PDB Chemical Component MNU

Ideal Model

Chemical Description

Name (2R,4S)-1-[(4R)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]-5-[(METHYLAMINO)METHYL]-1,2,3,4-TETRAHYDROPYRIMIDINE-2,4-DIOL-5'-MON OPHOSPHATE
Synonyms C5-(METHYLAMINO)METHYL-URIDINE-5'-MONOPHOSPHATE
Formula C11 H18 N3 O9 P
Formal charge 0
Molecular weight 367.249 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 42
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 43
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-[(methylamino)methyl]uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-3,4-dihydroxy-5-[5-(methylaminomethyl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CNCC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O
SMILES (CACTVS) CNCC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O
Stereo SMILES (OpenEye) CNCC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C11H18N3O9P/c1-12-2-5-3-14(11(18)13-9(5)17)10-8(16)7(15)6(23-10)4-22-24(19,20)21/h3,6-8,10,12,15-16H,2,4H2,1H3,(H,13,17,18)(H2,19,20,21)/t6-,7-,8-,10-/m1/s1
InChIKey descriptor NLAYVTPUNIVXFK-FDDDBJFASA-N

Status Information

Last modified 2020-06-17
Created 2004-11-12
Release status REL
Model PDB code 1XMO
Processing site RCSB