PDB Chemical Component MN1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MN1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
C2 |
1.496 |
1.465 |
N |
C6 |
1.488 |
1.466 |
N |
H |
1.019 |
1.008 |
C2 |
C3 |
1.530 |
1.531 |
C2 |
H21 |
1.081 |
1.090 |
C2 |
H22 |
1.076 |
1.090 |
C3 |
C4 |
1.532 |
1.531 |
C3 |
H31 |
1.080 |
1.090 |
C3 |
H32 |
1.080 |
1.088 |
C4 |
C |
1.532 |
1.507 |
C4 |
C5 |
1.530 |
1.532 |
C4 |
H4 |
1.081 |
1.090 |
C |
O |
1.215 |
1.208 |
C |
OXT |
1.310 |
1.341 |
OXT |
HXT |
0.949 |
0.967 |
C5 |
C6 |
1.530 |
1.529 |
C5 |
H51 |
1.078 |
1.090 |
C5 |
H52 |
1.081 |
1.090 |
C6 |
H61 |
1.081 |
1.090 |
C6 |
H62 |
1.079 |
1.090 |
Bond Angles for MN1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N |
C6 |
118.4 |
107.3 |
C2 |
N |
H |
108.9 |
106.7 |
N |
C2 |
C3 |
108.3 |
109.8 |
N |
C2 |
H21 |
108.7 |
109.4 |
N |
C2 |
H22 |
110.7 |
109.4 |
C6 |
N |
H |
109.1 |
106.8 |
N |
C6 |
C5 |
108.4 |
109.9 |
N |
C6 |
H61 |
108.7 |
109.4 |
N |
C6 |
H62 |
109.9 |
109.4 |
C3 |
C2 |
H21 |
109.3 |
109.4 |
C3 |
C2 |
H22 |
109.9 |
109.4 |
C2 |
C3 |
C4 |
108.8 |
109.1 |
C2 |
C3 |
H31 |
109.9 |
109.5 |
C2 |
C3 |
H32 |
109.5 |
109.5 |
H21 |
C2 |
H22 |
109.9 |
109.4 |
C4 |
C3 |
H31 |
110.0 |
109.5 |
C4 |
C3 |
H32 |
108.6 |
109.5 |
C3 |
C4 |
C |
109.7 |
109.5 |
C3 |
C4 |
C5 |
108.6 |
109.0 |
C3 |
C4 |
H4 |
109.6 |
109.6 |
H31 |
C3 |
H32 |
110.1 |
109.6 |
C |
C4 |
C5 |
109.4 |
109.5 |
C |
C4 |
H4 |
109.9 |
109.6 |
C4 |
C |
O |
120.6 |
120.0 |
C4 |
C |
OXT |
115.5 |
120.0 |
C5 |
C4 |
H4 |
109.5 |
109.6 |
C4 |
C5 |
C6 |
108.8 |
109.2 |
C4 |
C5 |
H51 |
109.8 |
109.5 |
C4 |
C5 |
H52 |
108.8 |
109.6 |
O |
C |
OXT |
123.9 |
120.0 |
C |
OXT |
HXT |
115.5 |
120.0 |
C6 |
C5 |
H51 |
110.1 |
109.5 |
C6 |
C5 |
H52 |
109.3 |
109.6 |
C5 |
C6 |
H61 |
109.4 |
109.4 |
C5 |
C6 |
H62 |
110.2 |
109.4 |
H51 |
C5 |
H52 |
110.1 |
109.5 |
H61 |
C6 |
H62 |
110.2 |
109.3 |
Torsion Angles for MN1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N |
C2 |
H |
125.3 |
245.8 |
C2 |
N |
C6 |
C5 |
52.6 |
294.4 |
C2 |
N |
C6 |
H61 |
293.7 |
54.5 |
C2 |
N |
C6 |
H62 |
173.1 |
174.3 |
C3 |
C2 |
N |
H21 |
241.4 |
120.1 |
C3 |
C2 |
N |
H22 |
120.6 |
239.9 |
N |
C2 |
C3 |
C4 |
55.7 |
298.6 |
N |
C2 |
C3 |
H31 |
176.1 |
178.7 |
N |
C2 |
C3 |
H32 |
297.1 |
58.5 |
H21 |
C2 |
N |
H22 |
239.2 |
119.8 |
C2 |
N |
C6 |
H |
234.7 |
114.1 |
C6 |
N |
C2 |
C3 |
307.5 |
65.6 |
C6 |
N |
C2 |
H21 |
66.1 |
305.5 |
C6 |
N |
C2 |
H22 |
186.9 |
185.7 |
C4 |
C5 |
C6 |
N |
304.1 |
61.3 |
N |
C6 |
C5 |
H51 |
183.8 |
301.5 |
N |
C6 |
C5 |
H52 |
62.7 |
181.3 |
C5 |
C6 |
N |
H61 |
118.9 |
239.9 |
C5 |
C6 |
N |
H62 |
239.5 |
120.2 |
H61 |
C6 |
N |
H62 |
120.6 |
240.3 |
C2 |
N |
H |
C6 |
130.6 |
245.5 |
H |
N |
C2 |
C3 |
182.2 |
179.8 |
H |
N |
C2 |
H21 |
300.8 |
59.6 |
H |
N |
C2 |
H22 |
61.6 |
299.9 |
H |
N |
C6 |
C5 |
177.8 |
180.3 |
H |
N |
C6 |
H61 |
59.0 |
300.4 |
H |
N |
C6 |
H62 |
298.3 |
60.1 |
C3 |
C2 |
N |
C6 |
307.5 |
65.6 |
C3 |
C2 |
N |
H |
182.2 |
179.8 |
N |
C2 |
C3 |
H21 |
118.2 |
239.9 |
N |
C2 |
C3 |
H22 |
238.9 |
120.1 |
H21 |
C2 |
C3 |
H22 |
120.7 |
240.2 |
C4 |
C3 |
C2 |
H31 |
239.5 |
119.9 |
C4 |
C3 |
C2 |
H32 |
118.6 |
240.1 |
C2 |
C3 |
C4 |
C |
175.8 |
175.4 |
C2 |
C3 |
C4 |
C5 |
295.4 |
55.6 |
C2 |
C3 |
C4 |
H4 |
55.1 |
295.7 |
H31 |
C3 |
C2 |
H32 |
239.0 |
120.2 |
H21 |
C2 |
N |
C6 |
66.1 |
305.5 |
H21 |
C2 |
N |
H |
300.8 |
59.6 |
N |
C2 |
H21 |
C3 |
242.0 |
120.4 |
N |
C2 |
H21 |
H22 |
121.3 |
240.2 |
C3 |
C2 |
H21 |
H22 |
239.3 |
119.8 |
H21 |
C2 |
C3 |
C4 |
297.4 |
58.7 |
H21 |
C2 |
C3 |
H31 |
57.9 |
298.8 |
H21 |
C2 |
C3 |
H32 |
178.9 |
178.6 |
H22 |
C2 |
N |
C6 |
186.9 |
185.7 |
H22 |
C2 |
N |
H |
61.6 |
299.9 |
N |
C2 |
H22 |
C3 |
119.6 |
239.6 |
N |
C2 |
H22 |
H21 |
239.9 |
119.8 |
C3 |
C2 |
H22 |
H21 |
120.3 |
240.2 |
H22 |
C2 |
C3 |
C4 |
176.8 |
178.5 |
H22 |
C2 |
C3 |
H31 |
297.2 |
58.6 |
H22 |
C2 |
C3 |
H32 |
58.2 |
298.4 |
C4 |
C3 |
C2 |
H21 |
297.4 |
58.7 |
C4 |
C3 |
C2 |
H22 |
176.8 |
178.5 |
C2 |
C3 |
C4 |
H31 |
120.4 |
240.1 |
C2 |
C3 |
C4 |
H32 |
240.9 |
119.9 |
H31 |
C3 |
C4 |
H32 |
120.5 |
239.7 |
C |
C4 |
C3 |
C5 |
240.4 |
119.8 |
C |
C4 |
C3 |
H4 |
120.7 |
239.7 |
C3 |
C4 |
C |
O |
96.4 |
0.1 |
C3 |
C4 |
C |
OXT |
276.2 |
180.0 |
C5 |
C4 |
C3 |
H4 |
240.3 |
119.9 |
C3 |
C4 |
C5 |
C6 |
64.6 |
304.4 |
C3 |
C4 |
C5 |
H51 |
185.1 |
64.3 |
C3 |
C4 |
C5 |
H52 |
305.6 |
184.4 |
H31 |
C3 |
C2 |
H21 |
57.9 |
298.8 |
H31 |
C3 |
C2 |
H22 |
297.2 |
58.6 |
C2 |
C3 |
H31 |
C4 |
240.2 |
119.6 |
C2 |
C3 |
H31 |
H32 |
120.6 |
239.8 |
C4 |
C3 |
H31 |
H32 |
240.4 |
120.2 |
H31 |
C3 |
C4 |
C |
55.4 |
295.3 |
H31 |
C3 |
C4 |
C5 |
175.0 |
175.4 |
H31 |
C3 |
C4 |
H4 |
294.7 |
55.5 |
H32 |
C3 |
C2 |
H21 |
178.9 |
178.6 |
H32 |
C3 |
C2 |
H22 |
58.2 |
298.4 |
C2 |
C3 |
H32 |
C4 |
118.7 |
240.3 |
C2 |
C3 |
H32 |
H31 |
239.1 |
120.2 |
C4 |
C3 |
H32 |
H31 |
120.4 |
239.8 |
H32 |
C3 |
C4 |
C |
294.9 |
55.5 |
H32 |
C3 |
C4 |
C5 |
54.5 |
295.7 |
H32 |
C3 |
C4 |
H4 |
174.2 |
175.8 |
C |
C4 |
C3 |
H31 |
55.4 |
295.3 |
C |
C4 |
C3 |
H32 |
294.9 |
55.5 |
C3 |
C4 |
C |
C5 |
119.1 |
240.5 |
C3 |
C4 |
C |
H4 |
239.4 |
120.2 |
C5 |
C4 |
C |
H4 |
120.3 |
239.7 |
C |
C4 |
C5 |
C6 |
184.4 |
184.6 |
C |
C4 |
C5 |
H51 |
304.9 |
304.5 |
C |
C4 |
C5 |
H52 |
65.4 |
64.6 |
O |
C |
C4 |
OXT |
180.2 |
180.1 |
C4 |
C |
OXT |
HXT |
180.0 |
180.0 |
N |
C6 |
C5 |
C4 |
304.1 |
61.3 |
C5 |
C4 |
C3 |
H31 |
175.0 |
175.4 |
C5 |
C4 |
C3 |
H32 |
54.5 |
295.7 |
C3 |
C4 |
C5 |
C |
240.2 |
119.8 |
C3 |
C4 |
C5 |
H4 |
119.7 |
240.1 |
C |
C4 |
C5 |
H4 |
239.5 |
120.3 |
C5 |
C4 |
C |
O |
337.2 |
119.6 |
C5 |
C4 |
C |
OXT |
157.0 |
299.5 |
C6 |
C5 |
C4 |
H51 |
239.5 |
240.1 |
C6 |
C5 |
C4 |
H52 |
119.0 |
120.0 |
C4 |
C5 |
C6 |
H61 |
62.5 |
301.2 |
C4 |
C5 |
C6 |
H62 |
183.8 |
181.5 |
H51 |
C5 |
C4 |
H52 |
239.5 |
239.9 |
H4 |
C4 |
C3 |
H31 |
294.7 |
55.5 |
H4 |
C4 |
C3 |
H32 |
174.2 |
175.8 |
C3 |
C4 |
H4 |
C |
120.7 |
239.8 |
C3 |
C4 |
H4 |
C5 |
240.9 |
119.5 |
C |
C4 |
H4 |
C5 |
120.3 |
239.7 |
H4 |
C4 |
C |
O |
216.9 |
239.9 |
H4 |
C4 |
C |
OXT |
36.7 |
59.8 |
H4 |
C4 |
C5 |
C6 |
304.9 |
64.3 |
H4 |
C4 |
C5 |
H51 |
65.4 |
184.2 |
H4 |
C4 |
C5 |
H52 |
185.9 |
304.3 |
O |
C |
C4 |
C5 |
337.2 |
119.6 |
O |
C |
C4 |
H4 |
216.9 |
239.9 |
C4 |
C |
O |
OXT |
179.8 |
179.9 |
O |
C |
OXT |
HXT |
359.7 |
359.9 |
OXT |
C |
C4 |
C5 |
157.0 |
299.5 |
OXT |
C |
C4 |
H4 |
36.7 |
59.8 |
C4 |
C |
OXT |
O |
180.2 |
180.1 |
C5 |
C6 |
N |
H |
177.8 |
180.3 |
N |
C6 |
C5 |
H61 |
241.6 |
120.1 |
N |
C6 |
C5 |
H62 |
120.3 |
239.8 |
C6 |
C5 |
C4 |
H4 |
304.9 |
64.3 |
C4 |
C5 |
C6 |
H51 |
120.3 |
119.8 |
C4 |
C5 |
C6 |
H52 |
241.4 |
240.0 |
H51 |
C5 |
C6 |
H52 |
121.1 |
120.2 |
H61 |
C6 |
C5 |
H62 |
238.7 |
119.8 |
H51 |
C5 |
C4 |
H4 |
65.4 |
184.2 |
C4 |
C5 |
H51 |
C6 |
240.3 |
240.3 |
C4 |
C5 |
H51 |
H52 |
119.7 |
120.1 |
C6 |
C5 |
H51 |
H52 |
239.4 |
239.8 |
H51 |
C5 |
C6 |
H61 |
302.2 |
181.4 |
H51 |
C5 |
C6 |
H62 |
63.5 |
61.6 |
H52 |
C5 |
C4 |
H4 |
185.9 |
304.3 |
C4 |
C5 |
H52 |
C6 |
118.7 |
119.8 |
C4 |
C5 |
H52 |
H51 |
239.7 |
239.9 |
C6 |
C5 |
H52 |
H51 |
121.0 |
120.1 |
H52 |
C5 |
C6 |
H61 |
181.1 |
61.2 |
H52 |
C5 |
C6 |
H62 |
302.4 |
301.5 |
H61 |
C6 |
N |
H |
59.0 |
300.4 |
N |
C6 |
H61 |
C5 |
118.3 |
239.6 |
N |
C6 |
H61 |
H62 |
239.6 |
119.8 |
H61 |
C6 |
C5 |
H51 |
302.2 |
181.4 |
H61 |
C6 |
C5 |
H52 |
181.1 |
61.2 |
C5 |
C6 |
H61 |
H62 |
121.3 |
240.2 |
H62 |
C6 |
N |
H |
298.3 |
60.1 |
N |
C6 |
H62 |
C5 |
240.6 |
120.4 |
N |
C6 |
H62 |
H61 |
119.7 |
240.2 |
H62 |
C6 |
C5 |
H51 |
63.5 |
61.6 |
H62 |
C6 |
C5 |
H52 |
302.4 |
301.5 |
C5 |
C6 |
H62 |
H61 |
239.2 |
119.8 |