PDB Chemical Component MNU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MNU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP2 1.498 1.617
P OP1 1.493 1.501
P O5' 1.591 1.619
P OP3   1.618
OP2 HOP2 0.950 0.980
O5' C5' 1.441 1.416
C5' C4' 1.502 1.523
C5' H5' 1.115 1.092
C5' H5'' 1.115 1.091
C4' O4' 1.444 1.444
C4' C3' 1.513 1.523
C4' H4' 1.115 1.095
O4' C1' 1.415 1.437
C1' N1 1.473 1.435
C1' C2' 1.529 1.519
C1' H1' 1.115 1.094
N1 C6 1.376 1.390
N1 C2 1.380 1.413
C6 C5 1.333 1.339
C6 H6 1.104 1.086
C2 O2 1.208 1.232
C2 N3 1.369 1.400
N3 C4 1.379 1.386
N3 HN3 1.020 1.017
C4 O4 1.235 1.229
C4 C5 1.431 1.487
C5 C7 1.524 1.495
C7 N8 1.481 1.436
C7 H71 1.115 1.090
C7 H72 1.115 1.091
N8 C9 1.482 1.464
N8 HN8 1.020 1.027
C9 H91 1.115 1.093
C9 H92 1.115 1.094
C9 H93 1.115 1.093
C2' O2' 1.412 1.413
C2' C3' 1.517 1.514
C2' H2' 1.115 1.097
O2' HO2' 0.950 0.973
C3' O3' 1.406 1.427
C3' H3' 1.115 1.093
O3' HO3' 0.950 0.969
OP3 HOP3   0.980

Bond Angles for MNU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 119.8 115.3
OP2 P O5' 106.6 103.8
OP2 P OP3   103.3
P OP2 HOP2 119.7 119.0
OP1 P O5' 108.4 115.0
OP1 P OP3   114.9
O5' P OP3   102.9
P O5' C5' 121.3 118.5
P OP3 HOP3   119.0
O5' C5' C4' 109.3 108.6
O5' C5' H5' 112.2 109.2
O5' C5' H5'' 112.3 109.3
C4' C5' H5' 112.2 110.1
C4' C5' H5'' 112.3 110.1
C5' C4' O4' 109.0 108.2
C5' C4' C3' 112.6 113.3
C5' C4' H4' 106.3 109.3
H5' C5' H5'' 98.2 109.6
O4' C4' C3' 104.9 105.9
O4' C4' H4' 113.8 107.7
C4' O4' C1' 109.9 109.2
C3' C4' H4' 110.3 112.2
C4' C3' C2' 103.3 102.1
C4' C3' O3' 109.6 107.9
C4' C3' H3' 114.6 114.5
O4' C1' N1 108.2 109.0
O4' C1' C2' 107.7 106.5
O4' C1' H1' 113.9 108.9
N1 C1' C2' 115.8 112.5
N1 C1' H1' 105.5 107.3
C1' N1 C6 120.9 118.5
C1' N1 C2 118.5 121.3
C2' C1' H1' 106.0 112.6
C1' C2' O2' 109.5 112.6
C1' C2' C3' 101.5 102.0
C1' C2' H2' 115.3 111.1
C6 N1 C2 120.6 120.2
N1 C6 C5 123.0 124.5
N1 C6 H6 120.2 114.7
N1 C2 O2 122.9 123.8
N1 C2 N3 115.2 115.1
C5 C6 H6 116.8 120.7
C6 C5 C4 119.7 118.4
C6 C5 C7 119.7 123.6
O2 C2 N3 121.9 121.1
C2 N3 C4 127.1 127.0
C2 N3 HN3 116.0 116.4
C4 N3 HN3 116.9 116.6
N3 C4 O4 119.4 123.6
N3 C4 C5 114.5 114.8
O4 C4 C5 126.1 121.6
C4 C5 C7 120.6 118.0
C5 C7 N8 110.2 107.5
C5 C7 H71 111.9 108.8
C5 C7 H72 112.0 108.8
N8 C7 H71 111.9 110.8
N8 C7 H72 111.9 110.7
C7 N8 C9 114.0 111.7
C7 N8 HN8 110.6 110.3
H71 C7 H72 98.5 110.1
C9 N8 HN8 110.5 108.2
N8 C9 H91 110.5 110.1
N8 C9 H92 114.0 110.2
N8 C9 H93 110.6 110.2
H91 C9 H92 110.6 108.7
H91 C9 H93 99.8 108.8
H92 C9 H93 110.6 108.7
O2' C2' C3' 111.8 112.3
O2' C2' H2' 105.7 108.6
C2' O2' HO2' 109.5 107.2
C3' C2' H2' 113.1 110.1
C2' C3' O3' 112.9 110.3
C2' C3' H3' 111.4 114.0
O3' C3' H3' 105.3 107.8
C3' O3' HO3' 109.6 106.4

Torsion Angles for MNU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 O5' 123.3 233.4
OP1 P OP2 OP3   126.2
O5' P OP2 OP3   252.9
OP2 P O5' C5' 61.9 53.2
OP2 P OP3 HOP3   78.5
OP2 P OP1 O5' 237.5 120.7
OP2 P OP1 OP3   240.0
OP1 P OP2 HOP2 180.0 48.7
O5' P OP1 OP3   119.3
OP1 P O5' C5' 291.7 180.1
OP1 P OP3 HOP3   312.0
OP2 P O5' OP1 130.2 233.1
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 56.7 175.4
OP1 P O5' OP3   234.2
O5' P OP3 HOP3   186.2
P O5' C5' C4' 163.7 180.0
P O5' C5' H5' 38.4 300.1
P O5' C5' H5'' 289.0 59.9
OP2 P OP3 OP1   126.5
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP1 P OP3 O5'   125.8
OP3 P O5' C5'   305.8
HOP2 OP2 P OP1 180.0 48.7
HOP2 OP2 P O5' 56.7 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 125.2 239.9
C4' C5' O5' H5'' 234.7 120.1
O5' C5' C4' O4' 292.6 62.4
O5' C5' C4' C3' 48.6 179.5
O5' C5' C4' H4' 169.5 305.4
H5' C5' O5' H5'' 109.5 240.2
O5' C5' C4' H5' 234.8 119.5
O5' C5' C4' H5'' 125.3 240.4
H5' C5' C4' H5'' 250.5 120.9
O4' C4' C5' C3' 244.0 242.9
O4' C4' C5' H4' 123.1 117.0
C5' C4' O4' C1' 138.8 109.0
C3' C4' C5' H4' 239.1 234.1
C5' C4' C3' C2' 208.7 273.1
C5' C4' C3' O3' 88.1 156.8
C5' C4' C3' H3' 330.0 36.8
O5' C5' H5' C4' 123.6 240.8
O5' C5' H5' H5'' 241.8 119.6
C4' C5' H5' H5'' 118.2 238.8
H5' C5' C4' O4' 57.8 302.9
H5' C5' C4' C3' 173.8 60.0
H5' C5' C4' H4' 294.7 185.9
O5' C5' H5'' C4' 236.3 119.2
O5' C5' H5'' H5' 118.2 240.4
C4' C5' H5'' H5' 241.8 121.2
H5'' C5' C4' O4' 167.3 182.0
H5'' C5' C4' C3' 283.3 299.1
H5'' C5' C4' H4' 44.2 65.0
O4' C4' C5' H5' 57.8 302.9
O4' C4' C5' H5'' 167.3 182.0
C5' C4' O4' C3' 120.8 121.7
C5' C4' O4' H4' 241.5 241.9
C3' C4' O4' H4' 120.7 120.2
O4' C4' C3' C2' 327.1 31.5
O4' C4' C3' O3' 206.5 275.3
O4' C4' C3' H3' 88.4 155.2
C4' O4' C1' N1 238.5 227.1
C4' O4' C1' C2' 4.3 348.7
C4' O4' C1' H1' 121.6 110.3
C3' C4' C5' H5' 173.8 60.0
C3' C4' C5' H5'' 283.3 299.1
C5' C4' C3' O4' 241.5 241.6
C5' C4' C3' H4' 118.6 124.4
O4' C4' C3' H4' 237.0 242.8
C3' C4' O4' C1' 17.9 347.2
C1' C2' C3' C4' 34.2 322.9
O2' C2' C3' C4' 277.6 202.0
C4' C3' C2' H2' 158.4 80.9
C2' C3' C4' O3' 120.6 116.3
C2' C3' C4' H3' 238.7 236.3
O3' C3' C4' H3' 118.1 120.1
C4' C3' O3' HO3' 180.0 312.6
H4' C4' C5' H5' 294.7 185.9
H4' C4' C5' H5'' 44.2 65.0
C5' C4' H4' O4' 120.0 117.3
C5' C4' H4' C3' 237.7 233.5
O4' C4' H4' C3' 117.6 116.2
H4' C4' O4' C1' 257.2 227.0
H4' C4' C3' C2' 90.1 148.7
H4' C4' C3' O3' 329.5 32.5
H4' C4' C3' H3' 211.4 272.4
C1' O4' C4' C3' 17.9 347.2
C1' O4' C4' H4' 257.2 227.0
N1 C1' O4' C2' 234.2 238.4
N1 C1' O4' H1' 116.9 116.8
O4' C1' N1 C6 355.7 32.3
O4' C1' N1 C2 176.1 212.2
C2' C1' O4' H1' 242.7 238.4
O4' C1' C2' O2' 93.9 151.3
O4' C1' C2' C3' 335.6 30.7
O4' C1' C2' H2' 212.9 273.4
O4' C1' N1 C2' 120.9 117.9
O4' C1' N1 H1' 237.7 242.3
C2' C1' N1 H1' 116.8 124.4
N1 C1' C2' O2' 215.1 270.6
N1 C1' C2' C3' 96.8 150.0
N1 C1' C2' H2' 334.1 32.7
C6 N1 C1' C2 179.6 180.1
C1' N1 C6 C5 180.5 180.0
C1' N1 C6 H6 0.5 360.0
C1' N1 C2 O2 359.0 0.1
C1' N1 C2 N3 179.4 180.0
C4' C3' C2' C1' 34.2 322.9
O4' C1' C2' N1 238.8 240.7
O4' C1' C2' H1' 122.3 119.3
N1 C1' C2' H1' 243.5 238.6
C2' C1' N1 C6 234.8 274.4
C2' C1' N1 C2 55.1 94.3
O2' C2' C1' C3' 118.3 120.6
O2' C2' C1' H2' 241.0 237.9
C1' C2' O2' HO2' 180.0 324.7
C3' C2' C1' H2' 122.7 117.3
C1' C2' C3' O3' 152.5 77.4
C1' C2' C3' H3' 270.8 198.9
O4' C1' H1' N1 118.5 117.8
O4' C1' H1' C2' 241.8 242.1
N1 C1' H1' C2' 123.3 124.3
H1' C1' N1 C6 118.0 150.0
H1' C1' N1 C2 298.3 329.9
H1' C1' C2' O2' 331.6 32.1
H1' C1' C2' C3' 213.3 271.5
H1' C1' C2' H2' 90.6 154.2
C6 N1 C1' C2' 234.8 274.4
C6 N1 C1' H1' 118.0 150.0
C1' N1 C6 C2 180.4 179.9
C6 N1 C2 O2 179.3 180.0
C6 N1 C2 N3 359.7 360.0
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 C4 0.1 0.0
N1 C6 C5 C7 180.0 180.0
C2 N1 C1' C2' 55.1 94.3
C2 N1 C1' H1' 298.3 329.9
C1' N1 C2 C6 179.6 180.1
C2 N1 C6 C5 0.1 0.0
C2 N1 C6 H6 180.1 180.0
O2 C2 N1 N3 179.6 180.1
N1 C2 N3 C4 0.3 360.0
N1 C2 N3 HN3 180.3 180.1
C5 C6 N1 C2 0.1 0.0
N1 C6 C5 H6 180.0 180.0
N3 C4 C5 C6 359.9 360.0
O4 C4 C5 C6 180.1 180.0
C4 C5 C6 C7 180.1 180.0
C6 C5 C7 N8 63.8 90.0
C6 C5 C7 H71 298.5 330.0
C6 C5 C7 H72 189.0 210.0
H6 C6 N1 C2 180.1 180.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 180.1 180.0
H6 C6 C5 C7 360.0 360.0
N1 C2 O2 N3 180.4 179.9
O2 C2 N3 C4 180.7 179.9
O2 C2 N3 HN3 0.7 0.0
N1 C2 N3 O2 179.6 180.1
C4 N3 C2 HN3 180.0 179.9
C2 N3 C4 O4 179.7 180.1
C2 N3 C4 C5 359.9 0.1
C6 C5 C4 N3 359.9 360.0
C2 N3 C4 HN3 180.0 180.1
O4 C4 N3 C5 179.9 180.0
N3 C4 C5 C7 180.0 180.0
C2 N3 HN3 C4 180.0 179.9
HN3 N3 C4 O4 359.7 360.0
HN3 N3 C4 C5 179.9 180.0
C6 C5 C4 O4 180.1 180.0
O4 C4 N3 HN3 359.7 360.0
N3 C4 O4 C5 180.2 180.0
O4 C4 C5 C7 0.2 360.0
C4 C5 C6 H6 180.1 180.0
C6 C5 C4 C7 179.9 180.0
C5 C4 N3 HN3 179.9 180.0
N3 C4 C5 O4 179.9 180.0
C4 C5 C7 N8 243.7 270.0
C4 C5 C7 H71 118.4 150.0
C4 C5 C7 H72 8.9 30.0
C7 C5 C6 H6 360.0 360.0
C6 C5 C7 C4 180.1 180.0
N8 C7 C5 H71 125.2 120.1
N8 C7 C5 H72 234.7 240.0
C5 C7 N8 C9 179.9 179.6
C5 C7 N8 HN8 54.7 300.0
H71 C7 C5 H72 109.5 120.0
C5 C7 N8 H71 234.8 241.2
C5 C7 N8 H72 125.3 118.8
H71 C7 N8 H72 250.5 237.6
C9 N8 C7 HN8 125.2 239.6
C7 N8 C9 H91 54.8 163.1
C7 N8 C9 H92 180.0 43.1
C7 N8 C9 H93 305.3 283.1
C5 C7 H71 N8 124.3 118.0
C5 C7 H71 H72 242.1 240.8
N8 C7 H71 H72 117.8 122.8
H71 C7 N8 C9 305.1 298.4
H71 C7 N8 HN8 179.9 58.8
C5 C7 H72 N8 235.7 242.0
C5 C7 H72 H71 117.8 119.2
N8 C7 H72 H71 242.2 237.2
H72 C7 N8 C9 54.6 60.8
H72 C7 N8 HN8 289.4 181.2
C9 N8 C7 H71 305.1 298.4
C9 N8 C7 H72 54.6 60.8
C7 N8 C9 HN8 234.8 121.6
H91 C9 N8 H92 234.8 120.0
H91 C9 N8 H93 109.5 240.0
H92 C9 N8 H93 234.7 120.0
HN8 N8 C7 H71 179.9 58.8
HN8 N8 C7 H72 289.4 181.2
C7 N8 HN8 C9 127.1 237.5
HN8 N8 C9 H91 180.0 41.4
HN8 N8 C9 H92 305.2 281.4
HN8 N8 C9 H93 70.5 161.5
H91 C9 N8 HN8 180.0 41.4
N8 C9 H91 H92 127.1 239.1
N8 C9 H91 H93 243.6 120.9
H92 C9 H91 H93 116.4 241.8
H92 C9 N8 HN8 305.2 281.4
N8 C9 H92 H91 234.8 120.8
N8 C9 H92 H93 125.3 239.1
H91 C9 H92 H93 250.5 118.3
H93 C9 N8 HN8 70.5 161.5
N8 C9 H93 H91 116.4 239.2
N8 C9 H93 H92 232.8 120.9
H91 C9 H93 H92 116.4 241.8
C4' C3' C2' O2' 277.6 202.0
O2' C2' C1' H1' 331.6 32.1
C1' C2' O2' C3' 248.3 245.5
C1' C2' O2' H2' 124.8 123.5
C3' C2' O2' H2' 236.5 238.0
O2' C2' C3' O3' 35.9 316.5
O2' C2' C3' H3' 154.1 78.0
C2' C3' C4' H4' 90.1 148.7
C4' C3' C2' O3' 241.7 245.5
C4' C3' C2' H3' 123.5 124.0
C3' C2' C1' H1' 213.3 271.5
C1' C2' C3' O2' 116.6 120.8
C1' C2' C3' H2' 235.8 242.0
O2' C2' C3' H2' 119.2 121.1
C3' C2' O2' HO2' 291.7 79.2
O3' C3' C2' H3' 241.8 238.5
C2' C3' O3' HO3' 65.5 201.9
H2' C2' C1' H1' 90.6 154.2
C1' C2' H2' O2' 238.9 235.6
C1' C2' H2' C3' 116.3 112.3
O2' C2' H2' C3' 237.3 236.7
H2' C2' O2' HO2' 55.2 201.2
H2' C2' C3' O3' 276.7 195.4
H2' C2' C3' H3' 34.9 316.9
HO2' O2' C2' C3' 291.7 79.2
HO2' O2' C2' H2' 55.2 201.2
O3' C3' C4' H4' 329.5 32.5
C4' C3' O3' C2' 114.6 110.7
C4' C3' O3' H3' 236.3 235.8
O3' C3' C2' H2' 276.7 195.4
C2' C3' O3' H3' 121.7 125.1
H3' C3' C4' H4' 211.4 272.4
C4' C3' H3' C2' 243.2 243.0
C4' C3' H3' O3' 120.5 120.1
H3' C3' C2' H2' 34.9 316.9
C2' C3' H3' O3' 237.2 237.2
H3' C3' O3' HO3' 303.7 76.8
HO3' O3' C3' H3' 303.7 76.8