PDB Chemical Component MME
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MME
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.454 |
1.468 |
| N |
CM |
1.348 |
1.469 |
| N |
H |
1.019 |
1.008 |
| CA |
C |
1.527 |
1.506 |
| CA |
CB |
1.526 |
1.529 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.251 |
1.208 |
| C |
OXT |
1.321 |
1.342 |
| CB |
CG |
1.516 |
1.529 |
| CB |
HB2 |
1.115 |
1.089 |
| CB |
HB3 |
1.116 |
1.089 |
| CG |
SD |
1.817 |
1.813 |
| CG |
HG2 |
1.115 |
1.090 |
| CG |
HG3 |
1.115 |
1.090 |
| SD |
CE |
1.797 |
1.813 |
| CE |
HE1 |
1.115 |
1.090 |
| CE |
HE2 |
1.114 |
1.089 |
| CE |
HE3 |
1.114 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
| CM |
HM1 |
1.114 |
1.089 |
| CM |
HM2 |
1.115 |
1.090 |
| CM |
HM3 |
1.115 |
1.090 |
Bond Angles for MME
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CM |
117.1 |
106.8 |
| CA |
N |
H |
109.4 |
106.7 |
| N |
CA |
C |
110.7 |
109.5 |
| N |
CA |
CB |
111.6 |
109.5 |
| N |
CA |
HA |
106.7 |
109.4 |
| CM |
N |
H |
109.5 |
106.7 |
| N |
CM |
HM1 |
117.0 |
109.6 |
| N |
CM |
HM2 |
109.4 |
109.4 |
| N |
CM |
HM3 |
109.4 |
109.5 |
| C |
CA |
CB |
107.7 |
109.5 |
| C |
CA |
HA |
110.6 |
109.5 |
| CA |
C |
O |
119.6 |
120.0 |
| CA |
C |
OXT |
117.6 |
120.0 |
| CB |
CA |
HA |
109.6 |
109.4 |
| CA |
CB |
CG |
114.9 |
109.5 |
| CA |
CB |
HB2 |
110.3 |
109.4 |
| CA |
CB |
HB3 |
110.3 |
109.5 |
| O |
C |
OXT |
122.7 |
120.0 |
| C |
OXT |
HXT |
117.7 |
120.0 |
| CG |
CB |
HB2 |
110.2 |
109.5 |
| CG |
CB |
HB3 |
110.2 |
109.5 |
| CB |
CG |
SD |
110.1 |
109.5 |
| CB |
CG |
HG2 |
112.0 |
109.5 |
| CB |
CG |
HG3 |
112.0 |
109.5 |
| HB2 |
CB |
HB3 |
100.0 |
109.5 |
| SD |
CG |
HG2 |
111.9 |
109.5 |
| SD |
CG |
HG3 |
112.0 |
109.5 |
| CG |
SD |
CE |
97.1 |
100.1 |
| HG2 |
CG |
HG3 |
98.4 |
109.4 |
| SD |
CE |
HE1 |
97.1 |
109.5 |
| SD |
CE |
HE2 |
117.0 |
109.5 |
| SD |
CE |
HE3 |
117.0 |
109.5 |
| HE1 |
CE |
HE2 |
117.0 |
109.5 |
| HE1 |
CE |
HE3 |
117.0 |
109.5 |
| HE2 |
CE |
HE3 |
93.4 |
109.4 |
| HM1 |
CM |
HM2 |
109.5 |
109.5 |
| HM1 |
CM |
HM3 |
109.5 |
109.4 |
| HM2 |
CM |
HM3 |
100.7 |
109.5 |
Torsion Angles for MME
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CM |
N |
CA |
H |
125.3 |
113.8 |
| CA |
N |
CM |
HM1 |
180.0 |
180.0 |
| CA |
N |
CM |
HM2 |
305.3 |
300.0 |
| CA |
N |
CM |
HM3 |
54.7 |
59.9 |
| C |
CA |
N |
CB |
120.0 |
120.1 |
| C |
CA |
N |
HA |
239.7 |
240.0 |
| N |
CA |
C |
O |
306.9 |
150.0 |
| N |
CA |
C |
OXT |
129.3 |
330.0 |
| CB |
CA |
N |
HA |
119.7 |
119.9 |
| N |
CA |
CB |
CG |
281.0 |
300.1 |
| N |
CA |
CB |
HB2 |
46.3 |
60.1 |
| N |
CA |
CB |
HB3 |
155.8 |
180.0 |
| CA |
N |
CM |
H |
234.8 |
246.2 |
| CM |
N |
CA |
C |
291.4 |
270.1 |
| CM |
N |
CA |
CB |
171.4 |
150.0 |
| CM |
N |
CA |
HA |
51.7 |
30.1 |
| HM1 |
CM |
N |
HM2 |
234.7 |
240.0 |
| HM1 |
CM |
N |
HM3 |
125.3 |
120.0 |
| HM2 |
CM |
N |
HM3 |
250.6 |
240.0 |
| CA |
N |
H |
CM |
129.5 |
113.8 |
| H |
N |
CA |
C |
166.1 |
156.3 |
| H |
N |
CA |
CB |
46.1 |
36.2 |
| H |
N |
CA |
HA |
286.4 |
276.3 |
| H |
N |
CM |
HM1 |
305.2 |
293.8 |
| H |
N |
CM |
HM2 |
70.5 |
53.8 |
| H |
N |
CM |
HM3 |
179.9 |
173.8 |
| C |
CA |
N |
CM |
291.4 |
270.1 |
| C |
CA |
N |
H |
166.1 |
156.3 |
| N |
CA |
C |
CB |
237.7 |
239.9 |
| N |
CA |
C |
HA |
118.0 |
120.0 |
| CB |
CA |
C |
HA |
240.2 |
240.1 |
| C |
CA |
CB |
CG |
159.3 |
180.0 |
| C |
CA |
CB |
HB2 |
284.6 |
300.0 |
| C |
CA |
CB |
HB3 |
34.1 |
60.0 |
| O |
C |
CA |
OXT |
177.6 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| CB |
CA |
N |
CM |
171.4 |
150.0 |
| CB |
CA |
N |
H |
46.1 |
36.2 |
| N |
CA |
CB |
C |
121.7 |
120.1 |
| N |
CA |
CB |
HA |
242.1 |
240.1 |
| C |
CA |
CB |
HA |
120.4 |
120.0 |
| CB |
CA |
C |
O |
69.2 |
270.0 |
| CB |
CA |
C |
OXT |
251.6 |
90.1 |
| CG |
CB |
CA |
HB2 |
234.7 |
240.0 |
| CG |
CB |
CA |
HB3 |
125.2 |
120.0 |
| CA |
CB |
CG |
SD |
185.3 |
180.0 |
| CA |
CB |
CG |
HG2 |
310.5 |
300.0 |
| CA |
CB |
CG |
HG3 |
60.0 |
59.9 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.0 |
| HA |
CA |
N |
CM |
51.7 |
30.1 |
| HA |
CA |
N |
H |
286.4 |
276.3 |
| N |
CA |
HA |
C |
239.6 |
240.0 |
| N |
CA |
HA |
CB |
121.0 |
120.0 |
| C |
CA |
HA |
CB |
241.4 |
240.0 |
| HA |
CA |
C |
O |
188.9 |
30.0 |
| HA |
CA |
C |
OXT |
11.4 |
210.0 |
| HA |
CA |
CB |
CG |
39.0 |
60.0 |
| HA |
CA |
CB |
HB2 |
164.2 |
180.0 |
| HA |
CA |
CB |
HB3 |
273.7 |
300.0 |
| O |
C |
CA |
CB |
69.2 |
270.0 |
| O |
C |
CA |
HA |
188.9 |
30.0 |
| CA |
C |
O |
OXT |
182.6 |
180.0 |
| O |
C |
OXT |
HXT |
2.5 |
0.1 |
| OXT |
C |
CA |
CB |
251.6 |
90.1 |
| OXT |
C |
CA |
HA |
11.4 |
210.0 |
| CA |
C |
OXT |
O |
177.5 |
180.0 |
| CG |
CB |
CA |
HA |
39.0 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.4 |
120.0 |
| SD |
CG |
CB |
HG2 |
234.8 |
239.9 |
| SD |
CG |
CB |
HG3 |
125.3 |
120.0 |
| CB |
CG |
SD |
CE |
268.7 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
240.1 |
| HB2 |
CB |
CA |
HA |
164.2 |
180.0 |
| CA |
CB |
HB2 |
CG |
232.1 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
116.1 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
244.0 |
240.0 |
| HB2 |
CB |
CG |
SD |
60.0 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
185.2 |
180.1 |
| HB2 |
CB |
CG |
HG3 |
294.7 |
300.0 |
| HB3 |
CB |
CA |
HA |
273.7 |
300.0 |
| CA |
CB |
HB3 |
CG |
127.9 |
120.1 |
| CA |
CB |
HB3 |
HB2 |
243.9 |
240.1 |
| CG |
CB |
HB3 |
HB2 |
116.0 |
120.0 |
| HB3 |
CB |
CG |
SD |
310.6 |
300.0 |
| HB3 |
CB |
CG |
HG2 |
75.8 |
60.1 |
| HB3 |
CB |
CG |
HG3 |
185.3 |
180.0 |
| SD |
CG |
CB |
HB2 |
60.0 |
60.0 |
| SD |
CG |
CB |
HB3 |
310.6 |
300.0 |
| CB |
CG |
SD |
HG2 |
125.2 |
120.1 |
| CB |
CG |
SD |
HG3 |
234.7 |
240.0 |
| HG2 |
CG |
SD |
HG3 |
109.5 |
119.9 |
| CG |
SD |
CE |
HE1 |
180.0 |
180.0 |
| CG |
SD |
CE |
HE2 |
305.3 |
300.0 |
| CG |
SD |
CE |
HE3 |
54.8 |
60.0 |
| HG2 |
CG |
CB |
HB2 |
185.2 |
180.1 |
| HG2 |
CG |
CB |
HB3 |
75.8 |
60.1 |
| CB |
CG |
HG2 |
SD |
235.8 |
239.9 |
| CB |
CG |
HG2 |
HG3 |
117.9 |
119.9 |
| SD |
CG |
HG2 |
HG3 |
242.1 |
240.0 |
| HG2 |
CG |
SD |
CE |
143.4 |
60.0 |
| HG3 |
CG |
CB |
HB2 |
294.7 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
185.3 |
180.0 |
| CB |
CG |
HG3 |
SD |
124.2 |
120.1 |
| CB |
CG |
HG3 |
HG2 |
242.1 |
240.1 |
| SD |
CG |
HG3 |
HG2 |
117.9 |
120.0 |
| HG3 |
CG |
SD |
CE |
34.0 |
300.1 |
| CE |
SD |
CG |
HG2 |
143.4 |
60.0 |
| CE |
SD |
CG |
HG3 |
34.0 |
300.1 |
| HE1 |
CE |
SD |
HE2 |
234.7 |
240.0 |
| HE1 |
CE |
SD |
HE3 |
125.2 |
120.1 |
| HE2 |
CE |
SD |
HE3 |
250.5 |
240.1 |
| SD |
CE |
HE1 |
HE2 |
125.2 |
120.0 |
| SD |
CE |
HE1 |
HE3 |
234.8 |
239.9 |
| HE2 |
CE |
HE1 |
HE3 |
109.5 |
119.9 |
| SD |
CE |
HE2 |
HE1 |
245.5 |
239.9 |
| SD |
CE |
HE2 |
HE3 |
122.7 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
237.3 |
240.1 |
| SD |
CE |
HE3 |
HE1 |
114.5 |
120.1 |
| SD |
CE |
HE3 |
HE2 |
237.3 |
240.0 |
| HE1 |
CE |
HE3 |
HE2 |
122.8 |
119.9 |
| HM1 |
CM |
N |
H |
305.2 |
293.8 |
| N |
CM |
HM1 |
HM2 |
125.2 |
120.0 |
| N |
CM |
HM1 |
HM3 |
234.8 |
240.0 |
| HM2 |
CM |
HM1 |
HM3 |
109.5 |
120.0 |
| HM2 |
CM |
N |
H |
70.5 |
53.8 |
| N |
CM |
HM2 |
HM1 |
230.5 |
239.9 |
| N |
CM |
HM2 |
HM3 |
115.2 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
244.7 |
240.0 |
| HM3 |
CM |
N |
H |
179.9 |
173.8 |
| N |
CM |
HM3 |
HM1 |
129.5 |
120.1 |
| N |
CM |
HM3 |
HM2 |
244.8 |
240.1 |
| HM1 |
CM |
HM3 |
HM2 |
115.3 |
120.0 |