PDB Chemical Component ML9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ML9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C13 C14 1.427 1.400
C14 C15 1.398 1.382
C14 H14 1.081 1.080
C16 C15 1.391 1.390
C15 H15 1.080 1.081
C18 N17 1.380 1.318
C18 C13 1.426 1.393
C18 H18 1.080 1.080
C9 C13 1.509 1.482
C6 C5 1.406 1.403
C5 C4 1.405 1.412
C5 C10 1.466 1.413
C21 C6 1.498 1.506
N1 C6 1.366 1.320
N3 C4 1.370 1.329
C4 N7 1.446 1.372
N17 C16 1.392 1.323
C16 O19 1.396 1.356
N12 C2 1.390 1.380
N1 C2 1.354 1.328
C2 N3 1.349 1.324
C10 C9 1.343 1.368
C10 H10 1.080 1.080
C9 C8 1.525 1.465
N7 C8 1.429 1.347
C8 O11 1.245 1.218
C23 C22 1.567 1.530
C23 C24 1.533 1.530
C23 H23 1.100 1.090
C23 H23A 1.100 1.090
C22 C27 1.566 1.531
C27 C26 1.541 1.530
C27 H27 1.100 1.090
C27 H27A 1.100 1.090
C24 C25 1.551 1.530
C24 H24 1.100 1.090
C24 H24A 1.100 1.090
C25 C26 1.546 1.530
C26 H26 1.100 1.090
C26 H26A 1.100 1.090
N7 C22 1.520 1.465
C22 H22 1.100 1.090
C25 O28 1.434 1.428
C25 H25 1.100 1.090
C21 H21 1.100 1.090
C21 H21A 1.100 1.091
C21 H21B 1.100 1.090
C20 O19 1.419 1.430
C20 H20 1.100 1.090
C20 H20A 1.100 1.090
C20 H20B 1.100 1.090
O31 C30 1.428 1.430
C29 C30 1.516 1.530
C30 H30 1.100 1.091
C30 H30A 1.100 1.089
O28 C29 1.434 1.429
C29 H29 1.100 1.090
C29 H29A 1.100 1.090
N12 HN12 1.000 0.970
N12 HN1A 1.000 0.970
O31 HO31 0.951 0.968

Bond Angles for ML9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C13 C14 H14 118.6 120.9
C15 C14 H14 118.6 120.8
C14 C15 H15 121.1 120.4
C16 C15 H15 121.2 120.3
C13 C18 N17 123.7 120.6
N17 C18 H18 118.2 119.7
C18 N17 C16 117.8 121.8
C13 C18 H18 118.1 119.7
C6 C5 C4 115.6 118.5
C6 C5 C10 124.1 121.2
C4 C5 C10 120.3 120.3
C5 C4 N7 118.4 120.3
C5 C10 C9 123.2 119.0
C5 C10 H10 118.4 120.5
N3 C4 N7 120.2 120.9
C4 N7 C8 121.8 120.7
C4 N7 C22 117.9 119.7
N17 C16 O19 122.8 119.6
C16 O19 C20 115.2 117.0
N1 C2 N3 122.5 122.4
C9 C10 H10 118.4 120.5
C10 C9 C8 118.2 119.4
C9 C8 O11 119.0 119.8
N7 C8 O11 122.9 119.8
C24 C23 C22 111.4 109.5
C22 C23 H23 108.9 109.5
C22 C23 H23A 108.8 109.5
C23 C22 C27 111.9 109.5
C23 C22 H22 106.8 109.5
C24 C23 H23 108.8 109.5
C24 C23 H23A 108.8 109.5
C23 C24 C25 110.6 109.5
C23 C24 H24 109.1 109.5
C23 C24 H24A 109.1 109.4
H23 C23 H23A 110.1 109.5
C22 C27 H27 109.1 109.5
C22 C27 H27A 109.2 109.5
C26 C27 H27 109.2 109.5
C26 C27 H27A 109.1 109.5
C27 C26 H26 109.1 109.5
C27 C26 H26A 109.1 109.5
H27 C27 H27A 109.8 109.4
C25 C24 H24 109.1 109.5
C25 C24 H24A 109.1 109.5
C24 C25 C26 110.5 109.5
C24 C25 O28 107.6 109.5
C24 C25 H25 110.7 109.4
H24 C24 H24A 109.9 109.5
C25 C26 H26 109.1 109.5
C25 C26 H26A 109.1 109.4
H26 C26 H26A 109.8 109.4
N7 C22 H22 107.6 109.5
O28 C25 H25 109.8 109.5
C25 O28 C29 113.4 114.0
H21 C21 H21A 109.5 109.4
H21 C21 H21B 109.5 109.5
H21A C21 H21B 109.5 109.4
O19 C20 H20 109.5 109.4
O19 C20 H20A 109.5 109.5
O19 C20 H20B 109.5 109.5
H20 C20 H20A 109.5 109.5
H20 C20 H20B 109.5 109.5
H20A C20 H20B 109.5 109.5
O31 C30 H30 109.7 109.4
O31 C30 H30A 109.7 109.5
C29 C30 H30 109.7 109.5
C29 C30 H30A 109.7 109.5
H30 C30 H30A 109.3 109.5
O28 C29 H29 110.0 109.5
O28 C29 H29A 110.0 109.5
H29 C29 H29A 108.9 109.5
HN12 N12 HN1A 109.5 120.0

Torsion Angles for ML9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C15 C14 C13 H14 180.0 179.7
C13 C14 C15 H15 180.0 180.3
C13 C14 C15 H14 180.0 180.3
C16 C15 C14 H15 180.0 180.0
H14 C14 C15 H15 360.0 360.0
C16 C15 C14 H14 180.0 180.0
C14 C15 C16 H15 180.0 180.0
H15 C15 C14 H14 360.0 360.0
C13 C18 N17 H18 180.0 180.9
C18 N17 C16 O19 180.1 179.4
C18 C13 C14 H14 179.9 180.3
N17 C18 C13 H18 180.0 179.1
C13 C18 N17 C16 360.0 0.9
C13 C18 H18 N17 180.0 179.1
H18 C18 N17 C16 180.0 180.0
C9 C13 C14 H14 360.0 0.2
C9 C13 C18 N17 180.0 179.5
C9 C13 C18 H18 0.0 0.3
C4 C5 C6 C10 180.1 180.3
C6 C5 C4 N7 179.3 179.7
C6 C5 C10 C9 180.3 180.3
C6 C5 C10 H10 0.3 0.3
C6 C5 C4 C10 179.9 179.7
C4 C5 C10 C9 0.2 360.0
C4 C5 C10 H10 180.2 180.0
N3 C4 C5 N7 180.1 180.0
C5 C4 N7 C8 0.3 360.0
C5 C4 N7 C22 180.4 180.0
C6 C5 C10 C4 180.1 180.3
C10 C5 C4 N7 359.4 0.1
C9 C10 C5 H10 180.0 180.0
C5 C10 C9 C8 0.5 360.0
C5 C4 N3 N7 179.9 180.0
N3 C4 N7 C8 180.3 180.0
N3 C4 N7 C22 0.3 0.0
N7 C4 C5 C10 359.4 0.1
C4 N7 C8 O11 180.0 180.0
C4 N7 C22 H22 5.3 359.9
N17 C16 C15 H15 180.2 180.0
C16 N17 C18 H18 180.0 180.0
N17 C16 O19 C20 360.0 360.0
O19 C16 C15 H15 360.0 360.0
C16 O19 C20 H20 180.0 300.0
C16 O19 C20 H20A 300.0 60.0
C16 O19 C20 H20B 60.0 180.0
C2 N3 C4 N7 180.3 180.5
C5 C10 C9 H10 180.0 180.0
C10 C9 C8 O11 179.6 180.0
C5 C10 H10 C9 180.0 180.0
H10 C10 C9 C8 180.5 180.0
C4 N7 C8 C9 0.3 360.0
C8 C9 C10 H10 180.5 180.0
N7 C8 C9 O11 179.7 180.1
C4 N7 C8 C22 180.0 180.0
C9 C8 N7 O11 180.3 179.9
C4 N7 C22 C23 122.2 120.0
C24 C23 C22 H23 240.0 120.0
C24 C23 C22 H23A 120.0 240.0
C22 C23 C24 C25 304.8 300.0
C22 C23 C24 H24 64.8 60.0
C22 C23 C24 H24A 184.8 180.0
H23 C23 C22 H23A 240.0 120.0
C23 C22 C27 H27 66.5 180.0
C23 C22 C27 H27A 186.5 60.0
N7 C22 C23 H22 242.7 240.0
C22 C23 C24 H23 120.0 240.0
C22 C23 C24 H23A 240.0 120.0
C24 C23 C22 C27 53.1 60.0
C24 C23 C22 H22 295.9 300.0
H23 C23 C24 H23A 120.0 240.0
C25 C24 C23 H24 240.0 240.0
C25 C24 C23 H24A 120.0 120.0
C23 C24 C25 C26 58.8 59.9
C23 C24 C25 O28 180.6 180.0
C23 C24 C25 H25 300.6 299.9
H24 C24 C23 H24A 240.0 240.0
C24 C23 H23 C22 121.6 240.0
C22 C23 H23 H23A 119.2 240.0
H23 C23 C22 C27 173.1 300.0
H23 C23 C22 H22 55.9 180.0
C24 C23 H23 H23A 240.8 120.0
H23 C23 C24 C25 184.8 60.0
H23 C23 C24 H24 304.8 180.0
H23 C23 C24 H24A 64.8 300.0
C24 C23 H23A C22 238.4 120.0
C22 C23 H23A H23 240.8 120.0
H23A C23 C22 C27 293.1 180.0
H23A C23 C22 H22 175.9 60.0
C24 C23 H23A H23 119.2 240.0
H23A C23 C24 C25 64.8 180.0
H23A C23 C24 H24 184.8 300.0
H23A C23 C24 H24A 304.9 60.0
C4 N7 C22 C27 248.0 240.0
C27 C22 C23 H23 173.1 300.0
C27 C22 C23 H23A 293.1 180.0
C23 C22 C27 H22 243.2 240.0
C26 C27 C22 H27 240.0 120.0
C26 C27 C22 H27A 120.0 240.0
C22 C27 C26 H26 176.8 180.0
C22 C27 C26 H26A 296.8 300.0
H27 C27 C22 H27A 240.0 120.0
C23 C22 C27 C26 306.5 300.0
C22 C27 C26 H27 120.0 240.0
C22 C27 C26 H27A 240.0 120.0
H27 C27 C26 H27A 120.0 240.0
C24 C25 C26 C27 300.3 300.1
C25 C26 C27 H26 240.0 239.9
C25 C26 C27 H26A 120.0 119.9
H26 C26 C27 H26A 240.0 240.0
C22 C27 H27 H27A 119.6 240.0
C26 C27 H27 H27A 240.4 120.0
H27 C27 C26 H26 56.8 300.1
H27 C27 C26 H26A 176.8 60.0
C22 C27 H27A H27 240.4 120.0
C26 C27 H27A H27 119.6 240.0
H27A C27 C26 H26 296.8 60.0
H27A C27 C26 H26A 56.8 180.0
C25 C24 C23 C22 304.8 300.0
C25 C24 C23 H23 184.8 60.0
C25 C24 C23 H23A 64.8 180.0
C23 C24 C25 H24 120.0 120.0
C23 C24 C25 H24A 240.0 240.0
H24 C24 C25 H24A 120.0 120.0
C24 C25 C26 H26 180.3 180.0
C24 C25 C26 H26A 60.3 60.0
O28 C25 C24 H25 240.0 240.1
C24 C25 O28 C29 110.0 150.0
H24 C24 C23 C22 64.8 60.0
H24 C24 C23 H23 304.8 180.0
H24 C24 C23 H23A 184.8 300.0
C23 C24 H24 C25 239.1 240.0
C23 C24 H24 H24A 119.5 120.0
C25 C24 H24 H24A 240.5 240.0
H24 C24 C25 C26 298.8 300.0
H24 C24 C25 O28 60.6 60.0
H24 C24 C25 H25 180.6 180.0
H24A C24 C23 C22 184.8 180.0
H24A C24 C23 H23 64.8 300.0
H24A C24 C23 H23A 304.9 60.0
C23 C24 H24A C25 120.9 120.0
C23 C24 H24A H24 240.5 240.0
C25 C24 H24A H24 119.6 120.0
H24A C24 C25 C26 178.8 179.9
H24A C24 C25 O28 300.6 300.0
H24A C24 C25 H25 60.6 59.9
C25 C26 C27 H27 296.8 180.0
C25 C26 C27 H27A 176.8 299.9
C27 C26 C25 H26 120.0 120.1
C27 C26 C25 H26A 240.0 240.0
C26 C25 C24 H24 298.8 300.0
C26 C25 C24 H24A 178.8 179.9
C24 C25 C26 O28 119.6 120.1
C24 C25 C26 H25 239.5 240.0
H26 C26 C25 H26A 120.0 120.0
H26 C26 C27 H27 56.8 300.1
H26 C26 C27 H27A 296.8 60.0
C27 C26 H26 H26A 119.6 120.0
C25 C26 H26 H26A 240.4 240.0
H26A C26 C27 H27 176.8 60.0
H26A C26 C27 H27A 56.8 180.0
C27 C26 H26A H26 240.4 240.0
C25 C26 H26A H26 119.6 120.0
C4 N7 C22 C8 180.0 180.0
C22 N7 C8 O11 360.0 360.0
N7 C22 C23 H23 298.6 60.0
N7 C22 C23 H23A 58.5 300.0
C23 C22 N7 H22 116.9 120.0
N7 C22 C27 H27 300.7 60.0
N7 C22 C27 H27A 60.7 300.0
H22 C22 C23 H23 55.9 180.0
H22 C22 C23 H23A 175.9 60.0
C23 C22 H22 C27 120.2 120.0
H22 C22 C27 H27 183.3 300.0
H22 C22 C27 H27A 303.3 180.0
O28 C25 C24 H24 60.6 60.0
O28 C25 C24 H24A 300.6 300.0
C24 C25 O28 C26 238.7 239.9
C24 C25 O28 H25 120.5 119.9
O28 C25 C26 H26 60.6 59.9
O28 C25 C26 H26A 300.7 300.0
C25 O28 C29 H29 60.5 60.0
C25 O28 C29 H29A 300.5 300.0
H25 C25 C24 H24 180.6 180.0
H25 C25 C24 H24A 60.6 59.9
C24 C25 H25 C26 120.4 120.0
C24 C25 H25 O28 241.3 240.0
H25 C25 C26 H26 300.7 299.9
H25 C25 C26 H26A 180.7 180.0
H25 C25 O28 C29 349.5 30.0
H21A C21 H21 H21B 120.0 119.9
H21 C21 H21A H21B 240.0 240.0
H21 C21 H21B H21A 120.0 120.0
H20 C20 O19 H20A 240.0 240.0
H20 C20 O19 H20B 120.0 120.0
H20A C20 O19 H20B 240.0 240.0
O19 C20 H20 H20A 120.0 120.0
O19 C20 H20 H20B 240.0 240.0
H20A C20 H20 H20B 120.0 120.1
O19 C20 H20A H20 240.0 240.1
O19 C20 H20A H20B 120.0 120.0
H20 C20 H20A H20B 240.0 239.9
O19 C20 H20B H20 120.0 119.9
O19 C20 H20B H20A 240.0 240.0
H20 C20 H20B H20A 120.0 120.1
C29 C30 O31 H30 240.0 119.9
C29 C30 O31 H30A 120.0 240.0
H30 C30 O31 H30A 240.0 120.0
C25 O28 C29 C30 180.5 180.0
O31 C30 C29 H30 120.0 240.1
O31 C30 C29 H30A 240.0 120.0
H30 C30 C29 H30A 120.0 239.9
O31 C30 H30 H30A 120.3 240.0
C29 C30 H30 H30A 239.7 120.1
O31 C30 H30A H30 239.7 119.9
C29 C30 H30A H30 120.3 239.9
C29 O28 C25 H25 349.5 30.0
O28 C29 C30 H30 309.5 185.0
O28 C29 C30 H30A 189.5 305.1
H29 C29 O28 H29A 120.0 120.0
H29 C29 C30 H30 69.5 304.9
H29 C29 C30 H30A 309.5 65.0
O28 C29 H29 H29A 239.4 240.0
H29A C29 C30 H30 189.5 64.9
H29A C29 C30 H30A 69.5 185.0
O28 C29 H29A H29 120.7 120.0
HO31 O31 C30 H30 300.0 60.0
HO31 O31 C30 H30A 60.0 300.0