PDB Chemical Component MLE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MLE
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CN |
1.506 |
1.469 |
N |
CA |
1.462 |
1.469 |
N |
H |
1.000 |
1.008 |
CN |
HN1 |
1.100 |
1.090 |
CN |
HN2 |
1.100 |
1.090 |
CN |
HN3 |
1.100 |
1.090 |
CA |
CB |
1.536 |
1.530 |
CA |
C |
1.523 |
1.507 |
CA |
HA |
1.100 |
1.091 |
CB |
CG |
1.540 |
1.529 |
CB |
HB2 |
1.100 |
1.091 |
CB |
HB3 |
1.100 |
1.090 |
CG |
CD1 |
1.504 |
1.530 |
CG |
CD2 |
1.517 |
1.529 |
CG |
HG |
1.100 |
1.090 |
CD1 |
HD11 |
1.100 |
1.090 |
CD1 |
HD12 |
1.100 |
1.090 |
CD1 |
HD13 |
1.100 |
1.091 |
CD2 |
HD21 |
1.100 |
1.090 |
CD2 |
HD22 |
1.100 |
1.090 |
CD2 |
HD23 |
1.100 |
1.090 |
C |
O |
1.231 |
1.208 |
C |
OXT |
1.329 |
1.342 |
OXT |
HXT |
0.950 |
0.967 |
Bond Angles for MLE
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CN |
N |
CA |
119.5 |
111.0 |
CN |
N |
H |
106.3 |
111.0 |
N |
CN |
HN1 |
109.5 |
109.4 |
N |
CN |
HN2 |
109.5 |
109.5 |
N |
CN |
HN3 |
109.4 |
109.4 |
CA |
N |
H |
106.2 |
111.0 |
N |
CA |
CB |
106.5 |
109.5 |
N |
CA |
C |
112.8 |
109.5 |
N |
CA |
HA |
110.7 |
109.5 |
HN1 |
CN |
HN2 |
109.5 |
109.5 |
HN1 |
CN |
HN3 |
109.4 |
109.5 |
HN2 |
CN |
HN3 |
109.5 |
109.5 |
CB |
CA |
C |
113.2 |
109.5 |
CB |
CA |
HA |
110.2 |
109.4 |
CA |
CB |
CG |
117.7 |
109.5 |
CA |
CB |
HB2 |
106.8 |
109.5 |
CA |
CB |
HB3 |
106.8 |
109.5 |
C |
CA |
HA |
103.5 |
109.4 |
CA |
C |
O |
122.6 |
120.0 |
CA |
C |
OXT |
117.5 |
120.0 |
CG |
CB |
HB2 |
106.8 |
109.5 |
CG |
CB |
HB3 |
106.8 |
109.5 |
CB |
CG |
CD1 |
109.9 |
109.5 |
CB |
CG |
CD2 |
109.6 |
109.5 |
CB |
CG |
HG |
110.1 |
109.5 |
HB2 |
CB |
HB3 |
112.0 |
109.5 |
CD1 |
CG |
CD2 |
112.4 |
109.5 |
CD1 |
CG |
HG |
107.2 |
109.4 |
CG |
CD1 |
HD11 |
109.5 |
109.5 |
CG |
CD1 |
HD12 |
109.5 |
109.5 |
CG |
CD1 |
HD13 |
109.4 |
109.4 |
CD2 |
CG |
HG |
107.5 |
109.5 |
CG |
CD2 |
HD21 |
109.5 |
109.5 |
CG |
CD2 |
HD22 |
109.5 |
109.5 |
CG |
CD2 |
HD23 |
109.4 |
109.5 |
HD11 |
CD1 |
HD12 |
109.5 |
109.5 |
HD11 |
CD1 |
HD13 |
109.5 |
109.5 |
HD12 |
CD1 |
HD13 |
109.5 |
109.5 |
HD21 |
CD2 |
HD22 |
109.4 |
109.5 |
HD21 |
CD2 |
HD23 |
109.5 |
109.4 |
HD22 |
CD2 |
HD23 |
109.5 |
109.4 |
O |
C |
OXT |
119.9 |
120.0 |
C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for MLE
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
CN |
H |
240.0 |
236.0 |
CN |
N |
CA |
CB |
300.9 |
153.9 |
CN |
N |
CA |
C |
65.6 |
274.0 |
CN |
N |
CA |
HA |
181.1 |
34.0 |
HN1 |
CN |
N |
HN2 |
240.0 |
240.0 |
HN1 |
CN |
N |
HN3 |
120.0 |
120.0 |
HN2 |
CN |
N |
HN3 |
240.0 |
240.0 |
CN |
N |
CA |
H |
120.0 |
124.0 |
CA |
N |
CN |
HN1 |
180.0 |
295.3 |
CA |
N |
CN |
HN2 |
300.0 |
55.3 |
CA |
N |
CN |
HN3 |
60.0 |
175.3 |
CB |
CA |
N |
C |
235.3 |
239.9 |
CB |
CA |
N |
HA |
119.8 |
119.9 |
N |
CA |
CB |
CG |
304.2 |
294.4 |
N |
CA |
CB |
HB2 |
64.2 |
54.4 |
N |
CA |
CB |
HB3 |
184.2 |
174.3 |
C |
CA |
N |
HA |
244.5 |
240.0 |
N |
CA |
C |
O |
359.3 |
332.9 |
N |
CA |
C |
OXT |
176.9 |
152.9 |
CN |
N |
H |
CA |
231.7 |
236.0 |
H |
N |
CN |
HN1 |
300.0 |
59.3 |
H |
N |
CN |
HN2 |
60.0 |
179.3 |
H |
N |
CN |
HN3 |
180.0 |
299.3 |
H |
N |
CA |
CB |
180.9 |
29.9 |
H |
N |
CA |
C |
305.6 |
150.0 |
H |
N |
CA |
HA |
61.1 |
270.0 |
HN1 |
CN |
N |
CA |
180.0 |
295.3 |
HN1 |
CN |
N |
H |
300.0 |
59.3 |
N |
CN |
HN1 |
HN2 |
120.0 |
120.0 |
N |
CN |
HN1 |
HN3 |
240.0 |
240.0 |
HN2 |
CN |
HN1 |
HN3 |
120.0 |
120.0 |
HN2 |
CN |
N |
CA |
300.0 |
55.3 |
HN2 |
CN |
N |
H |
60.0 |
179.3 |
N |
CN |
HN2 |
HN1 |
239.9 |
240.0 |
N |
CN |
HN2 |
HN3 |
120.0 |
120.0 |
HN1 |
CN |
HN2 |
HN3 |
240.0 |
240.0 |
HN3 |
CN |
N |
CA |
60.0 |
175.3 |
HN3 |
CN |
N |
H |
180.0 |
299.3 |
N |
CN |
HN3 |
HN1 |
120.0 |
120.0 |
N |
CN |
HN3 |
HN2 |
240.0 |
240.0 |
HN1 |
CN |
HN3 |
HN2 |
120.0 |
120.0 |
CB |
CA |
N |
H |
180.9 |
29.9 |
N |
CA |
CB |
C |
124.5 |
120.1 |
N |
CA |
CB |
HA |
239.9 |
240.0 |
C |
CA |
CB |
HA |
115.4 |
120.0 |
CB |
CA |
C |
O |
120.3 |
92.9 |
CB |
CA |
C |
OXT |
297.9 |
273.0 |
CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
CG |
CB |
CA |
HB3 |
120.0 |
120.1 |
CA |
CB |
CG |
CD1 |
174.1 |
174.3 |
CA |
CB |
CG |
CD2 |
298.1 |
294.3 |
CA |
CB |
CG |
HG |
56.2 |
54.4 |
HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
C |
CA |
N |
H |
305.6 |
150.0 |
N |
CA |
C |
CB |
239.0 |
239.9 |
N |
CA |
C |
HA |
119.7 |
120.0 |
CB |
CA |
C |
HA |
240.7 |
240.1 |
C |
CA |
CB |
CG |
179.7 |
174.3 |
C |
CA |
CB |
HB2 |
299.7 |
294.3 |
C |
CA |
CB |
HB3 |
59.7 |
54.3 |
O |
C |
CA |
OXT |
182.4 |
179.9 |
CA |
C |
OXT |
HXT |
182.3 |
180.0 |
HA |
CA |
N |
H |
61.1 |
270.0 |
N |
CA |
HA |
CB |
117.5 |
120.0 |
N |
CA |
HA |
C |
238.9 |
240.0 |
CB |
CA |
HA |
C |
121.4 |
120.0 |
HA |
CA |
CB |
CG |
64.3 |
54.3 |
HA |
CA |
CB |
HB2 |
184.3 |
174.3 |
HA |
CA |
CB |
HB3 |
304.3 |
294.3 |
HA |
CA |
C |
O |
239.6 |
212.9 |
HA |
CA |
C |
OXT |
57.2 |
32.9 |
CG |
CB |
CA |
C |
179.7 |
174.3 |
CG |
CB |
CA |
HA |
64.3 |
54.3 |
CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
CA |
CB |
CG |
HB3 |
240.0 |
240.0 |
HB2 |
CB |
CG |
HB3 |
120.0 |
120.0 |
CD1 |
CG |
CB |
CD2 |
236.0 |
240.0 |
CD1 |
CG |
CB |
HG |
117.9 |
119.9 |
CB |
CG |
CD1 |
HD11 |
180.0 |
184.6 |
CB |
CG |
CD1 |
HD12 |
300.0 |
304.7 |
CB |
CG |
CD1 |
HD13 |
60.0 |
64.6 |
CD2 |
CG |
CB |
HG |
241.9 |
240.0 |
CB |
CG |
CD2 |
HD21 |
180.0 |
60.0 |
CB |
CG |
CD2 |
HD22 |
300.0 |
180.0 |
CB |
CG |
CD2 |
HD23 |
60.0 |
300.0 |
HB2 |
CB |
CA |
C |
299.7 |
294.3 |
HB2 |
CB |
CA |
HA |
184.3 |
174.3 |
CA |
CB |
HB2 |
CG |
233.2 |
240.0 |
CA |
CB |
HB2 |
HB3 |
116.6 |
120.0 |
CG |
CB |
HB2 |
HB3 |
243.4 |
240.0 |
HB2 |
CB |
CG |
CD1 |
54.1 |
54.3 |
HB2 |
CB |
CG |
CD2 |
178.1 |
174.4 |
HB2 |
CB |
CG |
HG |
296.2 |
294.4 |
HB3 |
CB |
CA |
C |
59.7 |
54.3 |
HB3 |
CB |
CA |
HA |
304.3 |
294.3 |
CA |
CB |
HB3 |
CG |
126.8 |
120.0 |
CA |
CB |
HB3 |
HB2 |
243.4 |
240.0 |
CG |
CB |
HB3 |
HB2 |
116.6 |
120.0 |
HB3 |
CB |
CG |
CD1 |
294.1 |
294.3 |
HB3 |
CB |
CG |
CD2 |
58.2 |
54.4 |
HB3 |
CB |
CG |
HG |
176.2 |
174.4 |
CD1 |
CG |
CB |
HB2 |
54.1 |
54.3 |
CD1 |
CG |
CB |
HB3 |
294.1 |
294.3 |
CB |
CG |
CD1 |
CD2 |
122.4 |
120.1 |
CB |
CG |
CD1 |
HG |
240.3 |
240.0 |
CD2 |
CG |
CD1 |
HG |
117.9 |
119.9 |
CD1 |
CG |
CD2 |
HD21 |
302.6 |
180.0 |
CD1 |
CG |
CD2 |
HD22 |
62.5 |
300.1 |
CD1 |
CG |
CD2 |
HD23 |
182.6 |
60.1 |
HD11 |
CD1 |
CG |
HD12 |
240.0 |
239.9 |
HD11 |
CD1 |
CG |
HD13 |
120.0 |
120.0 |
HD12 |
CD1 |
CG |
HD13 |
240.0 |
240.0 |
CD2 |
CG |
CB |
HB2 |
178.1 |
174.4 |
CD2 |
CG |
CB |
HB3 |
58.2 |
54.4 |
CB |
CG |
CD2 |
CD1 |
237.4 |
239.9 |
CB |
CG |
CD2 |
HG |
119.7 |
120.1 |
CD1 |
CG |
CD2 |
HG |
242.2 |
240.1 |
CD2 |
CG |
CD1 |
HD11 |
57.6 |
64.5 |
CD2 |
CG |
CD1 |
HD12 |
177.6 |
184.6 |
CD2 |
CG |
CD1 |
HD13 |
297.6 |
304.5 |
HD21 |
CD2 |
CG |
HD22 |
240.0 |
239.9 |
HD21 |
CD2 |
CG |
HD23 |
120.0 |
120.0 |
HD22 |
CD2 |
CG |
HD23 |
240.0 |
240.0 |
HG |
CG |
CB |
HB2 |
296.2 |
294.4 |
HG |
CG |
CB |
HB3 |
176.2 |
174.4 |
CB |
CG |
HG |
CD1 |
119.6 |
120.0 |
CB |
CG |
HG |
CD2 |
240.6 |
239.9 |
CD1 |
CG |
HG |
CD2 |
121.1 |
119.9 |
HG |
CG |
CD1 |
HD11 |
299.7 |
304.6 |
HG |
CG |
CD1 |
HD12 |
59.7 |
64.6 |
HG |
CG |
CD1 |
HD13 |
179.7 |
184.6 |
HG |
CG |
CD2 |
HD21 |
60.3 |
299.9 |
HG |
CG |
CD2 |
HD22 |
180.3 |
60.0 |
HG |
CG |
CD2 |
HD23 |
300.3 |
179.9 |
HD11 |
CD1 |
CG |
CD2 |
57.6 |
64.5 |
HD11 |
CD1 |
CG |
HG |
299.7 |
304.6 |
CG |
CD1 |
HD11 |
HD12 |
120.0 |
120.1 |
CG |
CD1 |
HD11 |
HD13 |
240.0 |
240.1 |
HD12 |
CD1 |
HD11 |
HD13 |
120.0 |
120.0 |
HD12 |
CD1 |
CG |
CD2 |
177.6 |
184.6 |
HD12 |
CD1 |
CG |
HG |
59.7 |
64.6 |
CG |
CD1 |
HD12 |
HD11 |
240.0 |
239.9 |
CG |
CD1 |
HD12 |
HD13 |
120.0 |
119.9 |
HD11 |
CD1 |
HD12 |
HD13 |
240.0 |
240.0 |
HD13 |
CD1 |
CG |
CD2 |
297.6 |
304.5 |
HD13 |
CD1 |
CG |
HG |
179.7 |
184.6 |
CG |
CD1 |
HD13 |
HD11 |
120.0 |
120.0 |
CG |
CD1 |
HD13 |
HD12 |
240.0 |
240.0 |
HD11 |
CD1 |
HD13 |
HD12 |
120.0 |
120.0 |
HD21 |
CD2 |
CG |
HG |
60.3 |
299.9 |
CG |
CD2 |
HD21 |
HD22 |
120.0 |
120.1 |
CG |
CD2 |
HD21 |
HD23 |
240.0 |
240.0 |
HD22 |
CD2 |
HD21 |
HD23 |
120.0 |
119.9 |
HD22 |
CD2 |
CG |
HG |
180.3 |
60.0 |
CG |
CD2 |
HD22 |
HD21 |
240.0 |
239.9 |
CG |
CD2 |
HD22 |
HD23 |
120.0 |
120.0 |
HD21 |
CD2 |
HD22 |
HD23 |
240.0 |
240.1 |
HD23 |
CD2 |
CG |
HG |
300.3 |
179.9 |
CG |
CD2 |
HD23 |
HD21 |
120.0 |
120.0 |
CG |
CD2 |
HD23 |
HD22 |
240.0 |
239.9 |
HD21 |
CD2 |
HD23 |
HD22 |
120.0 |
119.9 |
O |
C |
CA |
HA |
239.6 |
212.9 |
CA |
C |
O |
OXT |
177.5 |
180.1 |
O |
C |
OXT |
HXT |
360.0 |
0.0 |
OXT |
C |
CA |
HA |
57.2 |
32.9 |
CA |
C |
OXT |
O |
182.4 |
179.9 |