Atom Nomenclature for MP7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MP7

Atom Name (V3) Atom Name (V2)
C C
F F
N N
O O
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
F12 F12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
N19 N19
N20 N20
O21 O21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
O31 O31
N32 N32
C33 C33
O34 O34
H1 H1
H2 H2
H3 H3
H5 H5
H5A H5A
H7 H7
H8 H8
H11 H11
H15 H15
H17 H17
H18 H18
HN19 HN19
HN20 HN20
H22 H22
H22A H22A
H23 H23
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
HN32 HN32