PDB Chemical Component MND
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MND
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.450 |
1.469 |
| CA |
CB |
1.551 |
1.530 |
| CA |
C |
1.524 |
1.507 |
| CB |
CG |
1.540 |
1.507 |
| CG |
OD1 |
1.230 |
1.213 |
| CG |
ND2 |
1.340 |
1.348 |
| ND2 |
CE2 |
1.457 |
1.465 |
| C |
O |
1.230 |
1.209 |
| C |
OXT |
1.340 |
1.342 |
| N |
H |
1.000 |
1.008 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.101 |
1.090 |
| ND2 |
HD2 |
1.000 |
0.970 |
| CE2 |
HE21 |
1.100 |
1.090 |
| CE2 |
HE22 |
1.100 |
1.091 |
| CE2 |
HE23 |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for MND
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
112.1 |
109.4 |
| N |
CA |
C |
109.3 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
108.7 |
109.5 |
| CB |
CA |
C |
112.1 |
109.5 |
| CA |
CB |
CG |
119.7 |
109.5 |
| CB |
CA |
HA |
105.7 |
109.5 |
| CA |
CB |
HB2 |
106.2 |
109.5 |
| CA |
CB |
HB3 |
106.2 |
109.5 |
| CA |
C |
O |
119.4 |
119.9 |
| CA |
C |
OXT |
118.4 |
120.0 |
| C |
CA |
HA |
108.7 |
109.5 |
| CB |
CG |
OD1 |
123.6 |
120.0 |
| CB |
CG |
ND2 |
116.6 |
120.0 |
| CG |
CB |
HB2 |
106.2 |
109.5 |
| CG |
CB |
HB3 |
106.2 |
109.5 |
| OD1 |
CG |
ND2 |
117.8 |
120.0 |
| CG |
ND2 |
CE2 |
124.5 |
120.0 |
| CG |
ND2 |
HD2 |
117.8 |
120.0 |
| CE2 |
ND2 |
HD2 |
117.8 |
120.0 |
| ND2 |
CE2 |
HE21 |
109.5 |
109.5 |
| ND2 |
CE2 |
HE22 |
109.5 |
109.4 |
| ND2 |
CE2 |
HE23 |
109.5 |
109.5 |
| O |
C |
OXT |
122.0 |
120.1 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.4 |
111.0 |
| HB2 |
CB |
HB3 |
112.5 |
109.4 |
| HE21 |
CE2 |
HE22 |
109.5 |
109.4 |
| HE21 |
CE2 |
HE23 |
109.4 |
109.5 |
| HE22 |
CE2 |
HE23 |
109.5 |
109.5 |
Torsion Angles for MND
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C |
125.0 |
120.0 |
| N |
CA |
CB |
CG |
338.4 |
65.0 |
| CB |
CA |
N |
HA |
243.5 |
240.0 |
| N |
CA |
CB |
HB2 |
98.4 |
185.0 |
| N |
CA |
CB |
HB3 |
218.4 |
305.0 |
| N |
CA |
C |
O |
61.7 |
20.0 |
| N |
CA |
C |
OXT |
246.6 |
200.0 |
| C |
CA |
N |
HA |
118.5 |
120.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| N |
CA |
CB |
C |
236.6 |
240.0 |
| CB |
CA |
N |
H |
180.0 |
60.1 |
| CB |
CA |
N |
H2 |
300.0 |
184.0 |
| N |
CA |
CB |
HA |
118.3 |
120.0 |
| CB |
CA |
C |
O |
296.7 |
260.0 |
| CB |
CA |
C |
OXT |
121.7 |
80.0 |
| C |
CA |
CB |
HA |
241.7 |
240.0 |
| CA |
CB |
CG |
OD1 |
353.7 |
0.0 |
| CA |
CB |
CG |
ND2 |
156.9 |
180.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.0 |
120.0 |
| HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
| N |
CA |
C |
CB |
125.0 |
120.0 |
| C |
CA |
N |
H |
55.1 |
300.1 |
| C |
CA |
N |
H2 |
175.1 |
64.0 |
| N |
CA |
C |
HA |
241.5 |
240.0 |
| C |
CA |
CB |
CG |
101.9 |
185.0 |
| CB |
CA |
C |
HA |
116.5 |
120.0 |
| C |
CA |
CB |
HB2 |
221.9 |
305.0 |
| C |
CA |
CB |
HB3 |
341.9 |
65.0 |
| O |
C |
CA |
OXT |
175.0 |
180.0 |
| CA |
C |
OXT |
HXT |
174.9 |
180.0 |
| CG |
CB |
CA |
C |
101.9 |
185.0 |
| CG |
CB |
CA |
HA |
220.2 |
305.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
240.0 |
240.0 |
| OD1 |
CG |
CB |
ND2 |
196.9 |
180.1 |
| CB |
CG |
ND2 |
CE2 |
167.2 |
180.0 |
| CB |
CG |
ND2 |
HD2 |
347.2 |
0.1 |
| HB2 |
CB |
CG |
HB3 |
120.0 |
120.0 |
| CB |
CG |
OD1 |
ND2 |
163.0 |
179.9 |
| OD1 |
CG |
CB |
HB2 |
233.7 |
240.0 |
| OD1 |
CG |
CB |
HB3 |
113.7 |
120.0 |
| OD1 |
CG |
ND2 |
CE2 |
331.4 |
359.9 |
| OD1 |
CG |
ND2 |
HD2 |
151.4 |
180.0 |
| CB |
CG |
ND2 |
OD1 |
195.8 |
180.1 |
| ND2 |
CG |
CB |
HB2 |
36.9 |
60.0 |
| ND2 |
CG |
CB |
HB3 |
276.9 |
300.0 |
| CE2 |
ND2 |
CG |
HD2 |
180.0 |
179.9 |
| CG |
ND2 |
CE2 |
HE21 |
180.0 |
300.1 |
| CG |
ND2 |
CE2 |
HE22 |
300.0 |
60.0 |
| CG |
ND2 |
CE2 |
HE23 |
60.0 |
180.0 |
| CG |
ND2 |
CE2 |
HD2 |
180.0 |
180.1 |
| HE21 |
CE2 |
ND2 |
HE22 |
240.0 |
240.1 |
| HE21 |
CE2 |
ND2 |
HE23 |
120.0 |
120.1 |
| HE22 |
CE2 |
ND2 |
HE23 |
240.0 |
240.0 |
| CA |
C |
O |
OXT |
185.2 |
180.0 |
| O |
C |
CA |
HA |
180.1 |
140.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.0 |
| CA |
C |
OXT |
O |
174.9 |
180.0 |
| OXT |
C |
CA |
HA |
5.1 |
320.0 |
| H |
N |
CA |
CB |
180.0 |
60.1 |
| H |
N |
CA |
C |
55.1 |
300.1 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
HA |
296.5 |
180.0 |
| H2 |
N |
CA |
CB |
300.0 |
184.0 |
| H2 |
N |
CA |
C |
175.1 |
64.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
56.5 |
303.9 |
| N |
CA |
HA |
CB |
239.5 |
240.0 |
| N |
CA |
HA |
C |
118.9 |
120.0 |
| HA |
CA |
N |
H |
296.5 |
180.0 |
| HA |
CA |
N |
H2 |
56.5 |
303.9 |
| CB |
CA |
HA |
C |
239.5 |
240.0 |
| HA |
CA |
CB |
CG |
220.2 |
305.0 |
| HA |
CA |
CB |
HB2 |
340.2 |
65.0 |
| HA |
CA |
CB |
HB3 |
100.2 |
185.0 |
| HA |
CA |
C |
O |
180.1 |
140.0 |
| HA |
CA |
C |
OXT |
5.1 |
320.0 |
| HB2 |
CB |
CA |
C |
221.9 |
305.0 |
| CA |
CB |
HB2 |
CG |
231.6 |
240.0 |
| HB2 |
CB |
CA |
HA |
340.2 |
65.0 |
| CA |
CB |
HB2 |
HB3 |
115.8 |
120.0 |
| HB2 |
CB |
CG |
OD1 |
233.7 |
240.0 |
| HB2 |
CB |
CG |
ND2 |
36.9 |
60.0 |
| CG |
CB |
HB2 |
HB3 |
244.2 |
240.0 |
| HB3 |
CB |
CA |
C |
341.9 |
65.0 |
| CA |
CB |
HB3 |
CG |
128.4 |
120.0 |
| HB3 |
CB |
CA |
HA |
100.2 |
185.0 |
| CA |
CB |
HB3 |
HB2 |
244.2 |
240.0 |
| HB3 |
CB |
CG |
OD1 |
113.7 |
120.0 |
| HB3 |
CB |
CG |
ND2 |
276.9 |
300.0 |
| CG |
CB |
HB3 |
HB2 |
115.8 |
120.0 |
| CG |
ND2 |
HD2 |
CE2 |
180.0 |
179.9 |
| HD2 |
ND2 |
CE2 |
HE21 |
360.0 |
120.0 |
| HD2 |
ND2 |
CE2 |
HE22 |
120.0 |
239.9 |
| HD2 |
ND2 |
CE2 |
HE23 |
240.0 |
359.9 |
| HE21 |
CE2 |
ND2 |
HD2 |
360.0 |
120.0 |
| ND2 |
CE2 |
HE21 |
HE22 |
120.0 |
120.0 |
| ND2 |
CE2 |
HE21 |
HE23 |
240.0 |
240.0 |
| HE22 |
CE2 |
HE21 |
HE23 |
120.0 |
120.0 |
| HE22 |
CE2 |
ND2 |
HD2 |
120.0 |
239.9 |
| ND2 |
CE2 |
HE22 |
HE21 |
240.0 |
240.0 |
| ND2 |
CE2 |
HE22 |
HE23 |
120.0 |
120.0 |
| HE21 |
CE2 |
HE22 |
HE23 |
240.0 |
240.0 |
| HE23 |
CE2 |
ND2 |
HD2 |
240.0 |
359.9 |
| ND2 |
CE2 |
HE23 |
HE21 |
120.0 |
120.1 |
| ND2 |
CE2 |
HE23 |
HE22 |
240.0 |
240.0 |
| HE21 |
CE2 |
HE23 |
HE22 |
120.0 |
120.0 |