
C |
OXT |
123.6 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for MPQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CM |
H |
240.0 |
236.1 |
| CM |
N |
CA |
CG |
355.2 |
154.5 |
| CM |
N |
CA |
C |
112.6 |
274.5 |
| CM |
N |
CA |
HA |
235.0 |
34.4 |
| HM1 |
CM |
N |
HM2 |
240.0 |
240.0 |
| HM1 |
CM |
N |
HM3 |
120.0 |
119.9 |
| HM2 |
CM |
N |
HM3 |
240.0 |
240.0 |
| CM |
N |
CA |
H |
120.0 |
124.0 |
| CA |
N |
CM |
HM1 |
180.0 |
295.3 |
| CA |
N |
CM |
HM2 |
300.0 |
55.3 |
| CA |
N |
CM |
HM3 |
60.0 |
175.4 |
| CG |
CA |
N |
C |
242.6 |
240.0 |
| CG |
CA |
N |
HA |
120.2 |
120.1 |
| N |
CA |
CG |
CD1 |
286.9 |
225.6 |
| N |
CA |
CG |
CD2 |
113.6 |
45.3 |
| C |
CA |
N |
HA |
237.6 |
240.0 |
| N |
CA |
C |
O |
336.2 |
333.8 |
| N |
CA |
C |
OXT |
154.2 |
153.9 |
| CM |
N |
H |
CA |
230.9 |
236.1 |
| H |
N |
CM |
HM1 |
300.0 |
59.3 |
| H |
N |
CM |
HM2 |
60.0 |
179.3 |
| H |
N |
CM |
HM3 |
180.0 |
299.3 |
| H |
N |
CA |
CG |
235.2 |
30.6 |
| H |
N |
CA |
C |
352.6 |
150.5 |
| H |
N |
CA |
HA |
115.0 |
270.5 |
| HM1 |
CM |
N |
CA |
180.0 |
295.3 |
| HM1 |
CM |
N |
H |
300.0 |
59.3 |
| N |
CM |
HM1 |
HM2 |
120.0 |
120.0 |
| N |
CM |
HM1 |
HM3 |
240.0 |
240.1 |
| HM2 |
CM |
HM1 |
HM3 |
120.0 |
120.0 |
| HM2 |
CM |
N |
CA |
300.0 |
55.3 |
| HM2 |
CM |
N |
H |
60.0 |
179.3 |
| N |
CM |
HM2 |
HM1 |
240.0 |
240.0 |
| N |
CM |
HM2 |
HM3 |
120.0 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
240.0 |
240.0 |
| HM3 |
CM |
N |
CA |
60.0 |
175.4 |
| HM3 |
CM |
N |
H |
180.0 |
299.3 |
| N |
CM |
HM3 |
HM1 |
120.0 |
119.9 |
| N |
CM |
HM3 |
HM2 |
240.0 |
240.0 |
| HM1 |
CM |
HM3 |
HM2 |
120.0 |
120.0 |
| CG |
CA |
N |
H |
235.2 |
30.6 |
| N |
CA |
CG |
C |
118.9 |
119.9 |
| N |
CA |
CG |
HA |
241.2 |
239.9 |
| C |
CA |
CG |
HA |
122.3 |
120.0 |
| CG |
CA |
C |
O |
97.3 |
93.8 |
| CG |
CA |
C |
OXT |
275.4 |
273.9 |
| CD1 |
CG |
CA |
CD2 |
173.2 |
180.3 |
| CA |
CG |
CD1 |
CE1 |
187.6 |
179.9 |
| CA |
CG |
CD1 |
HD11 |
7.6 |
359.9 |
| CA |
CG |
CD2 |
CE2 |
172.4 |
180.0 |
| CA |
CG |
CD2 |
HD21 |
352.4 |
0.0 |
| C |
CA |
N |
H |
352.6 |
150.5 |
| N |
CA |
C |
CG |
238.9 |
240.0 |
| N |
CA |
C |
HA |
118.7 |
120.0 |
| CG |
CA |
C |
HA |
239.9 |
240.0 |
| C |
CA |
CG |
CD1 |
168.0 |
105.7 |
| C |
CA |
CG |
CD2 |
354.7 |
285.4 |
| O |
C |
CA |
OXT |
181.9 |
179.9 |
| CA |
C |
OXT |
HXT |
182.0 |
179.9 |
| HA |
CA |
N |
H |
115.0 |
270.5 |
| N |
CA |
HA |
CG |
122.0 |
120.0 |
| N |
CA |
HA |
C |
240.2 |
240.0 |
| CG |
CA |
HA |
C |
118.3 |
120.0 |
| HA |
CA |
CG |
CD1 |
45.7 |
345.7 |
| HA |
CA |
CG |
CD2 |
232.4 |
165.4 |
| HA |
CA |
C |
O |
217.4 |
213.8 |
| HA |
CA |
C |
OXT |
35.5 |
33.9 |
| CD1 |
CG |
CA |
C |
168.0 |
105.7 |
| CD1 |
CG |
CA |
HA |
45.7 |
345.7 |
| CA |
CG |
CD1 |
CD2 |
186.6 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
359.0 |
359.7 |
| CD1 |
CG |
CD2 |
HD21 |
179.0 |
179.7 |
| CE1 |
CD1 |
CG |
HD11 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
359.8 |
360.0 |
| CG |
CD1 |
CE1 |
HE11 |
179.8 |
179.9 |
| CD2 |
CG |
CA |
C |
354.7 |
285.4 |
| CD2 |
CG |
CA |
HA |
232.4 |
165.4 |
| CA |
CG |
CD2 |
CD1 |
173.4 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
1.0 |
0.3 |
| CD2 |
CG |
CD1 |
HD11 |
181.0 |
180.2 |
| CE2 |
CD2 |
CG |
HD21 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
0.3 |
0.0 |
| CG |
CD2 |
CE2 |
HE21 |
180.3 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
1.0 |
0.3 |
| CG |
CD1 |
CE1 |
HD11 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE11 |
180.0 |
180.1 |
| CD1 |
CE1 |
CZ |
CE2 |
359.5 |
359.8 |
| CD1 |
CE1 |
CZ |
HZ1 |
179.5 |
179.9 |
| HD11 |
CD1 |
CG |
CD2 |
181.0 |
180.2 |
| CG |
CD1 |
HD11 |
CE1 |
180.0 |
180.0 |
| HD11 |
CD1 |
CE1 |
CZ |
179.8 |
180.0 |
| HD11 |
CD1 |
CE1 |
HE11 |
359.8 |
359.9 |
| CG |
CD2 |
CE2 |
HD21 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
0.5 |
0.2 |
| CZ |
CE2 |
CD2 |
HE21 |
180.0 |
180.1 |
| CD2 |
CE2 |
CZ |
HZ1 |
180.5 |
180.1 |
| CG |
CD2 |
HD21 |
CE2 |
180.0 |
180.0 |
| HD21 |
CD2 |
CE2 |
CZ |
180.2 |
180.0 |
| HD21 |
CD2 |
CE2 |
HE21 |
0.2 |
360.0 |
| CZ |
CE1 |
CD1 |
HD11 |
179.8 |
180.0 |
| CD1 |
CE1 |
CZ |
HE11 |
180.0 |
179.9 |
| CD2 |
CE2 |
CZ |
CE1 |
0.5 |
0.2 |
| CE1 |
CZ |
CE2 |
HE21 |
180.5 |
180.3 |
| CE2 |
CZ |
CE1 |
HZ1 |
180.0 |
179.8 |
| HE11 |
CE1 |
CD1 |
HD11 |
359.8 |
359.9 |
| CD1 |
CE1 |
HE11 |
CZ |
180.0 |
180.1 |
| HE11 |
CE1 |
CZ |
CE2 |
179.5 |
179.8 |
| HE11 |
CE1 |
CZ |
HZ1 |
359.4 |
0.0 |
| CZ |
CE2 |
CD2 |
HD21 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
HE21 |
180.0 |
179.9 |
| CE2 |
CZ |
CE1 |
HE11 |
179.5 |
179.8 |
| CE1 |
CZ |
CE2 |
HZ1 |
180.0 |
180.2 |
| HE21 |
CE2 |
CD2 |
HD21 |
0.2 |
360.0 |
| CD2 |
CE2 |
HE21 |
CZ |
180.0 |
180.1 |
| HE21 |
CE2 |
CZ |
HZ1 |
0.5 |
0.1 |
| HZ1 |
CZ |
CE1 |
HE11 |
359.4 |
0.0 |
| CE1 |
CZ |
HZ1 |
CE2 |
180.0 |
179.8 |
| HZ1 |
CZ |
CE2 |
HE21 |
0.5 |
0.1 |
| O |
C |
CA |
HA |
217.4 |
213.8 |
| CA |
C |
O |
OXT |
177.9 |
180.1 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| OXT |
C |
CA |
HA |
35.5 |
33.9 |
| CA |
C |
OXT |
O |
182.1 |
179.9 |