PDB Chemical Component MPD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MPD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.530	1.530
C1	H11	1.100	1.090
C1	H12	1.100	1.090
C1	H13	1.100	1.090
C2	O2	1.390	1.430
C2	CM	1.525	1.530
C2	C3	1.510	1.530
O2	HO2	0.950	0.967
CM	HM1	1.100	1.090
CM	HM2	1.100	1.090
CM	HM3	1.101	1.090
C3	C4	1.427	1.530
C3	H31	1.100	1.089
C3	H32	1.100	1.090
C4	O4	1.344	1.429
C4	C5	1.522	1.530
C4	H4	1.100	1.090
O4	HO4	0.950	0.967
C5	H51	1.100	1.091
C5	H52	1.100	1.090
C5	H53	1.100	1.089

Bond Angles for MPD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	H11	109.5	109.5
C2	C1	H12	109.5	109.5
C2	C1	H13	109.4	109.5
C1	C2	O2	108.6	109.4
C1	C2	CM	106.7	109.5
C1	C2	C3	113.4	109.5
H11	C1	H12	109.4	109.4
H11	C1	H13	109.4	109.5
H12	C1	H13	109.5	109.4
O2	C2	CM	111.7	109.5
O2	C2	C3	108.5	109.5
C2	O2	HO2	109.5	114.0
CM	C2	C3	107.9	109.5
C2	CM	HM1	109.5	109.5
C2	CM	HM2	109.5	109.5
C2	CM	HM3	109.5	109.5
C2	C3	C4	121.4	109.4
C2	C3	H31	105.7	109.5
C2	C3	H32	105.7	109.5
HM1	CM	HM2	109.4	109.5
HM1	CM	HM3	109.5	109.4
HM2	CM	HM3	109.5	109.4
C4	C3	H31	105.7	109.5
C4	C3	H32	105.7	109.5
C3	C4	O4	122.3	109.5
C3	C4	C5	119.0	109.5
C3	C4	H4	87.5	109.5
H31	C3	H32	112.9	109.5
O4	C4	C5	112.6	109.4
O4	C4	H4	100.6	109.5
C4	O4	HO4	109.5	114.0
C5	C4	H4	107.4	109.5
C4	C5	H51	109.5	109.4
C4	C5	H52	109.5	109.5
C4	C5	H53	109.4	109.5
H51	C5	H52	109.5	109.4
H51	C5	H53	109.5	109.5
H52	C5	H53	109.5	109.5

Torsion Angles for MPD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H11	C1	C2	H12	240.0	240.0
H11	C1	C2	H13	120.0	120.0
H12	C1	C2	H13	240.0	240.0
O2	C2	C1	CM	120.6	240.0
O2	C2	C1	C3	239.3	120.0
C1	C2	O2	HO2	180.0	180.0
CM	C2	C1	C3	118.7	240.0
C1	C2	CM	HM1	180.0	60.0
C1	C2	CM	HM2	300.0	180.0
C1	C2	CM	HM3	60.0	300.0
C1	C2	C3	C4	202.6	60.0
C1	C2	C3	H31	322.6	180.0
C1	C2	C3	H32	82.6	300.0
C2	C1	H11	H12	120.0	120.0
C2	C1	H11	H13	240.0	239.9
H11	C1	C2	O2	180.0	60.0
H11	C1	C2	CM	59.4	180.0
H11	C1	C2	C3	300.7	300.0
H12	C1	H11	H13	120.0	119.9
C2	C1	H12	H11	240.0	240.0
C2	C1	H12	H13	120.0	120.0
H12	C1	C2	O2	300.0	180.0
H12	C1	C2	CM	179.4	300.0
H12	C1	C2	C3	60.7	60.0
H11	C1	H12	H13	240.0	240.0
C2	C1	H13	H11	120.0	120.1
C2	C1	H13	H12	240.0	240.0
H13	C1	C2	O2	60.0	300.0
H13	C1	C2	CM	299.5	60.0
H13	C1	C2	C3	180.8	180.0
H11	C1	H13	H12	120.0	119.9
O2	C2	C1	H11	180.0	60.0
O2	C2	C1	H12	300.0	180.0
O2	C2	C1	H13	60.0	300.0
C1	C2	O2	CM	242.6	120.0
C1	C2	O2	C3	123.7	240.0
CM	C2	O2	C3	241.2	120.0
O2	C2	CM	HM1	61.5	180.0
O2	C2	CM	HM2	181.5	300.0
O2	C2	CM	HM3	301.5	60.0
O2	C2	C3	C4	323.4	300.0
O2	C2	C3	H31	83.4	60.0
O2	C2	C3	H32	203.4	180.0
CM	C2	C1	H11	59.4	180.0
CM	C2	C1	H12	179.4	300.0
CM	C2	C1	H13	299.5	60.0
C1	C2	CM	O2	118.5	240.1
C1	C2	CM	C3	237.7	120.0
O2	C2	CM	C3	119.2	240.0
CM	C2	O2	HO2	297.4	60.0
CM	C2	C3	C4	84.6	180.0
CM	C2	C3	H31	204.6	300.0
CM	C2	C3	H32	324.6	60.0
HM1	CM	C2	HM2	240.0	240.0
HM1	CM	C2	HM3	120.0	120.0
HM2	CM	C2	HM3	240.0	240.0
C3	C2	C1	H11	300.7	300.0
C3	C2	C1	H12	60.7	60.0
C3	C2	C1	H13	180.8	180.0
C1	C2	C3	O2	239.2	120.0
C1	C2	C3	CM	118.0	240.0
O2	C2	C3	CM	238.8	120.0
C3	C2	O2	HO2	56.2	300.0
C3	C2	CM	HM1	302.3	300.0
C3	C2	CM	HM2	62.3	60.0
C3	C2	CM	HM3	182.2	180.0
C4	C3	C2	H31	240.0	240.0
C4	C3	C2	H32	120.0	120.0
C2	C3	C4	O4	37.4	65.0
C2	C3	C4	C5	187.9	185.0
C2	C3	C4	H4	296.4	305.0
H31	C3	C2	H32	240.0	239.9
HO2	O2	C2	CM	297.4	60.0
HO2	O2	C2	C3	56.2	300.0
HM1	CM	C2	C3	302.3	300.0
C2	CM	HM1	HM2	120.0	120.0
C2	CM	HM1	HM3	240.0	240.0
HM2	CM	HM1	HM3	120.0	119.9
HM2	CM	C2	C3	62.3	60.0
C2	CM	HM2	HM1	240.0	240.0
C2	CM	HM2	HM3	120.0	120.1
HM1	CM	HM2	HM3	240.0	240.1
HM3	CM	C2	C3	182.2	180.0
C2	CM	HM3	HM1	120.0	120.0
C2	CM	HM3	HM2	240.0	240.0
HM1	CM	HM3	HM2	120.0	120.0
C2	C3	C4	H31	120.0	119.9
C2	C3	C4	H32	240.0	240.0
H31	C3	C4	H32	120.0	120.1
O4	C4	C3	C5	209.5	240.0
O4	C4	C3	H4	101.0	120.0
C3	C4	O4	HO4	180.0	60.0
C5	C4	C3	H4	251.5	240.0
C3	C4	C5	H51	180.0	60.0
C3	C4	C5	H52	300.0	180.0
C3	C4	C5	H53	60.0	300.0
C2	C3	H31	C4	230.1	240.1
C2	C3	H31	H32	115.1	120.0
C4	C3	H31	H32	244.9	239.9
H31	C3	C4	O4	277.4	305.1
H31	C3	C4	C5	67.9	65.0
H31	C3	C4	H4	176.4	185.1
C2	C3	H32	C4	129.8	120.0
C2	C3	H32	H31	244.9	240.0
C4	C3	H32	H31	115.1	120.0
H32	C3	C4	O4	157.4	185.0
H32	C3	C4	C5	307.9	305.0
H32	C3	C4	H4	56.4	65.0
O4	C4	C3	H31	277.4	305.1
O4	C4	C3	H32	157.4	185.0
C3	C4	O4	C5	152.2	120.0
C3	C4	O4	H4	266.2	240.0
C5	C4	O4	H4	114.0	120.0
O4	C4	C5	H51	333.2	180.0
O4	C4	C5	H52	93.2	299.9
O4	C4	C5	H53	213.2	60.0
C5	C4	C3	H31	67.9	65.0
C5	C4	C3	H32	307.9	305.0
C3	C4	C5	O4	206.8	240.0
C3	C4	C5	H4	97.0	120.0
O4	C4	C5	H4	250.2	240.0
C5	C4	O4	HO4	27.8	300.0
H51	C5	C4	H52	240.0	240.1
H51	C5	C4	H53	120.0	120.0
H52	C5	C4	H53	240.0	239.9
H4	C4	C3	H31	176.4	185.1
H4	C4	C3	H32	56.4	65.0
C3	C4	H4	O4	122.4	120.0
C3	C4	H4	C5	240.4	240.0
O4	C4	H4	C5	117.9	120.0
H4	C4	O4	HO4	273.8	180.0
H4	C4	C5	H51	83.0	300.0
H4	C4	C5	H52	203.0	59.9
H4	C4	C5	H53	323.0	180.0
HO4	O4	C4	C5	27.8	300.0
HO4	O4	C4	H4	273.8	180.0
H51	C5	C4	H4	83.0	300.0
C4	C5	H51	H52	120.0	120.0
C4	C5	H51	H53	240.0	240.0
H52	C5	H51	H53	120.0	120.0
H52	C5	C4	H4	203.0	59.9
C4	C5	H52	H51	240.0	240.1
C4	C5	H52	H53	120.0	120.0
H51	C5	H52	H53	240.0	240.0
H53	C5	C4	H4	323.0	180.0
C4	C5	H53	H51	120.0	120.0
C4	C5	H53	H52	240.0	240.0
H51	C5	H53	H52	120.0	120.0