PDB Chemical Component MPM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MPM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C3 1.426 1.405
C4 C5 1.448 1.399
C4 C4A 1.545 1.476
C3 C2 1.424 1.388
C3 O1 1.378 1.357
C5 C6 1.388 1.379
C5 C5A 1.423 1.508
C4A N2 1.298 1.293
C4A H4AC 1.103 1.080
C2 N1 1.359 1.317
C2 C2A 1.521 1.507
C6 N1 1.367 1.319
C6 HC6 1.102 1.081
O1 HO1 0.950 0.968
C5A O2 1.363 1.429
C5A H5A1 1.115 1.089
C5A H5A2 1.115 1.091
N2 C 1.486 1.464
C2A H2A1 1.115 1.090
C2A H2A2 1.115 1.090
C2A H2A3 1.115 1.090
O2 P1 1.520 1.610
C CA2 1.557 1.530
C CA1 1.603 1.530
C P2 1.682 1.823
P1 O3 1.450 1.480
P1 O5 1.448 1.611
P1 O4 1.430 1.610
CA2 CA3 1.532 1.531
CA2 HA21 1.115 1.090
CA2 HA22 1.115 1.089
CA1 HA11 1.115 1.090
CA1 HA12 1.115 1.090
CA1 HA13 1.115 1.090
P2 O8 1.480 1.610
P2 O6 1.473 1.610
P2 O7 1.495 1.480
O5 HO5 0.950 0.967
O4 HO4 0.950 0.967
O8 HO8 0.951 0.967
O6 HO6 0.951 0.967
CA3 HA31 1.115 1.090
CA3 HA32 1.115 1.090
CA3 HA33 1.115 1.089

Bond Angles for MPM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C4 C5 118.0 118.1
C3 C4 C4A 123.3 120.9
C4 C3 C2 118.6 118.8
C4 C3 O1 121.5 120.6
C5 C4 C4A 118.7 121.0
C4 C5 C6 120.7 119.1
C4 C5 C5A 116.9 120.4
C4 C4A N2 114.4 120.0
C4 C4A H4AC 130.5 119.9
C2 C3 O1 119.9 120.6
C3 C2 N1 120.2 120.8
C3 C2 C2A 120.6 119.6
C3 O1 HO1 121.5 106.8
C6 C5 C5A 122.4 120.5
C5 C6 N1 119.0 121.1
C5 C6 HC6 121.2 119.5
C5 C5A O2 125.2 109.4
C5 C5A H5A1 106.7 109.5
C5 C5A H5A2 106.7 109.4
N2 C4A H4AC 115.1 120.0
C4A N2 C 126.4 120.0
N1 C2 C2A 119.2 119.6
C2 N1 C6 123.4 122.2
C2 C2A H2A1 108.2 109.5
C2 C2A H2A2 120.6 109.5
C2 C2A H2A3 108.2 109.5
N1 C6 HC6 119.8 119.5
O2 C5A H5A1 106.7 109.5
O2 C5A H5A2 106.7 109.5
C5A O2 P1 123.5 106.8
H5A1 C5A H5A2 102.9 109.5
N2 C CA2 104.6 109.5
N2 C CA1 116.0 109.5
N2 C P2 108.8 109.5
H2A1 C2A H2A2 108.2 109.4
H2A1 C2A H2A3 101.7 109.5
H2A2 C2A H2A3 108.2 109.4
O2 P1 O3 108.1 109.5
O2 P1 O5 107.7 109.4
O2 P1 O4 110.8 109.5
CA2 C CA1 103.1 109.4
CA2 C P2 111.0 109.5
C CA2 CA3 112.0 109.4
C CA2 HA21 111.3 109.5
C CA2 HA22 111.3 109.5
CA1 C P2 112.9 109.5
C CA1 HA11 109.8 109.5
C CA1 HA12 116.0 109.5
C CA1 HA13 109.8 109.4
C P2 O8 108.3 109.5
C P2 O6 111.1 109.5
C P2 O7 111.5 109.5
O3 P1 O5 111.6 109.5
O3 P1 O4 104.8 109.5
O5 P1 O4 113.7 109.5
P1 O5 HO5 107.7 106.8
P1 O4 HO4 110.8 106.8
CA3 CA2 HA21 111.3 109.5
CA3 CA2 HA22 111.3 109.5
CA2 CA3 HA31 111.3 109.5
CA2 CA3 HA32 112.0 109.4
CA2 CA3 HA33 111.3 109.5
HA21 CA2 HA22 99.1 109.5
HA11 CA1 HA12 109.8 109.5
HA11 CA1 HA13 100.4 109.5
HA12 CA1 HA13 109.8 109.5
O8 P2 O6 107.7 109.5
O8 P2 O7 109.0 109.5
P2 O8 HO8 108.3 106.8
O6 P2 O7 109.1 109.4
P2 O6 HO6 111.2 106.9
HA31 CA3 HA32 111.3 109.5
HA31 CA3 HA33 99.1 109.5
HA32 CA3 HA33 111.3 109.5

Torsion Angles for MPM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 C4 C3 C4A 181.0 180.2
C3 C4 C5 C6 1.8 359.5
C3 C4 C5 C5A 181.6 180.0
C3 C4 C4A N2 354.2 360.0
C3 C4 C4A H4AC 174.2 180.0
C2 C3 C4 O1 179.8 180.0
C4 C3 C2 N1 359.1 0.0
C4 C3 C2 C2A 180.9 180.0
C4 C3 O1 HO1 180.0 90.0
C3 C4 C5 C4A 179.1 179.8
C5 C4 C3 C2 359.3 0.2
C5 C4 C3 O1 179.6 180.2
C5 C4 C4A N2 173.2 179.7
C5 C4 C4A H4AC 353.2 359.8
C6 C5 C4 C5A 180.1 179.5
C4 C5 C6 N1 358.7 0.5
C4 C5 C6 HC6 178.7 180.3
C4 C5 C5A O2 85.9 179.5
C4 C5 C5A H5A1 320.6 299.5
C4 C5 C5A H5A2 211.2 59.5
C3 C4 C4A C5 181.0 180.2
C4A C4 C3 C2 178.4 180.0
C4A C4 C3 O1 358.6 0.0
C4A C4 C5 C6 182.7 179.8
C4A C4 C5 C5A 2.5 0.2
N2 C4A C4 H4AC 180.0 179.9
C4 C4A N2 C 181.4 180.0
C2 C3 C4 C5 359.3 0.2
C2 C3 C4 C4A 178.4 180.0
C4 C3 C2 O1 180.2 180.0
C2 C3 O1 HO1 0.2 270.0
N1 C2 C3 C2A 178.2 180.0
C3 C2 N1 C6 1.5 360.0
C3 C2 C2A H2A1 54.7 90.0
C3 C2 C2A H2A2 180.0 210.0
C3 C2 C2A H2A3 305.3 330.0
O1 C3 C4 C5 179.6 180.2
O1 C3 C4 C4A 358.6 0.0
C4 C3 O1 C2 179.8 180.0
O1 C3 C2 N1 178.9 180.0
O1 C3 C2 C2A 0.6 0.0
C6 C5 C4 C4A 182.7 179.8
C4 C5 C6 C5A 179.9 180.5
C6 C5 C5A O2 265.8 360.0
C6 C5 C5A H5A1 140.5 120.0
C6 C5 C5A H5A2 31.1 240.0
C2 N1 C6 C5 359.6 359.8
N1 C6 C5 HC6 180.0 180.2
C5A C5 C4 C4A 2.5 0.2
C4 C5 C5A C6 180.1 179.5
C5A C5 C6 N1 178.9 180.0
C5A C5 C6 HC6 358.9 359.8
O2 C5A C5 H5A1 125.3 239.9
O2 C5A C5 H5A2 234.8 120.0
C5 C5A O2 P1 191.8 180.0
H5A1 C5A C5 H5A2 109.5 240.0
C4 C4A N2 H4AC 180.0 180.1
C4A N2 C CA2 101.3 60.0
C4A N2 C CA1 348.5 300.0
C4A N2 C P2 220.0 180.0
C4 C4A H4AC N2 180.0 179.9
H4AC C4A N2 C 1.4 360.0
N1 C2 C3 O1 178.9 180.0
C3 C2 N1 C2A 181.7 180.0
C5 C6 N1 C2 359.6 359.8
N1 C2 C2A H2A1 236.5 270.0
N1 C2 C2A H2A2 1.7 30.0
N1 C2 C2A H2A3 127.0 150.0
C2 N1 C6 HC6 179.6 180.0
C2A C2 C3 O1 0.6 0.0
C3 C2 C2A N1 178.3 180.0
C2A C2 N1 C6 179.7 179.9
H2A1 C2A C2 H2A2 234.7 240.0
H2A1 C2A C2 H2A3 109.5 120.1
H2A2 C2A C2 H2A3 234.7 240.0
N1 C6 C5 C5A 178.9 180.0
C5 C6 N1 HC6 180.0 179.8
C6 N1 C2 C2A 179.7 179.9
HC6 C6 C5 C5A 358.9 359.8
C5 C6 HC6 N1 180.0 180.2
C5 C5A O2 H5A1 234.7 120.0
C5 C5A O2 H5A2 125.3 240.1
H5A1 C5A O2 H5A2 250.5 120.1
C5A O2 P1 O3 177.4 305.1
C5A O2 P1 O5 56.7 65.0
C5A O2 P1 O4 291.8 185.0
C5 C5A H5A1 O2 135.9 240.0
C5 C5A H5A1 H5A2 247.9 120.0
O2 C5A H5A1 H5A2 112.1 239.9
H5A1 C5A O2 P1 317.1 60.0
C5 C5A H5A2 O2 224.2 119.9
C5 C5A H5A2 H5A1 112.1 240.0
O2 C5A H5A2 H5A1 247.9 120.1
H5A2 C5A O2 P1 66.5 299.9
C N2 C4A H4AC 1.4 360.0
CA2 C N2 CA1 112.8 120.0
CA2 C N2 P2 241.3 240.0
N2 C CA2 CA3 57.5 65.0
N2 C CA2 HA21 292.2 305.0
N2 C CA2 HA22 182.7 185.0
CA1 C N2 P2 128.5 120.0
N2 C CA1 HA11 54.8 180.0
N2 C CA1 HA12 180.0 300.0
N2 C CA1 HA13 305.3 60.0
N2 C P2 O8 79.0 70.0
N2 C P2 O6 197.1 190.0
N2 C P2 O7 319.2 310.0
C2 C2A H2A1 H2A2 132.3 120.0
C2 C2A H2A1 H2A3 246.2 239.9
H2A2 C2A H2A1 H2A3 113.9 119.9
C2 C2A H2A2 H2A1 234.7 240.0
C2 C2A H2A2 H2A3 125.3 120.0
H2A1 C2A H2A2 H2A3 250.5 240.0
C2 C2A H2A3 H2A1 113.8 120.1
C2 C2A H2A3 H2A2 227.7 240.0
H2A1 C2A H2A3 H2A2 113.9 119.9
P1 O2 C5A H5A1 317.1 60.0
P1 O2 C5A H5A2 66.5 299.9
O3 P1 O2 O5 120.7 240.0
O3 P1 O2 O4 245.6 120.0
O5 P1 O2 O4 124.9 240.0
O2 P1 O5 HO5 180.0 60.0
O2 P1 O4 HO4 180.0 180.1
N2 C CA2 CA1 238.3 240.0
N2 C CA2 P2 117.2 120.0
CA1 C CA2 P2 238.9 240.0
CA2 C CA1 HA11 301.1 60.0
CA2 C CA1 HA12 66.3 180.0
CA2 C CA1 HA13 191.6 300.0
CA2 C P2 O8 193.6 190.0
CA2 C P2 O6 311.7 310.0
CA2 C P2 O7 73.8 70.0
CA3 CA2 C HA21 125.3 120.0
CA3 CA2 C HA22 234.7 240.0
C CA2 CA3 HA31 54.7 60.0
C CA2 CA3 HA32 180.0 180.0
C CA2 CA3 HA33 305.3 300.0
HA21 CA2 C HA22 109.5 120.0
N2 C CA1 CA2 113.7 120.0
N2 C CA1 P2 233.5 240.0
CA2 C CA1 P2 119.8 120.0
CA1 C CA2 CA3 179.2 185.0
CA1 C CA2 HA21 53.9 65.0
CA1 C CA2 HA22 304.5 305.0
CA1 C P2 O8 308.8 310.0
CA1 C P2 O6 66.9 70.0
CA1 C P2 O7 188.9 190.0
HA11 CA1 C HA12 234.8 240.0
HA11 CA1 C HA13 109.5 120.0
HA12 CA1 C HA13 234.7 240.0
N2 C P2 CA2 245.4 240.0
N2 C P2 CA1 130.3 120.0
CA2 C P2 CA1 244.9 240.0
P2 C CA2 CA3 300.3 305.0
P2 C CA2 HA21 175.0 185.0
P2 C CA2 HA22 65.6 65.0
P2 C CA1 HA11 181.3 300.0
P2 C CA1 HA12 306.5 60.0
P2 C CA1 HA13 71.8 180.0
O8 P2 C O6 241.9 240.0
O8 P2 C O7 119.9 120.0
C P2 O8 HO8 180.0 60.1
O6 P2 C O7 238.0 240.0
C P2 O6 HO6 180.0 180.0
O2 P1 O3 O5 241.8 120.0
O2 P1 O3 O4 118.3 240.0
O5 P1 O3 O4 236.5 120.0
O3 P1 O5 HO5 61.5 180.0
O3 P1 O4 HO4 296.4 60.0
O2 P1 O5 O3 118.5 240.0
O2 P1 O5 O4 236.8 120.0
O3 P1 O5 O4 118.3 240.0
O5 P1 O4 HO4 58.5 300.0
O2 P1 O4 O3 243.5 120.0
O2 P1 O4 O5 121.4 240.0
O3 P1 O4 O5 237.9 120.0
O4 P1 O5 HO5 303.2 300.0
CA3 CA2 C CA1 179.2 185.0
CA3 CA2 C P2 300.3 305.0
C CA2 CA3 HA21 234.7 240.0
C CA2 CA3 HA22 125.3 120.0
HA21 CA2 CA3 HA22 250.5 240.0
HA31 CA3 CA2 HA32 234.7 240.0
HA31 CA3 CA2 HA33 109.5 120.0
HA32 CA3 CA2 HA33 234.7 240.0
HA21 CA2 C CA1 53.9 65.0
HA21 CA2 C P2 175.0 185.0
C CA2 HA21 CA3 125.7 119.9
C CA2 HA21 HA22 242.8 240.0
CA3 CA2 HA21 HA22 117.2 120.0
HA21 CA2 CA3 HA31 180.0 180.0
HA21 CA2 CA3 HA32 305.3 300.0
HA21 CA2 CA3 HA33 70.5 60.0
HA22 CA2 C CA1 304.5 305.0
HA22 CA2 C P2 65.6 65.0
C CA2 HA22 CA3 234.3 240.0
C CA2 HA22 HA21 117.2 120.0
CA3 CA2 HA22 HA21 242.8 240.0
HA22 CA2 CA3 HA31 289.5 300.0
HA22 CA2 CA3 HA32 54.7 60.0
HA22 CA2 CA3 HA33 180.0 180.0
HA11 CA1 C P2 181.3 300.0
C CA1 HA11 HA12 128.7 120.0
C CA1 HA11 HA13 244.4 240.0
HA12 CA1 HA11 HA13 115.6 120.0
HA12 CA1 C P2 306.5 60.0
C CA1 HA12 HA11 234.8 240.0
C CA1 HA12 HA13 125.3 120.0
HA11 CA1 HA12 HA13 250.5 240.0
HA13 CA1 C P2 71.8 180.0
C CA1 HA13 HA11 115.6 120.0
C CA1 HA13 HA12 231.3 240.0
HA11 CA1 HA13 HA12 115.6 120.0
C P2 O8 O6 120.3 120.0
C P2 O8 O7 238.6 240.0
O6 P2 O8 O7 118.3 120.0
O8 P2 O6 HO6 298.5 300.0
C P2 O6 O8 241.6 240.0
C P2 O6 O7 123.4 120.0
O8 P2 O6 O7 241.8 240.0
O6 P2 O8 HO8 59.7 300.0
C P2 O7 O8 119.5 120.0
C P2 O7 O6 236.8 240.0
O8 P2 O7 O6 117.4 120.0
O7 P2 O8 HO8 301.4 180.1
O7 P2 O6 HO6 56.6 60.0
HO5 O5 P1 O4 303.2 300.0
HO8 O8 P2 O6 59.7 300.0
HO8 O8 P2 O7 301.4 180.1
HO6 O6 P2 O7 56.6 60.0
HA31 CA3 CA2 HA21 180.0 180.0
HA31 CA3 CA2 HA22 289.5 300.0
CA2 CA3 HA31 HA32 125.7 119.9
CA2 CA3 HA31 HA33 242.8 240.0
HA32 CA3 HA31 HA33 117.2 120.0
HA32 CA3 CA2 HA21 305.3 300.0
HA32 CA3 CA2 HA22 54.7 60.0
CA2 CA3 HA32 HA31 234.7 240.1
CA2 CA3 HA32 HA33 125.3 120.0
HA31 CA3 HA32 HA33 250.5 240.0
HA33 CA3 CA2 HA21 70.5 60.0
HA33 CA3 CA2 HA22 180.0 180.0
CA2 CA3 HA33 HA31 117.2 120.0
CA2 CA3 HA33 HA32 234.3 240.0
HA31 CA3 HA33 HA32 117.1 120.0