PDB Chemical Component MLY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MLY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.458 |
1.469 |
| N |
H |
1.020 |
1.008 |
| N |
H2 |
1.020 |
1.009 |
| CA |
CB |
1.488 |
1.530 |
| CA |
C |
1.522 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.526 |
1.528 |
| CB |
HB2 |
1.114 |
1.089 |
| CB |
HB3 |
1.116 |
1.090 |
| CG |
CD |
1.520 |
1.530 |
| CG |
HG2 |
1.114 |
1.089 |
| CG |
HG3 |
1.116 |
1.090 |
| CD |
CE |
1.530 |
1.529 |
| CD |
HD2 |
1.116 |
1.090 |
| CD |
HD3 |
1.115 |
1.090 |
| CE |
NZ |
1.472 |
1.468 |
| CE |
HE2 |
1.115 |
1.091 |
| CE |
HE3 |
1.115 |
1.090 |
| NZ |
CH1 |
1.475 |
1.469 |
| NZ |
CH2 |
1.486 |
1.468 |
| CH1 |
HH11 |
1.115 |
1.090 |
| CH1 |
HH12 |
1.115 |
1.090 |
| CH1 |
HH13 |
1.115 |
1.090 |
| CH2 |
HH21 |
1.115 |
1.090 |
| CH2 |
HH22 |
1.116 |
1.089 |
| CH2 |
HH23 |
1.115 |
1.089 |
| C |
O |
1.223 |
1.208 |
| C |
OXT |
1.341 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for MLY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
112.3 |
106.8 |
| CA |
N |
H2 |
111.1 |
106.7 |
| N |
CA |
CB |
112.3 |
109.4 |
| N |
CA |
C |
113.4 |
109.5 |
| N |
CA |
HA |
105.5 |
109.4 |
| H |
N |
H2 |
111.1 |
106.7 |
| CB |
CA |
C |
112.1 |
109.6 |
| CB |
CA |
HA |
107.0 |
109.5 |
| CA |
CB |
CG |
114.4 |
109.5 |
| CA |
CB |
HB2 |
110.4 |
109.4 |
| CA |
CB |
HB3 |
110.4 |
109.4 |
| C |
CA |
HA |
105.8 |
109.5 |
| CA |
C |
O |
121.9 |
120.0 |
| CA |
C |
OXT |
116.4 |
120.1 |
| CG |
CB |
HB2 |
110.4 |
109.5 |
| CG |
CB |
HB3 |
110.4 |
109.5 |
| CB |
CG |
CD |
114.0 |
109.5 |
| CB |
CG |
HG2 |
110.6 |
109.5 |
| CB |
CG |
HG3 |
110.6 |
109.5 |
| HB2 |
CB |
HB3 |
99.9 |
109.5 |
| CD |
CG |
HG2 |
110.5 |
109.4 |
| CD |
CG |
HG3 |
110.5 |
109.4 |
| CG |
CD |
CE |
112.0 |
109.6 |
| CG |
CD |
HD2 |
111.3 |
109.4 |
| CG |
CD |
HD3 |
111.3 |
109.4 |
| HG2 |
CG |
HG3 |
99.7 |
109.5 |
| CE |
CD |
HD2 |
111.2 |
109.5 |
| CE |
CD |
HD3 |
111.2 |
109.5 |
| CD |
CE |
NZ |
114.1 |
109.5 |
| CD |
CE |
HE2 |
110.5 |
109.4 |
| CD |
CE |
HE3 |
110.5 |
109.5 |
| HD2 |
CD |
HD3 |
99.1 |
109.4 |
| NZ |
CE |
HE2 |
110.5 |
109.4 |
| NZ |
CE |
HE3 |
110.5 |
109.5 |
| CE |
NZ |
CH1 |
109.9 |
106.8 |
| CE |
NZ |
CH2 |
109.9 |
106.8 |
| HE2 |
CE |
HE3 |
99.7 |
109.4 |
| CH1 |
NZ |
CH2 |
113.2 |
106.7 |
| NZ |
CH1 |
HH11 |
109.9 |
109.5 |
| NZ |
CH1 |
HH12 |
112.1 |
109.5 |
| NZ |
CH1 |
HH13 |
112.1 |
109.4 |
| NZ |
CH2 |
HH21 |
109.9 |
109.5 |
| NZ |
CH2 |
HH22 |
112.0 |
109.5 |
| NZ |
CH2 |
HH23 |
112.1 |
109.5 |
| HH11 |
CH1 |
HH12 |
112.0 |
109.5 |
| HH11 |
CH1 |
HH13 |
112.0 |
109.4 |
| HH12 |
CH1 |
HH13 |
98.4 |
109.5 |
| HH21 |
CH2 |
HH22 |
112.0 |
109.5 |
| HH21 |
CH2 |
HH23 |
112.1 |
109.5 |
| HH22 |
CH2 |
HH23 |
98.3 |
109.5 |
| O |
C |
OXT |
121.6 |
119.9 |
| C |
OXT |
HXT |
116.4 |
120.1 |
Torsion Angles for MLY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.2 |
113.8 |
| CB |
CA |
N |
C |
231.7 |
239.9 |
| CB |
CA |
N |
HA |
116.3 |
119.9 |
| N |
CA |
CB |
CG |
274.5 |
300.1 |
| N |
CA |
CB |
HB2 |
39.7 |
180.0 |
| N |
CA |
CB |
HB3 |
149.2 |
60.0 |
| C |
CA |
N |
HA |
244.6 |
240.0 |
| N |
CA |
C |
O |
339.5 |
329.9 |
| N |
CA |
C |
OXT |
156.6 |
150.0 |
| CA |
N |
H |
H2 |
234.8 |
246.2 |
| H |
N |
CA |
CB |
180.0 |
53.7 |
| H |
N |
CA |
C |
308.3 |
173.8 |
| H |
N |
CA |
HA |
63.7 |
293.7 |
| CA |
N |
H2 |
H |
125.9 |
113.8 |
| H2 |
N |
CA |
CB |
54.8 |
299.9 |
| H2 |
N |
CA |
C |
183.1 |
60.0 |
| H2 |
N |
CA |
HA |
298.5 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.7 |
| CB |
CA |
N |
H2 |
54.8 |
299.9 |
| N |
CA |
CB |
C |
129.1 |
120.0 |
| N |
CA |
CB |
HA |
244.6 |
240.1 |
| C |
CA |
CB |
HA |
115.6 |
120.0 |
| CB |
CA |
C |
O |
108.0 |
89.9 |
| CB |
CA |
C |
OXT |
285.1 |
270.1 |
| CG |
CB |
CA |
HB2 |
234.8 |
120.1 |
| CG |
CB |
CA |
HB3 |
125.2 |
240.0 |
| CA |
CB |
CG |
CD |
310.4 |
180.0 |
| CA |
CB |
CG |
HG2 |
75.6 |
60.0 |
| CA |
CB |
CG |
HG3 |
185.1 |
300.0 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
119.9 |
| C |
CA |
N |
H |
308.3 |
173.8 |
| C |
CA |
N |
H2 |
183.1 |
60.0 |
| N |
CA |
C |
CB |
231.5 |
240.0 |
| N |
CA |
C |
HA |
115.2 |
119.9 |
| CB |
CA |
C |
HA |
243.7 |
240.0 |
| C |
CA |
CB |
CG |
145.4 |
180.0 |
| C |
CA |
CB |
HB2 |
270.7 |
59.9 |
| C |
CA |
CB |
HB3 |
20.2 |
300.0 |
| O |
C |
CA |
OXT |
182.9 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
179.9 |
| HA |
CA |
N |
H |
63.7 |
293.7 |
| HA |
CA |
N |
H2 |
298.5 |
180.0 |
| N |
CA |
HA |
CB |
119.9 |
119.9 |
| N |
CA |
HA |
C |
239.5 |
240.0 |
| CB |
CA |
HA |
C |
119.7 |
120.1 |
| HA |
CA |
CB |
CG |
29.8 |
60.0 |
| HA |
CA |
CB |
HB2 |
155.1 |
299.9 |
| HA |
CA |
CB |
HB3 |
264.6 |
180.0 |
| HA |
CA |
C |
O |
224.3 |
210.0 |
| HA |
CA |
C |
OXT |
41.4 |
30.1 |
| CG |
CB |
CA |
C |
145.4 |
180.0 |
| CG |
CB |
CA |
HA |
29.8 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
240.0 |
| CA |
CB |
CG |
HB3 |
234.8 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
240.0 |
| CD |
CG |
CB |
HG2 |
234.7 |
120.0 |
| CD |
CG |
CB |
HG3 |
125.2 |
240.1 |
| CB |
CG |
CD |
CE |
211.4 |
180.0 |
| CB |
CG |
CD |
HD2 |
336.7 |
59.9 |
| CB |
CG |
CD |
HD3 |
86.2 |
300.0 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
120.0 |
| HB2 |
CB |
CA |
C |
270.7 |
59.9 |
| HB2 |
CB |
CA |
HA |
155.1 |
299.9 |
| CA |
CB |
HB2 |
CG |
232.5 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
116.3 |
240.1 |
| CG |
CB |
HB2 |
HB3 |
243.8 |
120.0 |
| HB2 |
CB |
CG |
CD |
185.1 |
300.0 |
| HB2 |
CB |
CG |
HG2 |
310.4 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
59.9 |
60.0 |
| HB3 |
CB |
CA |
C |
20.2 |
300.0 |
| HB3 |
CB |
CA |
HA |
264.6 |
180.0 |
| CA |
CB |
HB3 |
CG |
127.5 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
243.7 |
119.9 |
| CG |
CB |
HB3 |
HB2 |
116.2 |
239.9 |
| HB3 |
CB |
CG |
CD |
75.6 |
60.1 |
| HB3 |
CB |
CG |
HG2 |
200.9 |
300.0 |
| HB3 |
CB |
CG |
HG3 |
310.4 |
180.0 |
| CD |
CG |
CB |
HB2 |
185.1 |
300.0 |
| CD |
CG |
CB |
HB3 |
75.6 |
60.1 |
| CB |
CG |
CD |
HG2 |
125.3 |
239.9 |
| CB |
CG |
CD |
HG3 |
234.7 |
120.0 |
| HG2 |
CG |
CD |
HG3 |
109.4 |
240.1 |
| CE |
CD |
CG |
HD2 |
234.7 |
120.1 |
| CE |
CD |
CG |
HD3 |
125.2 |
240.0 |
| CG |
CD |
CE |
NZ |
198.5 |
179.9 |
| CG |
CD |
CE |
HE2 |
323.8 |
60.0 |
| CG |
CD |
CE |
HE3 |
73.3 |
300.0 |
| HD2 |
CD |
CG |
HD3 |
250.5 |
119.9 |
| HG2 |
CG |
CB |
HB2 |
310.4 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
200.9 |
300.0 |
| CB |
CG |
HG2 |
CD |
232.8 |
120.1 |
| CB |
CG |
HG2 |
HG3 |
116.4 |
240.0 |
| CD |
CG |
HG2 |
HG3 |
243.6 |
119.9 |
| HG2 |
CG |
CD |
CE |
86.1 |
300.1 |
| HG2 |
CG |
CD |
HD2 |
211.4 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
320.9 |
60.1 |
| HG3 |
CG |
CB |
HB2 |
59.9 |
60.0 |
| HG3 |
CG |
CB |
HB3 |
310.4 |
180.0 |
| CB |
CG |
HG3 |
CD |
127.2 |
240.0 |
| CB |
CG |
HG3 |
HG2 |
243.6 |
120.1 |
| CD |
CG |
HG3 |
HG2 |
116.4 |
240.1 |
| HG3 |
CG |
CD |
CE |
336.7 |
60.0 |
| HG3 |
CG |
CD |
HD2 |
102.0 |
299.9 |
| HG3 |
CG |
CD |
HD3 |
211.5 |
180.0 |
| CE |
CD |
CG |
HG2 |
86.1 |
300.1 |
| CE |
CD |
CG |
HG3 |
336.7 |
60.0 |
| CG |
CD |
CE |
HD2 |
125.3 |
239.9 |
| CG |
CD |
CE |
HD3 |
234.7 |
120.0 |
| HD2 |
CD |
CE |
HD3 |
109.4 |
240.1 |
| NZ |
CE |
CD |
HE2 |
234.7 |
120.0 |
| NZ |
CE |
CD |
HE3 |
125.2 |
239.9 |
| CD |
CE |
NZ |
CH1 |
192.2 |
180.0 |
| CD |
CE |
NZ |
CH2 |
317.4 |
293.8 |
| HE2 |
CE |
CD |
HE3 |
250.5 |
119.9 |
| HD2 |
CD |
CG |
HG2 |
211.4 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
102.0 |
299.9 |
| CG |
CD |
HD2 |
CE |
234.3 |
120.1 |
| CG |
CD |
HD2 |
HD3 |
117.2 |
240.1 |
| CE |
CD |
HD2 |
HD3 |
242.9 |
120.0 |
| HD2 |
CD |
CE |
NZ |
73.2 |
300.0 |
| HD2 |
CD |
CE |
HE2 |
198.5 |
180.0 |
| HD2 |
CD |
CE |
HE3 |
308.0 |
60.1 |
| HD3 |
CD |
CG |
HG2 |
320.9 |
60.1 |
| HD3 |
CD |
CG |
HG3 |
211.5 |
180.0 |
| CG |
CD |
HD3 |
CE |
125.7 |
239.9 |
| CG |
CD |
HD3 |
HD2 |
242.8 |
119.9 |
| CE |
CD |
HD3 |
HD2 |
117.1 |
240.0 |
| HD3 |
CD |
CE |
NZ |
323.8 |
59.9 |
| HD3 |
CD |
CE |
HE2 |
89.1 |
299.9 |
| HD3 |
CD |
CE |
HE3 |
198.6 |
180.0 |
| NZ |
CE |
CD |
HD2 |
73.2 |
300.0 |
| NZ |
CE |
CD |
HD3 |
323.8 |
59.9 |
| CD |
CE |
NZ |
HE2 |
125.3 |
240.0 |
| CD |
CE |
NZ |
HE3 |
234.7 |
120.1 |
| HE2 |
CE |
NZ |
HE3 |
109.4 |
240.0 |
| CH1 |
NZ |
CE |
CH2 |
234.8 |
246.1 |
| CE |
NZ |
CH1 |
HH11 |
180.0 |
180.0 |
| CE |
NZ |
CH1 |
HH12 |
305.3 |
300.1 |
| CE |
NZ |
CH1 |
HH13 |
54.8 |
60.1 |
| CE |
NZ |
CH2 |
HH21 |
180.0 |
66.2 |
| CE |
NZ |
CH2 |
HH22 |
305.2 |
186.2 |
| CE |
NZ |
CH2 |
HH23 |
54.7 |
306.2 |
| HE2 |
CE |
CD |
HD2 |
198.5 |
180.0 |
| HE2 |
CE |
CD |
HD3 |
89.1 |
299.9 |
| CD |
CE |
HE2 |
NZ |
232.7 |
120.0 |
| CD |
CE |
HE2 |
HE3 |
116.4 |
240.0 |
| NZ |
CE |
HE2 |
HE3 |
243.7 |
120.0 |
| HE2 |
CE |
NZ |
CH1 |
66.9 |
299.9 |
| HE2 |
CE |
NZ |
CH2 |
192.1 |
53.8 |
| HE3 |
CE |
CD |
HD2 |
308.0 |
60.1 |
| HE3 |
CE |
CD |
HD3 |
198.6 |
180.0 |
| CD |
CE |
HE3 |
NZ |
127.3 |
239.9 |
| CD |
CE |
HE3 |
HE2 |
243.6 |
119.9 |
| NZ |
CE |
HE3 |
HE2 |
116.3 |
240.0 |
| HE3 |
CE |
NZ |
CH1 |
317.5 |
59.9 |
| HE3 |
CE |
NZ |
CH2 |
82.7 |
173.7 |
| CH1 |
NZ |
CE |
HE2 |
66.9 |
299.9 |
| CH1 |
NZ |
CE |
HE3 |
317.5 |
59.9 |
| CE |
NZ |
CH1 |
CH2 |
123.3 |
113.9 |
| CH1 |
NZ |
CH2 |
HH21 |
303.3 |
180.1 |
| CH1 |
NZ |
CH2 |
HH22 |
68.5 |
300.1 |
| CH1 |
NZ |
CH2 |
HH23 |
178.0 |
60.1 |
| HH11 |
CH1 |
NZ |
HH12 |
234.7 |
239.9 |
| HH11 |
CH1 |
NZ |
HH13 |
125.2 |
119.9 |
| HH12 |
CH1 |
NZ |
HH13 |
250.5 |
240.0 |
| CH2 |
NZ |
CE |
HE2 |
192.1 |
53.8 |
| CH2 |
NZ |
CE |
HE3 |
82.7 |
173.7 |
| CE |
NZ |
CH2 |
CH1 |
236.7 |
246.1 |
| CH2 |
NZ |
CH1 |
HH11 |
56.7 |
66.1 |
| CH2 |
NZ |
CH1 |
HH12 |
182.0 |
186.2 |
| CH2 |
NZ |
CH1 |
HH13 |
291.5 |
306.2 |
| HH21 |
CH2 |
NZ |
HH22 |
234.8 |
240.0 |
| HH21 |
CH2 |
NZ |
HH23 |
125.3 |
120.0 |
| HH22 |
CH2 |
NZ |
HH23 |
250.5 |
240.0 |
| HH11 |
CH1 |
NZ |
CH2 |
56.7 |
66.1 |
| NZ |
CH1 |
HH11 |
HH12 |
125.3 |
120.1 |
| NZ |
CH1 |
HH11 |
HH13 |
234.7 |
240.1 |
| HH12 |
CH1 |
HH11 |
HH13 |
109.4 |
120.0 |
| HH12 |
CH1 |
NZ |
CH2 |
182.0 |
186.2 |
| NZ |
CH1 |
HH12 |
HH11 |
235.9 |
239.9 |
| NZ |
CH1 |
HH12 |
HH13 |
118.0 |
120.0 |
| HH11 |
CH1 |
HH12 |
HH13 |
242.1 |
240.1 |
| HH13 |
CH1 |
NZ |
CH2 |
291.5 |
306.2 |
| NZ |
CH1 |
HH13 |
HH11 |
124.1 |
120.0 |
| NZ |
CH1 |
HH13 |
HH12 |
242.0 |
240.0 |
| HH11 |
CH1 |
HH13 |
HH12 |
117.9 |
120.0 |
| NZ |
CH2 |
HH21 |
HH22 |
125.2 |
120.0 |
| NZ |
CH2 |
HH21 |
HH23 |
234.7 |
240.0 |
| HH22 |
CH2 |
HH21 |
HH23 |
109.4 |
120.0 |
| NZ |
CH2 |
HH22 |
HH21 |
235.9 |
240.0 |
| NZ |
CH2 |
HH22 |
HH23 |
118.0 |
120.0 |
| HH21 |
CH2 |
HH22 |
HH23 |
242.0 |
240.0 |
| NZ |
CH2 |
HH23 |
HH21 |
124.1 |
120.0 |
| NZ |
CH2 |
HH23 |
HH22 |
242.0 |
240.0 |
| HH21 |
CH2 |
HH23 |
HH22 |
117.9 |
120.0 |
| O |
C |
CA |
HA |
224.3 |
210.0 |
| CA |
C |
O |
OXT |
177.0 |
180.1 |
| O |
C |
OXT |
HXT |
357.1 |
0.1 |
| OXT |
C |
CA |
HA |
41.4 |
30.1 |
| CA |
C |
OXT |
O |
182.9 |
179.9 |