PDB Chemical Component MNA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MNA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.548	1.506
C1	O1A	1.234	1.208
C1	O1B	1.225	1.342
C2	C3	1.552	1.530
C2	O2	1.414	1.429
C2	O6	1.420	1.426
C3	C4	1.515	1.532
C3	H32	1.082	1.091
C3	H31	1.099	1.089
C4	C5	1.526	1.531
C4	O4	1.426	1.429
C4	H4	1.093	1.090
C5	C6	1.531	1.530
C5	N5	1.467	1.465
C5	H5	1.116	1.090
C6	C7	1.520	1.530
C6	O6	1.429	1.425
C6	H6	1.099	1.089
C7	C8	1.550	1.531
C7	O7	1.395	1.429
C7	H7	1.111	1.090
C8	C9	1.507	1.530
C8	O8	1.404	1.428
C8	H8	1.093	1.089
C9	O9	1.393	1.429
C9	H92	1.108	1.090
C9	H91	1.108	1.090
C10	C11	1.518	1.507
C10	N5	1.326	1.347
C10	O10	1.224	1.212
C11	H111	1.082	1.089
C11	H113	1.094	1.091
C11	H112	1.107	1.090
C12	O2	1.435	1.429
C12	H121	1.114	1.090
C12	H122	1.115	1.090
C12	H123	1.115	1.089
N5	HN5	0.972	0.970
O1B	HO1B	0.950	0.967
O4	HO4	0.947	0.966
O7	HO7	0.954	0.967
O8	HO8	0.971	0.966
O9	HO9	0.954	0.967

Bond Angles for MNA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1A	119.9	120.0
C2	C1	O1B	120.4	120.0
C1	C2	C3	112.4	109.4
C1	C2	O2	106.2	109.4
C1	C2	O6	113.6	109.4
O1A	C1	O1B	119.7	120.0
C1	O1B	HO1B	120.4	120.0
C3	C2	O2	110.1	109.4
C3	C2	O6	106.5	109.8
C2	C3	C4	112.8	109.0
C2	C3	H32	108.9	109.5
C2	C3	H31	110.1	109.6
O2	C2	O6	108.0	109.5
C2	O2	C12	116.2	106.8
C2	O6	C6	118.3	107.6
C4	C3	H32	109.9	109.5
C4	C3	H31	109.1	109.6
C3	C4	C5	109.4	108.7
C3	C4	O4	113.2	109.6
C3	C4	H4	107.6	109.5
H32	C3	H31	105.8	109.7
C5	C4	O4	109.5	109.8
C5	C4	H4	109.5	109.6
C4	C5	C6	108.1	109.0
C4	C5	N5	106.9	109.6
C4	C5	H5	107.7	109.6
O4	C4	H4	107.6	109.5
C4	O4	HO4	108.3	106.9
C6	C5	N5	111.8	109.6
C6	C5	H5	111.3	109.5
C5	C6	C7	116.1	109.5
C5	C6	O6	111.2	109.8
C5	C6	H6	108.9	109.4
N5	C5	H5	110.9	109.5
C5	N5	C10	122.6	120.0
C5	N5	HN5	117.1	120.0
C7	C6	O6	104.7	109.4
C7	C6	H6	106.8	109.4
C6	C7	C8	112.0	109.5
C6	C7	O7	105.5	109.5
C6	C7	H7	109.8	109.5
O6	C6	H6	108.8	109.4
C8	C7	O7	108.8	109.4
C8	C7	H7	111.0	109.5
C7	C8	C9	110.3	109.4
C7	C8	O8	112.0	109.4
C7	C8	H8	109.0	109.5
O7	C7	H7	109.6	109.5
C7	O7	HO7	104.1	106.8
C9	C8	O8	108.2	109.4
C9	C8	H8	110.0	109.5
C8	C9	O9	107.3	109.5
C8	C9	H92	109.9	109.4
C8	C9	H91	109.2	109.5
O8	C8	H8	107.3	109.5
C8	O8	HO8	108.2	106.9
O9	C9	H92	108.3	109.4
O9	C9	H91	112.3	109.5
C9	O9	HO9	105.0	106.8
H92	C9	H91	109.8	109.5
C11	C10	N5	119.6	120.0
C11	C10	O10	121.1	120.0
C10	C11	H111	110.5	109.5
C10	C11	H113	109.9	109.5
C10	C11	H112	110.8	109.5
N5	C10	O10	119.2	120.0
C10	N5	HN5	120.4	120.0
H111	C11	H113	108.2	109.5
H111	C11	H112	108.2	109.5
H113	C11	H112	109.3	109.5
O2	C12	H121	116.2	109.5
O2	C12	H122	109.8	109.5
O2	C12	H123	109.8	109.5
H121	C12	H122	109.8	109.4
H121	C12	H123	109.8	109.4
H122	C12	H123	100.4	109.5

Torsion Angles for MNA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1A	C1	C2	O1B	180.2	180.1
C2	C1	O1B	HO1B	179.9	180.0
C3	C2	C1	O2	120.5	119.8
C3	C2	C1	O6	239.0	239.7
C1	C2	C3	C4	71.0	58.9
C1	C2	C3	H32	308.7	178.7
C1	C2	C3	H31	193.1	299.0
O2	C2	C1	O6	118.5	119.9
C1	C2	O2	C12	299.8	297.2
C1	C2	O6	C6	291.0	307.5
C2	C1	O1A	O1B	179.8	179.9
O1A	C1	C2	C3	52.6	216.5
O1A	C1	C2	O2	292.1	96.8
O1A	C1	C2	O6	173.6	336.9
O1A	C1	O1B	HO1B	359.7	359.9
C2	C1	O1B	O1A	180.2	180.1
O1B	C1	C2	C3	232.4	36.5
O1B	C1	C2	O2	111.9	276.7
O1B	C1	C2	O6	353.4	156.8
C3	C2	C1	O1A	52.6	216.5
C3	C2	C1	O1B	232.4	36.5
C1	C2	C3	O2	241.8	240.2
C1	C2	C3	O6	125.0	120.1
O2	C2	C3	O6	243.2	239.8
C3	C2	O2	C12	177.8	177.4
C3	C2	O6	C6	55.3	67.6
C4	C3	C2	H32	122.3	240.2
C4	C3	C2	H31	237.9	119.9
C2	C3	C4	C5	57.7	53.7
C2	C3	C4	O4	180.1	173.7
C2	C3	C4	H4	298.8	293.9
H32	C3	C2	H31	115.6	239.7
O2	C2	C1	O1A	292.1	96.8
O2	C2	C1	O1B	111.9	276.7
C1	C2	O2	C3	122.0	119.8
C1	C2	O2	O6	237.9	240.2
C3	C2	O2	O6	115.9	120.4
O2	C2	C3	C4	189.3	178.7
O2	C2	C3	H32	66.9	298.4
O2	C2	C3	H31	311.4	58.7
O2	C2	O6	C6	173.5	187.7
C2	O2	C12	H121	180.0	185.6
C2	O2	C12	H122	305.3	305.6
C2	O2	C12	H123	54.7	65.6
O6	C2	C1	O1A	173.6	336.9
O6	C2	C1	O1B	353.4	156.8
C1	C2	O6	C3	235.7	239.9
C1	C2	O6	O2	117.5	119.8
C3	C2	O6	O2	241.7	239.9
O6	C2	C3	C4	306.1	298.8
O6	C2	C3	H32	183.8	58.6
O6	C2	C3	H31	68.2	178.9
O6	C2	O2	C12	61.9	57.0
C5	C6	O6	C2	301.4	292.4
C7	C6	O6	C2	175.3	172.3
C2	O6	C6	H6	61.4	52.5
C4	C3	C2	O2	189.3	178.7
C4	C3	C2	O6	306.1	298.8
C2	C3	C4	H32	238.3	119.7
C2	C3	C4	H31	122.6	240.1
H32	C3	C4	H31	244.4	120.3
C5	C4	C3	O4	237.6	240.0
C5	C4	C3	H4	118.9	119.8
C3	C4	C5	C6	304.1	306.3
C3	C4	C5	N5	183.6	186.3
C3	C4	C5	H5	64.4	66.2
O4	C4	C3	H4	241.3	239.8
C3	C4	O4	HO4	76.0	59.9
H32	C3	C2	O2	66.9	298.4
H32	C3	C2	O6	183.8	58.6
C2	C3	H32	C4	124.0	240.6
C2	C3	H32	H31	241.7	120.3
C4	C3	H32	H31	117.7	239.7
H32	C3	C4	C5	179.4	293.9
H32	C3	C4	O4	301.8	53.9
H32	C3	C4	H4	60.6	174.1
H31	C3	C2	O2	311.4	58.7
H31	C3	C2	O6	68.2	178.9
C2	C3	H31	C4	235.8	119.6
C2	C3	H31	H32	117.5	239.8
C4	C3	H31	H32	241.8	120.2
H31	C3	C4	C5	295.1	173.6
H31	C3	C4	O4	57.5	293.6
H31	C3	C4	H4	176.2	53.8
C5	C4	C3	H32	179.4	293.9
C5	C4	C3	H31	295.1	173.6
C3	C4	C5	O4	124.6	119.9
C3	C4	C5	H4	242.3	240.3
O4	C4	C5	H4	117.7	120.4
C5	C4	O4	HO4	198.3	179.3
C6	C5	C4	N5	120.5	120.0
C6	C5	C4	H5	239.7	240.1
C4	C5	C6	C7	174.5	181.3
C4	C5	C6	O6	55.0	61.2
C4	C5	C6	H6	295.1	301.1
N5	C5	C4	H5	119.2	120.2
C4	C5	N5	C10	209.8	270.0
C4	C5	N5	HN5	28.9	90.0
O4	C4	C3	H32	301.8	53.9
O4	C4	C3	H31	57.5	293.6
C3	C4	O4	C5	237.7	240.6
C3	C4	O4	H4	118.8	120.2
C5	C4	O4	H4	241.1	239.6
O4	C4	C5	C6	179.5	186.4
O4	C4	C5	N5	59.0	66.4
O4	C4	C5	H5	299.8	306.3
H4	C4	C3	H32	60.6	174.1
H4	C4	C3	H31	176.2	53.8
C3	C4	H4	C5	118.8	119.2
C3	C4	H4	O4	237.7	239.7
C5	C4	H4	O4	118.9	120.5
H4	C4	C5	C6	61.8	66.0
H4	C4	C5	N5	301.3	306.1
H4	C4	C5	H5	182.1	185.9
H4	C4	O4	HO4	317.2	299.7
C2	O6	C6	C5	301.4	292.4
C6	C5	C4	O4	179.5	186.4
C6	C5	C4	H4	61.8	66.0
C4	C5	C6	N5	242.7	240.0
C4	C5	C6	H5	118.1	119.9
N5	C5	C6	H5	235.4	239.8
C6	C5	N5	C10	91.8	150.4
C6	C5	N5	HN5	270.8	330.4
C7	C6	C5	O6	119.5	120.1
C7	C6	C5	H6	239.4	240.1
C5	C6	C7	C8	181.0	180.0
C5	C6	C7	O7	299.2	300.0
C5	C6	C7	H7	57.2	60.0
O6	C6	C5	H6	119.9	120.1
N5	C5	C4	O4	59.0	66.4
N5	C5	C4	H4	301.3	306.1
C4	C5	N5	C6	118.1	119.6
C4	C5	N5	H5	242.8	239.8
C6	C5	N5	H5	124.8	120.2
N5	C5	C6	C7	291.8	301.3
N5	C5	C6	O6	172.3	181.2
N5	C5	C6	H6	52.4	61.1
C11	C10	N5	C5	177.9	180.0
C5	N5	C10	O10	355.1	360.0
C10	N5	C5	HN5	180.9	180.0
H5	C5	C4	O4	299.8	306.3
H5	C5	C4	H4	182.1	185.9
C4	C5	H5	C6	241.7	240.4
C4	C5	H5	N5	116.6	120.2
C6	C5	H5	N5	234.9	239.8
H5	C5	C6	C7	56.4	61.4
H5	C5	C6	O6	296.9	301.4
H5	C5	C6	H6	176.9	181.3
H5	C5	N5	C10	327.0	30.2
H5	C5	N5	HN5	146.0	210.2
C2	O6	C6	C7	175.3	172.3
C7	C6	C5	N5	291.8	301.3
C7	C6	C5	H5	56.4	61.4
C5	C6	C7	O6	237.0	239.7
C5	C6	C7	H6	121.7	119.9
O6	C6	C7	H6	244.7	240.2
C8	C7	C6	O7	241.8	240.1
C8	C7	C6	H7	123.8	120.1
C6	C7	C8	C9	184.6	180.0
C6	C7	C8	O8	305.1	299.9
C6	C7	C8	H8	63.7	60.0
O7	C7	C6	H7	242.0	240.0
C6	C7	O7	HO7	331.5	300.1
O6	C6	C5	N5	172.3	181.2
O6	C6	C5	H5	296.9	301.4
C5	C6	O6	C7	126.1	120.1
C5	C6	O6	H6	240.0	239.9
C7	C6	O6	H6	113.9	119.8
O6	C6	C7	C8	304.0	300.4
O6	C6	C7	O7	62.2	60.3
O6	C6	C7	H7	180.1	180.3
H6	C6	C5	N5	52.4	61.1
H6	C6	C5	H5	176.9	181.3
C5	C6	H6	C7	233.9	240.1
C5	C6	H6	O6	121.3	120.3
C7	C6	H6	O6	247.5	240.2
H6	C6	C7	C8	59.3	60.2
H6	C6	C7	O7	177.5	180.1
H6	C6	C7	H7	295.5	300.1
C8	C7	C6	O6	304.0	300.4
C8	C7	C6	H6	59.3	60.2
C6	C7	C8	O7	116.2	120.0
C6	C7	C8	H7	236.9	239.9
O7	C7	C8	H7	120.7	120.0
C8	C7	O7	HO7	91.8	60.0
C9	C8	C7	O8	239.4	240.1
C9	C8	C7	H8	120.8	120.0
C7	C8	C9	O9	163.5	180.0
C7	C8	C9	H92	45.9	299.9
C7	C8	C9	H91	285.5	59.9
O8	C8	C7	H8	241.4	240.0
C7	C8	O8	HO8	222.7	300.0
O7	C7	C6	O6	62.2	60.3
O7	C7	C6	H6	177.5	180.1
C6	C7	O7	C8	239.7	240.0
C6	C7	O7	H7	118.1	120.0
C8	C7	O7	H7	238.4	240.0
O7	C7	C8	C9	68.4	60.1
O7	C7	C8	O8	188.9	180.0
O7	C7	C8	H8	307.5	300.0
H7	C7	C6	O6	180.1	180.3
H7	C7	C6	H6	295.5	300.1
C6	C7	H7	C8	124.4	120.0
C6	C7	H7	O7	244.6	240.0
C8	C7	H7	O7	120.2	120.0
H7	C7	C8	C9	307.7	300.1
H7	C7	C8	O8	68.3	60.0
H7	C7	C8	H8	186.9	180.0
H7	C7	O7	HO7	213.3	180.0
C9	C8	C7	O7	68.4	60.1
C9	C8	C7	H7	307.7	300.1
C7	C8	C9	O8	122.8	119.9
C7	C8	C9	H8	239.8	239.9
O8	C8	C9	H8	117.0	120.0
C9	C8	O8	HO8	344.5	60.0
O9	C9	C8	H92	117.5	240.1
O9	C9	C8	H91	238.0	120.1
C8	C9	O9	HO9	68.8	180.1
H92	C9	C8	H91	120.5	240.0
O8	C8	C7	O7	188.9	180.0
O8	C8	C7	H7	68.3	60.0
C7	C8	O8	C9	238.2	240.1
C7	C8	O8	H8	119.6	120.1
C9	C8	O8	H8	241.3	240.0
O8	C8	C9	O9	40.7	60.1
O8	C8	C9	H92	283.1	180.0
O8	C8	C9	H91	162.6	300.0
H8	C8	C7	O7	307.5	300.0
H8	C8	C7	H7	186.9	180.0
C7	C8	H8	C9	121.0	120.0
C7	C8	H8	O8	238.5	240.0
C9	C8	H8	O8	117.5	120.0
H8	C8	C9	O9	283.7	300.1
H8	C8	C9	H92	166.2	60.0
H8	C8	C9	H91	45.7	180.0
H8	C8	O8	HO8	103.1	180.0
O9	C9	C8	O8	40.7	60.1
O9	C9	C8	H8	283.7	300.1
C8	C9	O9	H92	241.4	119.9
C8	C9	O9	H91	120.0	239.9
H92	C9	O9	H91	238.6	120.0
H92	C9	C8	O8	283.1	180.0
H92	C9	C8	H8	166.2	60.0
C8	C9	H92	O9	116.9	240.1
C8	C9	H92	H91	239.9	120.0
O9	C9	H92	H91	123.0	240.0
H92	C9	O9	HO9	187.4	60.1
H91	C9	C8	O8	162.6	300.0
H91	C9	C8	H8	45.7	180.0
C8	C9	H91	O9	241.1	120.0
C8	C9	H91	H92	120.5	240.0
O9	C9	H91	H92	239.4	120.0
H91	C9	O9	HO9	308.8	300.1
C5	N5	C10	C11	177.9	180.0
N5	C10	C11	O10	177.2	180.0
C11	C10	N5	HN5	358.9	360.0
H111	C11	C10	H113	119.3	240.0
H111	C11	C10	H112	240.2	120.0
H113	C11	C10	H112	120.9	240.0
C10	N5	C5	H5	327.0	30.2
C5	N5	C10	HN5	179.0	180.0
C11	C10	N5	O10	182.8	180.0
N5	C10	C11	H111	21.5	180.0
N5	C10	C11	H113	262.2	300.0
N5	C10	C11	H112	141.3	60.0
C11	C10	O10	N5	177.2	180.0
O10	C10	C11	H111	204.3	360.0
O10	C10	C11	H113	85.0	120.0
O10	C10	C11	H112	324.1	240.0
O10	C10	N5	HN5	176.1	180.0
H111	C11	C10	N5	21.5	180.0
H111	C11	C10	O10	204.3	360.0
C10	C11	H111	H113	239.6	120.0
C10	C11	H111	H112	121.4	240.0
H113	C11	H111	H112	241.8	120.0
H113	C11	C10	N5	262.2	300.0
H113	C11	C10	O10	85.0	120.0
C10	C11	H113	H111	120.7	240.0
C10	C11	H113	H112	238.2	120.0
H111	C11	H113	H112	117.5	240.0
H112	C11	C10	N5	141.3	60.0
H112	C11	C10	O10	324.1	240.0
C10	C11	H112	H111	238.8	120.0
C10	C11	H112	H113	121.3	240.0
H111	C11	H112	H113	242.5	120.0
C12	O2	C2	O6	61.9	57.0
H121	C12	O2	H122	234.7	240.0
H121	C12	O2	H123	125.3	120.0
H122	C12	O2	H123	250.6	240.0
O2	C12	H121	H122	125.3	120.0
O2	C12	H121	H123	234.7	240.0
H122	C12	H121	H123	109.4	120.0
O2	C12	H122	H121	231.1	240.0
O2	C12	H122	H123	115.5	120.0
H121	C12	H122	H123	244.4	240.0
O2	C12	H123	H121	128.9	120.0
O2	C12	H123	H122	244.5	240.0
H121	C12	H123	H122	115.6	120.0
HN5	N5	C5	H5	146.0	210.2
C5	N5	HN5	C10	180.9	180.0
HN5	N5	C10	O10	176.1	180.0
HO4	O4	C4	H4	317.2	299.7
HO7	O7	C7	H7	213.3	180.0
HO8	O8	C8	H8	103.1	180.0
HO9	O9	C9	H92	187.4	60.1
HO9	O9	C9	H91	308.8	300.1