PDB Chemical Component MMJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MMJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C15 |
C10 |
1.522 |
1.507 |
| C10 |
N11 |
1.386 |
1.313 |
| C10 |
C9 |
1.516 |
1.337 |
| N11 |
C7 |
1.381 |
1.303 |
| C9 |
C12 |
1.542 |
1.507 |
| C9 |
S8 |
1.740 |
1.763 |
| C12 |
N13 |
1.485 |
1.469 |
| C7 |
C2 |
1.486 |
1.478 |
| C7 |
S8 |
1.729 |
1.762 |
| C3 |
C4 |
1.382 |
1.380 |
| C3 |
C2 |
1.399 |
1.395 |
| C4 |
C5 |
1.391 |
1.384 |
| C2 |
C1 |
1.416 |
1.396 |
| N13 |
C14 |
1.488 |
1.468 |
| C5 |
C6 |
1.416 |
1.384 |
| C1 |
C6 |
1.395 |
1.379 |
| C15 |
H1 |
1.100 |
1.090 |
| C15 |
H2 |
1.100 |
1.091 |
| C15 |
H3 |
1.100 |
1.089 |
| C12 |
H4 |
1.100 |
1.090 |
| C12 |
H5 |
1.099 |
1.090 |
| N13 |
H6 |
1.000 |
1.009 |
| C14 |
H8 |
1.100 |
1.090 |
| C14 |
H9 |
1.100 |
1.090 |
| C14 |
H10 |
1.100 |
1.091 |
| C3 |
H11 |
1.080 |
1.080 |
| C4 |
H12 |
1.080 |
1.080 |
| C5 |
H13 |
1.080 |
1.080 |
| C6 |
H14 |
1.080 |
1.079 |
| C1 |
H15 |
1.080 |
1.080 |
Bond Angles for MMJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C10 |
N11 |
121.2 |
122.1 |
| C15 |
C10 |
C9 |
126.1 |
122.1 |
| C10 |
C15 |
H1 |
109.5 |
109.5 |
| C10 |
C15 |
H2 |
109.5 |
109.4 |
| C10 |
C15 |
H3 |
109.5 |
109.5 |
| C9 |
C10 |
N11 |
112.6 |
115.9 |
| C10 |
N11 |
C7 |
114.7 |
117.1 |
| C10 |
C9 |
C12 |
137.5 |
125.9 |
| C10 |
C9 |
S8 |
106.6 |
108.2 |
| N11 |
C7 |
C2 |
131.0 |
125.5 |
| C12 |
C9 |
S8 |
115.9 |
125.9 |
| C9 |
C12 |
N13 |
118.7 |
109.4 |
| C9 |
C12 |
H4 |
107.1 |
109.5 |
| C9 |
C12 |
H5 |
107.1 |
109.5 |
| C12 |
N13 |
C14 |
123.9 |
111.0 |
| N13 |
C12 |
H4 |
107.1 |
109.5 |
| N13 |
C12 |
H5 |
107.1 |
109.5 |
| C12 |
N13 |
H6 |
105.8 |
111.0 |
| C7 |
C2 |
C1 |
123.2 |
120.1 |
| C3 |
C4 |
C5 |
119.9 |
120.1 |
| C4 |
C3 |
H11 |
119.5 |
120.0 |
| C3 |
C4 |
H12 |
120.1 |
120.0 |
| C3 |
C2 |
C1 |
120.5 |
119.7 |
| C4 |
C5 |
C6 |
119.6 |
120.3 |
| C5 |
C4 |
H12 |
120.1 |
119.9 |
| C4 |
C5 |
H13 |
120.2 |
119.8 |
| C2 |
C1 |
C6 |
117.8 |
119.9 |
| C2 |
C1 |
H15 |
121.1 |
120.1 |
| C14 |
N13 |
H6 |
105.7 |
111.0 |
| N13 |
C14 |
H8 |
109.5 |
109.5 |
| N13 |
C14 |
H9 |
109.5 |
109.5 |
| N13 |
C14 |
H10 |
109.5 |
109.4 |
| C6 |
C5 |
H13 |
120.2 |
119.9 |
| C5 |
C6 |
H14 |
119.4 |
119.9 |
| C1 |
C6 |
H14 |
119.3 |
120.0 |
| H1 |
C15 |
H2 |
109.5 |
109.4 |
| H1 |
C15 |
H3 |
109.5 |
109.5 |
| H2 |
C15 |
H3 |
109.5 |
109.5 |
| H4 |
C12 |
H5 |
109.5 |
109.5 |
| H8 |
C14 |
H9 |
109.5 |
109.4 |
| H8 |
C14 |
H10 |
109.4 |
109.5 |
| H9 |
C14 |
H10 |
109.5 |
109.4 |
Torsion Angles for MMJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C10 |
C15 |
N11 |
183.8 |
180.4 |
| C15 |
C10 |
N11 |
C7 |
182.0 |
179.8 |
| C15 |
C10 |
C9 |
C12 |
356.6 |
359.9 |
| C15 |
C10 |
C9 |
S8 |
179.0 |
180.0 |
| H1 |
C15 |
C10 |
H2 |
240.0 |
240.1 |
| H1 |
C15 |
C10 |
H3 |
120.0 |
120.1 |
| H2 |
C15 |
C10 |
H3 |
240.0 |
240.0 |
| C15 |
C10 |
N11 |
C9 |
183.3 |
180.3 |
| N11 |
C10 |
C15 |
H1 |
360.0 |
90.0 |
| N11 |
C10 |
C15 |
H2 |
120.0 |
209.9 |
| N11 |
C10 |
C15 |
H3 |
240.0 |
329.9 |
| N11 |
C10 |
C9 |
C12 |
180.1 |
180.2 |
| N11 |
C10 |
C9 |
S8 |
2.4 |
0.3 |
| C10 |
N11 |
C7 |
C2 |
183.1 |
180.0 |
| C15 |
C10 |
C9 |
N11 |
176.5 |
179.7 |
| C9 |
C10 |
C15 |
H1 |
183.7 |
270.4 |
| C9 |
C10 |
C15 |
H2 |
303.8 |
30.3 |
| C9 |
C10 |
C15 |
H3 |
63.7 |
150.3 |
| C9 |
C10 |
N11 |
C7 |
358.7 |
359.5 |
| C12 |
C9 |
C10 |
S8 |
177.6 |
179.9 |
| C10 |
C9 |
C12 |
N13 |
103.8 |
90.0 |
| C10 |
C9 |
C12 |
H4 |
225.1 |
210.1 |
| C10 |
C9 |
C12 |
H5 |
342.5 |
330.0 |
| N11 |
C7 |
C2 |
C1 |
162.1 |
0.0 |
| C12 |
C9 |
C10 |
N11 |
180.1 |
180.2 |
| C10 |
C9 |
C12 |
S8 |
182.5 |
180.1 |
| C9 |
C12 |
N13 |
C14 |
77.3 |
180.0 |
| N13 |
C12 |
C9 |
H4 |
238.7 |
240.0 |
| N13 |
C12 |
C9 |
H5 |
121.3 |
120.0 |
| C9 |
C12 |
N13 |
H6 |
199.2 |
304.0 |
| H4 |
C12 |
C9 |
H5 |
242.6 |
240.0 |
| S8 |
C9 |
C10 |
N11 |
2.4 |
0.3 |
| C10 |
C9 |
S8 |
C12 |
178.2 |
179.9 |
| S8 |
C9 |
C12 |
N13 |
281.3 |
270.0 |
| S8 |
C9 |
C12 |
H4 |
42.6 |
30.0 |
| S8 |
C9 |
C12 |
H5 |
159.9 |
150.0 |
| N13 |
C12 |
C9 |
S8 |
281.3 |
270.0 |
| C9 |
C12 |
N13 |
H4 |
121.3 |
120.0 |
| C9 |
C12 |
N13 |
H5 |
238.7 |
240.0 |
| C14 |
N13 |
C12 |
H6 |
238.1 |
236.0 |
| C12 |
N13 |
C14 |
H8 |
180.0 |
300.0 |
| C12 |
N13 |
C14 |
H9 |
300.0 |
60.0 |
| C12 |
N13 |
C14 |
H10 |
60.0 |
180.0 |
| H4 |
C12 |
N13 |
H5 |
117.4 |
120.0 |
| C3 |
C2 |
C7 |
C1 |
180.8 |
180.2 |
| C7 |
C2 |
C1 |
C6 |
183.1 |
179.6 |
| C7 |
C2 |
C1 |
H15 |
3.0 |
360.0 |
| C10 |
N11 |
C7 |
S8 |
359.4 |
0.5 |
| C4 |
C3 |
C2 |
C1 |
358.7 |
0.3 |
| C3 |
C4 |
C5 |
C6 |
359.9 |
360.0 |
| C5 |
C4 |
C3 |
H12 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
H13 |
179.9 |
180.0 |
| C7 |
C2 |
C3 |
C1 |
179.2 |
179.8 |
| C3 |
C2 |
C1 |
C6 |
2.2 |
359.4 |
| C3 |
C2 |
C1 |
H15 |
182.2 |
179.8 |
| C5 |
C4 |
C3 |
H11 |
180.3 |
180.1 |
| C3 |
C4 |
C5 |
H12 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H13 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H14 |
181.0 |
180.0 |
| C2 |
C1 |
C6 |
H14 |
178.0 |
180.3 |
| C14 |
N13 |
C12 |
H4 |
316.0 |
60.0 |
| C14 |
N13 |
C12 |
H5 |
198.6 |
300.0 |
| C12 |
N13 |
C14 |
H6 |
122.0 |
123.9 |
| H8 |
C14 |
N13 |
H9 |
240.0 |
240.0 |
| H8 |
C14 |
N13 |
H10 |
120.0 |
120.0 |
| H9 |
C14 |
N13 |
H10 |
240.0 |
240.0 |
| C6 |
C5 |
C4 |
H12 |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
H13 |
180.0 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
358.0 |
0.6 |
| C1 |
C6 |
C5 |
H14 |
180.0 |
179.7 |
| C2 |
C1 |
C6 |
H15 |
180.0 |
180.3 |
| C1 |
C6 |
C5 |
H13 |
181.0 |
179.7 |
| C5 |
C6 |
C1 |
H14 |
180.0 |
180.3 |
| H1 |
C15 |
C10 |
N11 |
360.0 |
90.0 |
| H1 |
C15 |
C10 |
C9 |
183.7 |
270.4 |
| C10 |
C15 |
H1 |
H2 |
120.0 |
119.9 |
| C10 |
C15 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C15 |
H1 |
H3 |
120.0 |
120.1 |
| H2 |
C15 |
C10 |
N11 |
120.0 |
209.9 |
| H2 |
C15 |
C10 |
C9 |
303.8 |
30.3 |
| C10 |
C15 |
H2 |
H1 |
240.0 |
240.1 |
| C10 |
C15 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C15 |
H2 |
H3 |
240.0 |
239.9 |
| H3 |
C15 |
C10 |
N11 |
240.0 |
329.9 |
| H3 |
C15 |
C10 |
C9 |
63.7 |
150.3 |
| C10 |
C15 |
H3 |
H1 |
120.0 |
120.0 |
| C10 |
C15 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C15 |
H3 |
H2 |
120.0 |
120.0 |
| H4 |
C12 |
C9 |
S8 |
42.6 |
30.0 |
| C9 |
C12 |
H4 |
N13 |
231.7 |
240.0 |
| C9 |
C12 |
H4 |
H5 |
115.8 |
120.0 |
| H4 |
C12 |
N13 |
C14 |
316.0 |
60.0 |
| N13 |
C12 |
H4 |
H5 |
244.2 |
240.0 |
| H4 |
C12 |
N13 |
H6 |
77.9 |
184.0 |
| H5 |
C12 |
C9 |
S8 |
159.9 |
150.0 |
| C9 |
C12 |
H5 |
N13 |
128.3 |
120.0 |
| C9 |
C12 |
H5 |
H4 |
244.1 |
240.0 |
| H5 |
C12 |
N13 |
C14 |
198.6 |
300.0 |
| N13 |
C12 |
H5 |
H4 |
115.8 |
120.0 |
| H5 |
C12 |
N13 |
H6 |
320.5 |
64.0 |
| C12 |
N13 |
H6 |
C14 |
227.1 |
236.1 |
| H6 |
N13 |
C12 |
H4 |
77.9 |
184.0 |
| H6 |
N13 |
C12 |
H5 |
320.5 |
64.0 |
| H6 |
N13 |
C14 |
H8 |
58.0 |
176.1 |
| H6 |
N13 |
C14 |
H9 |
178.0 |
296.1 |
| H6 |
N13 |
C14 |
H10 |
298.0 |
56.1 |
| H8 |
C14 |
N13 |
H6 |
58.0 |
176.1 |
| N13 |
C14 |
H8 |
H9 |
120.0 |
120.1 |
| N13 |
C14 |
H8 |
H10 |
240.0 |
240.0 |
| H9 |
C14 |
H8 |
H10 |
120.0 |
119.9 |
| H9 |
C14 |
N13 |
H6 |
178.0 |
296.1 |
| N13 |
C14 |
H9 |
H8 |
239.9 |
239.9 |
| N13 |
C14 |
H9 |
H10 |
120.0 |
120.0 |
| H8 |
C14 |
H9 |
H10 |
240.1 |
240.0 |
| H10 |
C14 |
N13 |
H6 |
298.0 |
56.1 |
| N13 |
C14 |
H10 |
H8 |
120.0 |
120.0 |
| N13 |
C14 |
H10 |
H9 |
240.0 |
240.0 |
| H8 |
C14 |
H10 |
H9 |
120.0 |
119.9 |
| H11 |
C3 |
C4 |
C5 |
180.3 |
180.1 |
| H11 |
C3 |
C4 |
H12 |
0.3 |
0.1 |
| H11 |
C3 |
C2 |
C1 |
178.7 |
180.2 |
| C3 |
C4 |
H12 |
C5 |
180.0 |
180.0 |
| H12 |
C4 |
C3 |
H11 |
0.3 |
0.1 |
| H12 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
| H12 |
C4 |
C5 |
H13 |
359.9 |
0.0 |
| C4 |
C5 |
H13 |
C6 |
180.0 |
180.0 |
| H13 |
C5 |
C4 |
H12 |
359.9 |
0.0 |
| H13 |
C5 |
C6 |
H14 |
1.0 |
360.0 |
| H14 |
C6 |
C5 |
H13 |
1.0 |
360.0 |
| C2 |
C1 |
H15 |
C6 |
180.0 |
179.7 |
| H15 |
C1 |
C6 |
H14 |
358.0 |
359.9 |