PDB Chemical Component MP4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MP4
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C5 |
1.388 |
1.386 |
C4 |
C3 |
1.381 |
1.387 |
C4 |
CH3 |
1.536 |
1.506 |
C5 |
C6 |
1.393 |
1.388 |
C5 |
O10 |
1.381 |
1.359 |
C6 |
C1 |
1.385 |
1.382 |
C6 |
H6 |
1.080 |
1.080 |
N |
CA |
1.496 |
1.469 |
N |
H2 |
1.000 |
1.010 |
N |
H |
1.000 |
1.009 |
C3 |
O3 |
1.355 |
1.359 |
C3 |
C2 |
1.392 |
1.388 |
O3 |
HO3 |
0.950 |
0.967 |
C2 |
C1 |
1.392 |
1.382 |
C2 |
H3 |
1.080 |
1.080 |
C1 |
CA |
1.538 |
1.507 |
CA |
C |
1.544 |
1.507 |
CA |
HA |
1.100 |
1.090 |
C |
O |
1.234 |
1.208 |
C |
OXT |
1.430 |
1.342 |
CH3 |
HH3 |
1.100 |
1.090 |
CH3 |
HH3A |
1.100 |
1.091 |
CH3 |
HH3B |
1.100 |
1.091 |
O10 |
HO10 |
0.950 |
0.967 |
OXT |
HXT |
0.950 |
0.966 |
Bond Angles for MP4
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C4 |
C3 |
119.7 |
119.9 |
C5 |
C4 |
CH3 |
119.8 |
120.1 |
C4 |
C5 |
C6 |
120.6 |
120.0 |
C4 |
C5 |
O10 |
119.2 |
120.0 |
C3 |
C4 |
CH3 |
120.4 |
120.0 |
C4 |
C3 |
O3 |
119.5 |
120.0 |
C4 |
C3 |
C2 |
120.0 |
119.9 |
C4 |
CH3 |
HH3 |
109.5 |
109.5 |
C4 |
CH3 |
HH3A |
109.5 |
109.5 |
C4 |
CH3 |
HH3B |
109.4 |
109.5 |
C6 |
C5 |
O10 |
120.1 |
120.0 |
C5 |
C6 |
C1 |
119.5 |
120.1 |
C5 |
C6 |
H6 |
120.2 |
120.0 |
C5 |
O10 |
HO10 |
109.5 |
113.9 |
C1 |
C6 |
H6 |
120.2 |
119.9 |
C6 |
C1 |
C2 |
119.9 |
120.1 |
C6 |
C1 |
CA |
121.3 |
120.0 |
CA |
N |
H2 |
109.5 |
110.9 |
CA |
N |
H |
109.5 |
111.0 |
N |
CA |
C1 |
111.9 |
109.5 |
N |
CA |
C |
117.3 |
109.5 |
N |
CA |
HA |
105.4 |
109.4 |
H2 |
N |
H |
109.5 |
111.0 |
O3 |
C3 |
C2 |
120.4 |
120.0 |
C3 |
O3 |
HO3 |
109.5 |
113.9 |
C3 |
C2 |
C1 |
120.2 |
120.1 |
C3 |
C2 |
H3 |
119.9 |
120.0 |
C1 |
C2 |
H3 |
119.9 |
119.9 |
C2 |
C1 |
CA |
118.7 |
120.0 |
C1 |
CA |
C |
111.2 |
109.5 |
C1 |
CA |
HA |
104.9 |
109.5 |
C |
CA |
HA |
104.8 |
109.5 |
CA |
C |
O |
118.7 |
120.0 |
CA |
C |
OXT |
120.7 |
120.0 |
O |
C |
OXT |
120.7 |
120.0 |
C |
OXT |
HXT |
109.5 |
117.0 |
HH3 |
CH3 |
HH3A |
109.5 |
109.4 |
HH3 |
CH3 |
HH3B |
109.5 |
109.5 |
HH3A |
CH3 |
HH3B |
109.5 |
109.4 |
Torsion Angles for MP4
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C4 |
C5 |
CH3 |
180.6 |
180.2 |
C5 |
C4 |
C3 |
O3 |
175.4 |
180.0 |
C5 |
C4 |
C3 |
C2 |
359.3 |
0.1 |
C5 |
C4 |
CH3 |
HH3 |
90.3 |
90.0 |
C5 |
C4 |
CH3 |
HH3A |
210.3 |
210.0 |
C5 |
C4 |
CH3 |
HH3B |
330.3 |
330.0 |
C6 |
C5 |
C4 |
O10 |
176.5 |
180.1 |
C4 |
C5 |
C6 |
C1 |
359.0 |
360.0 |
C4 |
C5 |
C6 |
H6 |
179.0 |
180.0 |
C4 |
C5 |
O10 |
HO10 |
180.0 |
90.0 |
C5 |
C4 |
C3 |
CH3 |
179.3 |
179.8 |
C3 |
C4 |
C5 |
C6 |
1.0 |
360.0 |
C3 |
C4 |
C5 |
O10 |
184.5 |
179.9 |
C3 |
C4 |
CH3 |
HH3 |
269.7 |
269.8 |
C3 |
C4 |
CH3 |
HH3A |
29.7 |
29.8 |
C3 |
C4 |
CH3 |
HH3B |
149.7 |
149.7 |
O3 |
C3 |
C4 |
C2 |
176.2 |
179.9 |
C4 |
C3 |
O3 |
HO3 |
180.0 |
90.1 |
C4 |
C3 |
C2 |
C1 |
0.4 |
359.9 |
C4 |
C3 |
C2 |
H3 |
180.5 |
179.9 |
C5 |
C4 |
CH3 |
C3 |
180.7 |
180.2 |
CH3 |
C4 |
C5 |
C6 |
180.4 |
179.8 |
CH3 |
C4 |
C5 |
O10 |
3.9 |
359.7 |
CH3 |
C4 |
C3 |
O3 |
356.1 |
0.2 |
CH3 |
C4 |
C3 |
C2 |
179.9 |
180.3 |
HH3 |
CH3 |
C4 |
HH3A |
240.0 |
240.0 |
HH3 |
CH3 |
C4 |
HH3B |
120.0 |
120.0 |
HH3A |
CH3 |
C4 |
HH3B |
240.0 |
240.0 |
C6 |
C5 |
C4 |
C3 |
1.0 |
360.0 |
C6 |
C5 |
C4 |
CH3 |
180.4 |
179.8 |
C4 |
C5 |
C6 |
O10 |
183.6 |
179.9 |
C6 |
C5 |
O10 |
HO10 |
3.5 |
269.9 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C5 |
C6 |
C1 |
C2 |
0.7 |
360.0 |
C5 |
C6 |
C1 |
CA |
181.3 |
180.0 |
O10 |
C5 |
C4 |
C3 |
184.5 |
179.9 |
O10 |
C5 |
C4 |
CH3 |
3.9 |
359.7 |
C4 |
C5 |
O10 |
C6 |
176.5 |
180.1 |
O10 |
C5 |
C6 |
C1 |
175.4 |
180.1 |
O10 |
C5 |
C6 |
H6 |
355.5 |
0.1 |
C1 |
C6 |
C5 |
O10 |
175.4 |
180.1 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
N |
CA |
C1 |
C6 |
35.9 |
220.0 |
C3 |
C2 |
C1 |
C6 |
359.6 |
0.1 |
C6 |
C1 |
C2 |
H3 |
179.6 |
180.0 |
C2 |
C1 |
C6 |
CA |
179.3 |
179.9 |
C6 |
C1 |
CA |
C |
262.5 |
100.0 |
C6 |
C1 |
CA |
HA |
149.6 |
339.9 |
H6 |
C6 |
C5 |
O10 |
355.5 |
0.1 |
C5 |
C6 |
H6 |
C1 |
180.0 |
180.0 |
H6 |
C6 |
C1 |
C2 |
180.7 |
180.0 |
H6 |
C6 |
C1 |
CA |
1.3 |
0.0 |
C6 |
C1 |
CA |
N |
35.9 |
220.0 |
H2 |
N |
CA |
H |
240.0 |
236.1 |
C2 |
C1 |
CA |
N |
216.5 |
40.1 |
C1 |
CA |
N |
C |
229.7 |
240.0 |
C1 |
CA |
N |
HA |
113.5 |
119.9 |
C |
CA |
N |
HA |
243.8 |
240.0 |
N |
CA |
C |
O |
117.5 |
340.0 |
N |
CA |
C |
OXT |
297.5 |
160.0 |
CA |
N |
H2 |
H |
120.0 |
123.9 |
H2 |
N |
CA |
C1 |
180.0 |
300.0 |
H2 |
N |
CA |
C |
310.3 |
60.0 |
H2 |
N |
CA |
HA |
66.5 |
180.0 |
CA |
N |
H |
H2 |
240.0 |
236.1 |
H |
N |
CA |
C1 |
300.0 |
63.9 |
H |
N |
CA |
C |
70.4 |
183.9 |
H |
N |
CA |
HA |
186.5 |
304.0 |
O3 |
C3 |
C4 |
CH3 |
356.1 |
0.2 |
C4 |
C3 |
O3 |
C2 |
183.8 |
180.1 |
O3 |
C3 |
C2 |
C1 |
184.3 |
180.0 |
O3 |
C3 |
C2 |
H3 |
4.3 |
0.0 |
C2 |
C3 |
C4 |
CH3 |
179.9 |
180.3 |
C4 |
C3 |
C2 |
O3 |
176.1 |
179.9 |
C6 |
C1 |
C2 |
C3 |
359.6 |
0.1 |
C2 |
C3 |
O3 |
HO3 |
356.2 |
270.0 |
C1 |
C2 |
C3 |
H3 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
CA |
179.0 |
180.0 |
HO3 |
O3 |
C3 |
C2 |
356.2 |
270.0 |
C2 |
C1 |
C6 |
H6 |
180.7 |
180.0 |
C6 |
C1 |
C2 |
CA |
180.6 |
180.1 |
N |
CA |
C1 |
C2 |
216.5 |
40.1 |
C3 |
C2 |
C1 |
H3 |
180.0 |
180.0 |
C2 |
C1 |
CA |
C |
83.1 |
280.0 |
C2 |
C1 |
CA |
HA |
330.3 |
160.0 |
C3 |
C2 |
H3 |
C1 |
180.0 |
180.0 |
H3 |
C2 |
C1 |
CA |
358.9 |
360.0 |
CA |
C1 |
C6 |
H6 |
1.3 |
0.0 |
C6 |
C1 |
CA |
C2 |
179.4 |
179.9 |
C1 |
CA |
N |
H2 |
180.0 |
300.0 |
C1 |
CA |
N |
H |
300.0 |
63.9 |
N |
CA |
C1 |
C |
133.4 |
120.1 |
N |
CA |
C1 |
HA |
246.2 |
240.1 |
CA |
C1 |
C2 |
H3 |
358.9 |
360.0 |
C |
CA |
C1 |
HA |
112.8 |
120.0 |
C1 |
CA |
C |
O |
248.1 |
100.0 |
C1 |
CA |
C |
OXT |
68.2 |
280.0 |
C |
CA |
N |
H2 |
310.3 |
60.0 |
C |
CA |
N |
H |
70.4 |
183.9 |
N |
CA |
C |
C1 |
229.3 |
240.0 |
N |
CA |
C |
HA |
116.4 |
120.0 |
C1 |
CA |
C |
HA |
247.1 |
240.0 |
O |
C |
CA |
OXT |
180.0 |
180.0 |
CA |
C |
OXT |
HXT |
180.0 |
180.0 |
HA |
CA |
N |
H2 |
66.5 |
180.0 |
HA |
CA |
N |
H |
186.5 |
304.0 |
N |
CA |
HA |
C1 |
118.3 |
119.9 |
N |
CA |
HA |
C |
235.6 |
240.0 |
C1 |
CA |
HA |
C |
117.3 |
120.0 |
HA |
CA |
C |
O |
1.0 |
220.0 |
HA |
CA |
C |
OXT |
181.1 |
40.0 |
O |
C |
CA |
HA |
1.0 |
220.0 |
CA |
C |
O |
OXT |
180.0 |
180.0 |
O |
C |
OXT |
HXT |
0.0 |
359.9 |
OXT |
C |
CA |
HA |
181.1 |
40.0 |
CA |
C |
OXT |
O |
179.9 |
180.0 |
C4 |
CH3 |
HH3 |
HH3A |
120.0 |
120.0 |
C4 |
CH3 |
HH3 |
HH3B |
240.0 |
240.0 |
HH3A |
CH3 |
HH3 |
HH3B |
120.0 |
119.9 |
C4 |
CH3 |
HH3A |
HH3 |
240.0 |
239.9 |
C4 |
CH3 |
HH3A |
HH3B |
120.0 |
120.0 |
HH3 |
CH3 |
HH3A |
HH3B |
240.0 |
240.0 |
C4 |
CH3 |
HH3B |
HH3 |
120.0 |
120.1 |
C4 |
CH3 |
HH3B |
HH3A |
240.0 |
240.0 |
HH3 |
CH3 |
HH3B |
HH3A |
120.0 |
119.9 |