Atom Nomenclature for MLG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MLG

Atom Name (V3) Atom Name (V2)
C06 C06
C05 C05
C04 C04
CL08 CL08
C03 C03
C02 C02
CL07 CL07
C01 C01
O09 O09
C11 C11
C10 C10
C12 C12
N13 N13
C17 C17
C14 C14
C15 C15
C16 C16
H06 H06
H05 H05
H03 H03
H111 1H11
H112 2H11
H101 1H10
H102 2H10
H121 1H12
H122 2H12
H171 1H17
H172 2H17
H173 3H17
H141 1H14
H142 2H14
H16 H16